mRNA_P-wetherbeei_contig14447.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14447.1.1
Unique NamemRNA_P-wetherbeei_contig14447.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14447.1.1 vs. uniprot
Match: A0A446KP25_TRITD (Uncharacterized protein n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446KP25_TRITD)

HSP 1 Score: 71.6 bits (174), Expect = 2.190e-14
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 DSKMAAPAATAEDATEMLACCRYGELEDAMALLDAGVLVDSVDSAGNTALHLSCANGHEAVVAMLLTRGA 210
            +S    PAATAE A +++   RY ELED +AL  AGV +DS DS G TALH++ ANGH AVV  L+  GA
Sbjct:    4 ESAQPTPAATAEQAQDLIDAARYDELEDVVALFSAGVPLDSADSQGRTALHMASANGHLAVVEYLIQNGA 73
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BLAST of mRNA_P-wetherbeei_contig14447.1.1 vs. uniprot
Match: A0A453ATZ9_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453ATZ9_AEGTS)

HSP 1 Score: 68.2 bits (165), Expect = 9.700e-13
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 DSKMAAPAATAEDATEMLACCRYGELEDAMALLDAGVLVDSVDSAGNTALHLSCANGHEAVVAMLL 198
            +S    PAATAE A +++   RY ELED +AL  AGV +DS DS G TALH++ ANGH AVV  L+
Sbjct:    4 ESAQPTPAATAEQAQDLIDAARYDELEDVVALFSAGVPLDSADSQGRTALHMASANGHLAVVEYLI 69
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BLAST of mRNA_P-wetherbeei_contig14447.1.1 vs. uniprot
Match: A0A453AU56_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453AU56_AEGTS)

HSP 1 Score: 68.2 bits (165), Expect = 1.100e-12
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 DSKMAAPAATAEDATEMLACCRYGELEDAMALLDAGVLVDSVDSAGNTALHLSCANGHEAVVAMLL 198
            +S    PAATAE A +++   RY ELED +AL  AGV +DS DS G TALH++ ANGH AVV  L+
Sbjct:    4 ESAQPTPAATAEQAQDLIDAARYDELEDVVALFSAGVPLDSADSQGRTALHMASANGHLAVVEYLI 69
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BLAST of mRNA_P-wetherbeei_contig14447.1.1 vs. uniprot
Match: M7ZL47_TRIUA (Protein TANC2 n=13 Tax=Triticinae TaxID=1648030 RepID=M7ZL47_TRIUA)

HSP 1 Score: 68.2 bits (165), Expect = 2.270e-12
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 DSKMAAPAATAEDATEMLACCRYGELEDAMALLDAGVLVDSVDSAGNTALHLSCANGHEAVVAMLL 198
            +S    PAATAE A +++   RY ELED +AL  AGV +DS DS G TALH++ ANGH AVV  L+
Sbjct:    4 ESAQPTPAATAEQAQDLIDAARYDELEDVVALFSAGVPLDSADSQGRTALHMASANGHLAVVEYLI 69
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BLAST of mRNA_P-wetherbeei_contig14447.1.1 vs. uniprot
Match: I1GRK3_BRADI (Uncharacterized protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1GRK3_BRADI)

HSP 1 Score: 66.2 bits (160), Expect = 1.300e-11
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   22 AATAEDATEMLACCRYGELEDAMALLDAGVLVDSVDSAGNTALHLSCANGHEAVVAMLLTRGA 210
            AA AE A +++   RY ELED + L  AGV +DS DS G TALH+S ANGH AVV  L+  GA
Sbjct:   12 AAAAEQAQDLIDAARYDELEDVVTLFSAGVPLDSADSQGRTALHMSAANGHLAVVEYLIQNGA 74
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BLAST of mRNA_P-wetherbeei_contig14447.1.1 vs. uniprot
Match: D7G640_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G640_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.850e-11
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   64 RYGELEDAMALLDAGVLVDSVDSAGNTALHLSCANGHEAVVAMLLTRGARHLPN 225
            RYGELED  A+L +GV  +  D+ GNTALHLSCANGH  V+  L+  GA HLPN
Sbjct:   14 RYGELEDVEAILSSGVDANHQDAHGNTALHLSCANGHADVIRALIKAGASHLPN 67
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BLAST of mRNA_P-wetherbeei_contig14447.1.1 vs. uniprot
Match: F0Y0M5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0M5_AURAN)

HSP 1 Score: 59.7 bits (143), Expect = 2.380e-8
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   46 EMLACCRYGELEDAMALLDAGVLVDSVDSAGNTALHLSCANGHEAVVAMLLTR 204
            E L C RYGELE+ +  L  G  V +    GNTALH++CANGHEA+VA LL R
Sbjct:   11 EFLLCARYGELEEMLEELAKGADVMARGDGGNTALHMACANGHEAIVAALLDR 63
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BLAST of mRNA_P-wetherbeei_contig14447.1.1 vs. uniprot
Match: A0A8K1CBX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBX8_PYTOL)

