mRNA_P-wetherbeei_contig14504.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14504.1.1
Unique NamemRNA_P-wetherbeei_contig14504.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14504.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14504contigP-wetherbeei_contig14504:3..1709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1521
Hectar predicted targeting categoryother localisation
Exons2
Cds size918
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186024.1137953-UTR-P-wetherbeei_contig14504:2..5471683186024.1137953-UTR-P-wetherbeei_contig14504:2..547Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14504 3..547 -
1683186024.1535838-UTR-P-wetherbeei_contig14504:1651..17091683186024.1535838-UTR-P-wetherbeei_contig14504:1651..1709Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14504 1652..1709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186024.1245244-CDS-P-wetherbeei_contig14504:547..8591683186024.1245244-CDS-P-wetherbeei_contig14504:547..859Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14504 548..859 -
1683186024.1415896-CDS-P-wetherbeei_contig14504:1045..16511683186024.1415896-CDS-P-wetherbeei_contig14504:1045..1651Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14504 1046..1651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14504.1.1prot_P-wetherbeei_contig14504.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14504 548..1651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14504.1.1

>prot_P-wetherbeei_contig14504.1.1 ID=prot_P-wetherbeei_contig14504.1.1|Name=mRNA_P-wetherbeei_contig14504.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=306bp
MDSDDSEISSSTPSAFKMDPAAYDDDTDTIHDEVPSGKLIRRALIIDQEE
SAKAAPETHSREAANRALRTEAPWREKRLLEESKHRLESRNLTLQSELLL
ARKKIDDLECLNRRLLASGIGAEEDAATAIAGKAGPQRAVGAEPDASRRS
GCQDTGSGSPREDVRASLADARRTIANLEAEMERMAWEEVRKKADIAVLH
ERVVEAERQLNESLATRAAARFSQDMRNGRRQSLCSTLCSCLWPRSRYHV
VHVPSSTHGRGGADIAAASGGSGRSSMGGIGRNSMGGIGDIGGGFGSFRV
GADPA*
back to top

mRNA from alignment at P-wetherbeei_contig14504:3..1709-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14504.1.1 ID=mRNA_P-wetherbeei_contig14504.1.1|Name=mRNA_P-wetherbeei_contig14504.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1707bp|location=Sequence derived from alignment at P-wetherbeei_contig14504:3..1709- (Phaeothamnion wetherbeei SAG_119_79)
CTGATACAGCTCAGGAGCACCTCCACAAACCTTCATTTTCTCTACTTCGC
CCTGAGGCATGGACTCCGACGACTCCGAAATTTCCTCCTCTACCCCGTCG
GCATTCAAGATGGATCCGGCGGCCTACGACGACGACACCGATACTATTCA
CGATGAGGTCCCTTCCGGAAAGCTCATTCGTCGGGCACTGATCATTGATC
AAGAAGAGAGTGCGAAAGCGGCCCCTGAGACGCACAGCCGAGAAGCGGCA
AACCGAGCGTTGCGGACAGAAGCGCCGTGGCGAGAAAAGCGGCTGCTGGA
GGAAAGCAAGCACAGGCTTGAGAGCCGAAATCTCACTCTGCAATCTGAGC
TGCTGCTGGCCAGGAAGAAGATTGACGACCTCGAATGTCTCAACAGACGC
CTGCTTGCGAGCGGCATCGGCGCGGAGGAGGACGCGGCGACCGCTATCGC
TGGCAAGGCCGGGCCACAACGCGCCGTCGGCGCGGAGCCAGATGCATCGC
GAAGAAGTGGTTGCCAGGACACCGGAAGCGGCTCCCCACGTGAAGACGTG
AGGGCGTCGCTCGCCGATGCGCGCCGAACCATCGCAAACCTGGAGGCAGA
AATGGAGCGGATGGCATGGGAAGAAGTCCGGAAAAAGGCCGATATAGCCG
TTCTTCACGAGCGGGTAAGCTGCCTTTTCTTCGGATTTCCAGCGCAGGCG
CTTTTCCCTTTGTCTCTCTTTTGCCTCTTCTTTCCTTTTCACTTTTCGCG
TTTCATAGACGACTCTCCGTTTATTTGCGATGTCCGTCATAGATATAACT
CAATTTTTCTAATAGTTCTTGAAACTATTTCTTGGCGGTCTCTTTCGCAG
GTGGTGGAGGCGGAGCGACAGCTGAACGAGTCGCTCGCGACTCGCGCGGC
GGCGAGGTTCTCCCAGGACATGCGGAACGGCCGCCGCCAGAGCCTGTGCT
CGACGCTGTGCAGCTGCCTCTGGCCGCGCTCCCGTTACCACGTCGTGCAC
GTGCCATCCAGCACGCACGGCCGCGGCGGCGCCGACATCGCCGCCGCCAG
CGGCGGCAGCGGTCGCAGTAGCATGGGTGGCATCGGCCGCAATAGCATGG
GTGGCATCGGCGACATCGGCGGCGGCTTCGGCAGTTTCAGGGTCGGAGCG
GATCCCGCATAGCCCTTACTTTGCCTTGGCGCTTCATATTTTGCGAGAAC
GTTTGAGCTGCCGAAGCAAGGCCGGCGCGGCAAGTTCTTCGGATAAGAAC
GAAAGACAGCGCGTTACGGCGCACAGGAGGTTTCGACCAATTTTTGCTGA
TATGGGGCCGATGATAAAAAACTAGCCGATGGAGGAATTTACCGGCGGTA
TGGGGATCGGCAGGCAGGGAGACCGGCCAGGCCGCGGCGCCGCAAGGACC
GTGCGGCGCGGCGACGGAAGGGTGGTGCCGCAAGGAACGTGTGGCGCCGC
CGTGAAGGCTTTTGGGGAAGCGCGCAAGCGCGCCGGACAACCCTCAAAAG
CTTCTGCCATGGAAATGGAAATAGTGCAGGGGAAGAGGAGGTATAGGTAT
GAAGATTACGATACGCTACCACTTAAGCTCAAAAAACGTTAGGACAACTT
CCATTTTGGGACAAGGGCCCGCGGCAGGCACTAGTTGTTCACGTTGGGCT
TTCATACCTGCTTCTTTTTCTCCCCGCGCAAATGAATGCAACAACAATAT
ATTATGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14504:3..1709-

