mRNA_P-wetherbeei_contig14488.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14488.1.1
Unique NamemRNA_P-wetherbeei_contig14488.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14488.1.1 vs. uniprot
Match: A0A6A7M659_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6A7M659_9PROT)

HSP 1 Score: 109 bits (273), Expect = 8.020e-27
Identity = 53/79 (67.09%), Postives = 70/79 (88.61%), Query Frame = 1
Query:    7 ILVFVSDPGEKIVSDLAVLSELFGFPPAEGRLVLALLSGATAPEFAQMVGVTYNTVRTLLSRAMARTGSRSQVELVLLV 243
            +L+F+SDP +++VSDLA+L ELFGFPP+E RLVLALL+G   P+FA+ VG++YNT+RTLL RAM RTG+RSQVELVL++
Sbjct:  292 VLLFISDPTQQLVSDLAILKELFGFPPSEARLVLALLNGIAPPDFAREVGLSYNTIRTLLVRAMDRTGTRSQVELVLVM 370          
BLAST of mRNA_P-wetherbeei_contig14488.1.1 vs. uniprot
Match: A0A512NS25_9HYPH (Helix-turn-helix transcriptional regulator n=1 Tax=Reyranella soli TaxID=1230389 RepID=A0A512NS25_9HYPH)

HSP 1 Score: 103 bits (257), Expect = 1.540e-24
Identity = 54/79 (68.35%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    7 ILVFVSDPGEKIVSDLAVLSELFGFPPAEGRLVLALLSGATAPEFAQMVGVTYNTVRTLLSRAMARTGSRSQVELVLLV 243
            +LVFVSDP  K+ +DL+VL+ LFGFPPAE RLVLAL++G   PE A   GVTYNT+RT L+RAMART +RSQ+ELVLLV
Sbjct:  288 VLVFVSDPAAKMAADLSVLAGLFGFPPAEARLVLALMAGKQLPEIAIDTGVTYNTIRTQLARAMARTETRSQLELVLLV 366          
BLAST of mRNA_P-wetherbeei_contig14488.1.1 vs. uniprot
Match: A0A5C5TDN7_9HYPH (HTH luxR-type domain-containing protein n=1 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5TDN7_9HYPH)

HSP 1 Score: 82.8 bits (203), Expect = 7.690e-17
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    7 ILVFVSDPGEKIVSDLAVLSELFGFPPAEGRLVLALLSGATAPEFAQMVGVTYNTVRTLLSRAMARTGSRSQVELVLLV 243
            +LVF++DP      D   L +LF F PAE RLVLAL+SG   P F+   G++YNTVRTLL+RAM RT + SQ++LV LV
Sbjct:  292 VLVFIADPDATPAIDPVALEQLFDFTPAEARLVLALVSGVPLPAFSHQTGLSYNTVRTLLARAMTRTETNSQLQLVRLV 370          
BLAST of mRNA_P-wetherbeei_contig14488.1.1 vs. uniprot
Match: A0A259MD66_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium 39-66-50 TaxID=1970570 RepID=A0A259MD66_9PROT)

HSP 1 Score: 82.0 bits (201), Expect = 1.390e-16
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   10 LVFVSDPGEKIVSDLAVLSELFGFPPAEGRLVLALLSGATAPEFAQMVGVTYNTVRTLLSRAMARTGSRSQVELVLLV 243
            LVFV+DP E     +  L +LFGFP AE  L   LL+G + P++A+   ++YNT RTLL+RAMART +RSQ+ELVLL+
Sbjct:  293 LVFVADPAEGNAVGIGALRDLFGFPRAEAELAAGLLNGISLPDYARRSRISYNTARTLLARAMARTSTRSQLELVLLL 370          
BLAST of mRNA_P-wetherbeei_contig14488.1.1 vs. uniprot
Match: A0A5C8PSZ2_9HYPH (Helix-turn-helix transcriptional regulator n=1 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PSZ2_9HYPH)