HSP 1 Score: 56.6 bits (135), Expect = 3.310e-7
Identity = 34/71 (47.89%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:   40 ATEMLACCRYGELEDAMALLDAGVLVDSVDS--------AGNTALHLSCANGHEAVVAMLLTRGARHLPNS 228
            A E+LAC RYGELE+   LL A V VD  DS          NT LH++CANGH      L+  GARH+ N+
Sbjct:    2 AEEVLACARYGELEELQELLKA-VSVDEKDSYVNYVQPDTLNTPLHMACANGHADCAKELIAHGARHIANA 71
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BLAST of mRNA_P-wetherbeei_contig14447.1.1 vs. uniprot
Match: A0A7J7Q2U7_9CHLO (Ankyrin repeat-containing domain protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q2U7_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 1.010e-6
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   25 ATAEDATE-MLACCRYGELEDAMALLDAGVLVDSVDSAGNTALHLSCANGHEAVVAMLLTRG 207
            ATAE+  E ++   RYG+ +D    +   V VD  DSAG TALH++CANGH  +V +LL  G
Sbjct:    3 ATAEELLEFVIDSARYGDTDDVKVAIQEKVAVDGQDSAGRTALHMACANGHVDIVLLLLEAG 64
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BLAST of mRNA_P-wetherbeei_contig14447.1.1 vs. uniprot
Match: A0A2J7ZXV5_9CHLO (Oxysterol-binding protein-related protein 1 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZXV5_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 1.480e-6
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   64 RYGELEDAMALLDAGVLVDSVDSAGNTALHLSCANGHEAVVAMLL 198
            RY ++ED +  L  G  VDS D  G TALH++CANGHEAVV+ LL
Sbjct:   22 RYDDMEDVVMALAQGAPVDSRDDMGRTALHMACANGHEAVVSRLL 66
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14447.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A446KP25_TRITD2.190e-1454.29Uncharacterized protein n=2 Tax=Triticum turgidum ... [more]
A0A453ATZ9_AEGTS9.700e-1354.55Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A453AU56_AEGTS1.100e-1254.55Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
M7ZL47_TRIUA2.270e-1254.55Protein TANC2 n=13 Tax=Triticinae TaxID=1648030 Re... [more]
I1GRK3_BRADI1.300e-1155.56Uncharacterized protein n=1 Tax=Brachypodium dista... [more]
D7G640_ECTSI2.850e-1161.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F0Y0M5_AURAN2.380e-856.60Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8K1CBX8_PYTOL3.310e-747.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7J7Q2U7_9CHLO1.010e-646.77Ankyrin repeat-containing domain protein n=1 Tax=S... [more]
A0A2J7ZXV5_9CHLO1.480e-657.78Oxysterol-binding protein-related protein 1 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14447contigP-wetherbeei_contig14447:1048..1341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4565.Traes_2AS_1723B9EE9.1
PFAMsAnk_2,Ank_4,Ank_5
Model size294
Max annot lvl35493|Streptophyta
KEGG koko:K06867,ko:K21442
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000056,GO:0005575,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0015931,GO:0022613,GO:0030684,GO:0030688,GO:0031503,GO:0032991,GO:0033036,GO:0033750,GO:0034613,GO:0042254,GO:0042274,GO:0042886,GO:0044085,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:1990904
Exons1
Evalue6.47e-15
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota,37UEY@33090|Viridiplantae,3GIJX@35493|Streptophyta,3KZGH@4447|Liliopsida,3IH9Q@38820|Poales
DescriptionAnkyrin repeat
Cds size285
COG categoryS
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186022.1690753-UTR-P-wetherbeei_contig14447:1047..10561683186022.1690753-UTR-P-wetherbeei_contig14447:1047..1056Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14447 1048..1056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186022.1781783-CDS-P-wetherbeei_contig14447:1056..13411683186022.1781783-CDS-P-wetherbeei_contig14447:1056..1341Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14447 1057..1341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14447.1.1prot_P-wetherbeei_contig14447.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14447 1057..1341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14447.1.1

>prot_P-wetherbeei_contig14447.1.1 ID=prot_P-wetherbeei_contig14447.1.1|Name=mRNA_P-wetherbeei_contig14447.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
MAAPAATAEDATEMLACCRYGELEDAMALLDAGVLVDSVDSAGNTALHLS
CANGHEAVVAMLLTRGARHLPNSSGNTPLHWAVSSKHKACVRLLL
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mRNA from alignment at P-wetherbeei_contig14447:1048..1341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14447.1.1 ID=mRNA_P-wetherbeei_contig14447.1.1|Name=mRNA_P-wetherbeei_contig14447.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig14447:1048..1341+ (Phaeothamnion wetherbeei SAG_119_79)
GACAGCAAAATGGCGGCCCCTGCAGCTACAGCGGAAGACGCCACGGAAAT
GTTGGCGTGCTGCCGCTACGGGGAACTCGAAGACGCGATGGCTCTCCTCG
ACGCGGGGGTGCTCGTGGACTCTGTGGACTCGGCTGGAAACACCGCCTTG
CACCTGTCGTGCGCCAACGGCCACGAGGCCGTTGTGGCCATGCTCTTGAC
TCGTGGCGCACGGCATTTGCCGAACTCCAGCGGCAACACCCCGTTGCATT
GGGCCGTGTCGAGCAAGCACAAGGCCTGCGTCCGGCTCCTTTTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14447:1048..1341+

>mRNA_P-wetherbeei_contig14447.1.1 ID=mRNA_P-wetherbeei_contig14447.1.1|Name=mRNA_P-wetherbeei_contig14447.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig14447:1048..1341+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCCCCTGCAGCTACAGCGGAAGACGCCACGGAAATGTTGGCGTG
CTGCCGCTACGGGGAACTCGAAGACGCGATGGCTCTCCTCGACGCGGGGG
TGCTCGTGGACTCTGTGGACTCGGCTGGAAACACCGCCTTGCACCTGTCG
TGCGCCAACGGCCACGAGGCCGTTGTGGCCATGCTCTTGACTCGTGGCGC
ACGGCATTTGCCGAACTCCAGCGGCAACACCCCGTTGCATTGGGCCGTGT
CGAGCAAGCACAAGGCCTGCGTCCGGCTCCTTTTA
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