>mRNA_P-wetherbeei_contig14504.1.1 ID=mRNA_P-wetherbeei_contig14504.1.1|Name=mRNA_P-wetherbeei_contig14504.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=918bp|location=Sequence derived from alignment at P-wetherbeei_contig14504:3..1709- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTCCGACGACTCCGAAATTTCCTCCTCTACCCCGTCGGCATTCAA
GATGGATCCGGCGGCCTACGACGACGACACCGATACTATTCACGATGAGG
TCCCTTCCGGAAAGCTCATTCGTCGGGCACTGATCATTGATCAAGAAGAG
AGTGCGAAAGCGGCCCCTGAGACGCACAGCCGAGAAGCGGCAAACCGAGC
GTTGCGGACAGAAGCGCCGTGGCGAGAAAAGCGGCTGCTGGAGGAAAGCA
AGCACAGGCTTGAGAGCCGAAATCTCACTCTGCAATCTGAGCTGCTGCTG
GCCAGGAAGAAGATTGACGACCTCGAATGTCTCAACAGACGCCTGCTTGC
GAGCGGCATCGGCGCGGAGGAGGACGCGGCGACCGCTATCGCTGGCAAGG
CCGGGCCACAACGCGCCGTCGGCGCGGAGCCAGATGCATCGCGAAGAAGT
GGTTGCCAGGACACCGGAAGCGGCTCCCCACGTGAAGACGTGAGGGCGTC
GCTCGCCGATGCGCGCCGAACCATCGCAAACCTGGAGGCAGAAATGGAGC
GGATGGCATGGGAAGAAGTCCGGAAAAAGGCCGATATAGCCGTTCTTCAC
GAGCGGGTGGTGGAGGCGGAGCGACAGCTGAACGAGTCGCTCGCGACTCG
CGCGGCGGCGAGGTTCTCCCAGGACATGCGGAACGGCCGCCGCCAGAGCC
TGTGCTCGACGCTGTGCAGCTGCCTCTGGCCGCGCTCCCGTTACCACGTC
GTGCACGTGCCATCCAGCACGCACGGCCGCGGCGGCGCCGACATCGCCGC
CGCCAGCGGCGGCAGCGGTCGCAGTAGCATGGGTGGCATCGGCCGCAATA
GCATGGGTGGCATCGGCGACATCGGCGGCGGCTTCGGCAGTTTCAGGGTC
GGAGCGGATCCCGCATAG
back to top