HSP 1 Score: 82.0 bits (201), Expect = 1.460e-16
Identity = 43/75 (57.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    7 ILVFVSDPGEKIVSDLAVLSELFGFPPAEGRLVLALLSGATAPEFAQMVGVTYNTVRTLLSRAMARTGSRSQVEL 231
            +LVF++DP  +  +D A L  LF   PAE RLVLAL +G T P FA   G++YNTVRTLL+RAMART + SQ+EL
Sbjct:  292 VLVFIADPQARPDTDPAALMALFDLTPAEARLVLALANGVTLPAFASQAGLSYNTVRTLLARAMARTQTSSQLEL 366          
BLAST of mRNA_P-wetherbeei_contig14488.1.1 vs. uniprot
Match: A0A512NS06_9HYPH (Transcriptional regulator n=2 Tax=Reyranella soli TaxID=1230389 RepID=A0A512NS06_9HYPH)

HSP 1 Score: 64.7 bits (156), Expect = 2.330e-10
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   10 LVFVSDPGEKIVSDLAVLSELFGFPPAEGRLVLALLSGATAPEFAQMVGVTYNTVRTLLSRAMARTGSRSQVELV 234
            ++ V+DP      DL  L  LFGF PAE RLV  L+SG + P+ A+ +G+ + T RT L+RA A+T + SQ++LV
Sbjct:  285 MLIVTDPDADPQLDLQALKALFGFTPAEARLVNLLVSGRSLPDVAKELGIGFETARTHLARARAKTETTSQIDLV 359          
BLAST of mRNA_P-wetherbeei_contig14488.1.1 vs. uniprot
Match: A0A521QPL5_9HYPH (HTH luxR-type domain-containing protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521QPL5_9HYPH)

HSP 1 Score: 62.4 bits (150), Expect = 1.560e-9
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    7 ILVFVSDPGEKIVSDLAVLSELFGFPPAEGRLVLALLSGATAPEFAQMVGVTYNTVRTLLSRAMARTGSRSQVELVLLV 243
            +++ ++DP      +   LS LFGF PAE RLV  L +G + P  A+ +GV++ T RT L+ A A+T + SQV+LV LV
Sbjct:  296 VMLIITDPETARTVEPRTLSALFGFTPAEARLVGLLTTGLSLPAIAKRLGVSFETARTQLASARAKTDTASQVDLVRLV 374          
BLAST of mRNA_P-wetherbeei_contig14488.1.1 vs. uniprot
Match: UPI0005C284A4 (helix-turn-helix transcriptional regulator n=1 Tax=Reyranella massiliensis TaxID=445220 RepID=UPI0005C284A4)

HSP 1 Score: 62.4 bits (150), Expect = 1.560e-9
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    7 ILVFVSDPGEKIVSDLAVLSELFGFPPAEGRLVLALLSGATAPEFAQMVGVTYNTVRTLLSRAMARTGSRSQVELVLLV 243
            +++ V+DP      +  VLS LFG  PAE RLV  L +G   P  A+ +GV++ TVRT L+ A A+T + SQV+LV LV
Sbjct:  296 VMLIVTDPEAAPRIEPRVLSTLFGLTPAEARLVSLLAAGLPLPAIAKRLGVSFETVRTQLATARAKTDTASQVDLVRLV 374          
BLAST of mRNA_P-wetherbeei_contig14488.1.1 vs. uniprot
Match: A0A5C8PSR5_9HYPH (HTH luxR-type domain-containing protein n=1 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PSR5_9HYPH)

HSP 1 Score: 61.2 bits (147), Expect = 4.040e-9
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   10 LVFVSDPGEKIVSDLAVLSELFGFPPAEGRLVLALLSGATAPEFAQMVGVTYNTVRTLLSRAMARTGSRSQVELV 234
            +VF++DP      +  ++  L    PAE R+V  L SG   P+     G +YNTVRTLL+RAM +T + SQV+LV
Sbjct:  293 VVFINDPDGVPGPEAGLVQALLDLTPAEARVVAMLASGVPLPQIGAATGTSYNTVRTLLARAMTKTQTTSQVDLV 367          
BLAST of mRNA_P-wetherbeei_contig14488.1.1 vs. uniprot
Match: A0A2D6BN28_9DELT (HTH luxR-type domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D6BN28_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 4.110e-8
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   13 VFVSDPGEKIVSDLAVLSELFGFPPAEGRLVLALLSGATAPEFAQMVGVTYNTVRTLLSRAMARTGSRSQVELVLLV 243
            +F++DP          L  L+G  PAE R V  +  GA+    A+++GVT++TVR  L RA A+TG+RSQ +LV LV
Sbjct:  191 LFLADPERSGQCAPGELEALYGLTPAEARTVRCVARGASVARSAEILGVTHHTVRFNLKRAFAKTGARSQAQLVRLV 267          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14488.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6A7M659_9PROT8.020e-2767.09Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]
A0A512NS25_9HYPH1.540e-2468.35Helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A5C5TDN7_9HYPH7.690e-1754.43HTH luxR-type domain-containing protein n=1 Tax=Re... [more]
A0A259MD66_9PROT1.390e-1653.85Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]
A0A5C8PSZ2_9HYPH1.460e-1657.33Helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A512NS06_9HYPH2.330e-1045.33Transcriptional regulator n=2 Tax=Reyranella soli ... [more]
A0A521QPL5_9HYPH1.560e-943.04HTH luxR-type domain-containing protein n=1 Tax=Re... [more]
UPI0005C284A41.560e-945.57helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A5C8PSR5_9HYPH4.040e-942.67HTH luxR-type domain-containing protein n=1 Tax=Vi... [more]
A0A2D6BN28_9DELT4.110e-842.86HTH luxR-type domain-containing protein n=1 Tax=De... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14488contigP-wetherbeei_contig14488:212..454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1205680.CAKO01000026_gene4600
PFAMsGerE
Model size243
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.56e-10
EggNOG OGsCOG2771@1|root,COG2771@2|Bacteria,1MWC0@1224|Proteobacteria,2UG16@28211|Alphaproteobacteria,2JTVH@204441|Rhodospirillales
Descriptionhelix_turn_helix, Lux Regulon
Cds size243
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186023.3718684-CDS-P-wetherbeei_contig14488:211..4541683186023.3718684-CDS-P-wetherbeei_contig14488:211..454Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14488 212..454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14488.1.1prot_P-wetherbeei_contig14488.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14488 212..454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14488.1.1

>prot_P-wetherbeei_contig14488.1.1 ID=prot_P-wetherbeei_contig14488.1.1|Name=mRNA_P-wetherbeei_contig14488.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
SEILVFVSDPGEKIVSDLAVLSELFGFPPAEGRLVLALLSGATAPEFAQM
VGVTYNTVRTLLSRAMARTGSRSQVELVLLV
back to top

mRNA from alignment at P-wetherbeei_contig14488:212..454+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14488.1.1 ID=mRNA_P-wetherbeei_contig14488.1.1|Name=mRNA_P-wetherbeei_contig14488.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig14488:212..454+ (Phaeothamnion wetherbeei SAG_119_79)
TCCGAGATCTTGGTGTTTGTGTCGGATCCCGGCGAGAAAATAGTCTCCGA CCTCGCTGTCCTGTCGGAGCTGTTCGGCTTTCCACCTGCCGAGGGCCGGC TTGTCCTGGCGTTGCTGTCCGGCGCGACGGCGCCCGAGTTCGCCCAGATG GTTGGCGTGACCTACAACACGGTACGAACGCTGCTGTCTCGCGCCATGGC GCGCACCGGCTCGCGCTCGCAGGTGGAACTGGTGCTGCTGGTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14488:212..454+

>mRNA_P-wetherbeei_contig14488.1.1 ID=mRNA_P-wetherbeei_contig14488.1.1|Name=mRNA_P-wetherbeei_contig14488.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig14488:212..454+ (Phaeothamnion wetherbeei SAG_119_79)
TCCGAGATCTTGGTGTTTGTGTCGGATCCCGGCGAGAAAATAGTCTCCGA
CCTCGCTGTCCTGTCGGAGCTGTTCGGCTTTCCACCTGCCGAGGGCCGGC
TTGTCCTGGCGTTGCTGTCCGGCGCGACGGCGCCCGAGTTCGCCCAGATG
GTTGGCGTGACCTACAACACGGTACGAACGCTGCTGTCTCGCGCCATGGC
GCGCACCGGCTCGCGCTCGCAGGTGGAACTGGTGCTGCTGGTG
back to top