mRNA_P-wetherbeei_contig1443.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1443.3.2
Unique NamemRNA_P-wetherbeei_contig1443.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1443.3.2 vs. uniprot
Match: A0A7S1D0C9_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0C9_CYCTE)

HSP 1 Score: 96.7 bits (239), Expect = 7.180e-19
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:  784 LSTLDLSRNRLTDFDGLLHLTELEDLWMTSNGIDTFEKVEQLQVLSRLETLYLEHNPIYKDFEYRMRTARILPSLKQLDATEV 1032
            L+TLDLSRNRLT      HLT L+DLW++ N I++FE VE L  L+ L+ LYLE+NP+  DFEYR R   ++PSL Q+DAT +
Sbjct:  178 LTTLDLSRNRLTSTKIFQHLTTLDDLWLSGNKIESFEAVEPLSSLTSLDALYLEYNPVASDFEYRKRLKELVPSLNQIDATMI 260
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BLAST of mRNA_P-wetherbeei_contig1443.3.2 vs. uniprot
Match: K0T6R4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T6R4_THAOC)

HSP 1 Score: 95.1 bits (235), Expect = 1.060e-17
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:  784 LSTLDLSRNRLTDFDGLLHLTELEDLWMTSNGIDTFEKVEQLQVLSRLETLYLEHNPIYKDFEYRMRTARILPSLKQLDATEV 1032
            L+TLDLS NRLTD   L HLT L DLW++SN I TF+ V+       L+ +YLEHNP+  DFEYRM+  +I+PSL Q+DA  +
Sbjct:  314 LNTLDLSSNRLTDASPLSHLTSLTDLWISSNDIKTFDDVQXXXXXXXLDGIYLEHNPVASDFEYRMQLTKIIPSLTQIDANMI 396
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BLAST of mRNA_P-wetherbeei_contig1443.3.2 vs. uniprot
Match: A0A7S4WB46_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WB46_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.250e-16
Identity = 43/85 (50.59%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:  784 LSTLDLSRNRLTDFDGLLHLTELEDLWMTSNGIDTFEKVEQLQVLSR-----LETLYLEHNPIYKDFEYRMRTARILPSLKQLDA 1023
            L+TLDLS+NRLT     +H+  LE+LW++SN I TF+ VE + +L       LE +YLE+NP+ K+F+YR R A +LPSL Q+DA
Sbjct:   90 LNTLDLSKNRLTTTTPFVHIHSLEELWLSSNDIKTFDDVEPIAILGSRDGACLEGIYLEYNPVSKEFDYRKRIAAMLPSLNQIDA 174
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BLAST of mRNA_P-wetherbeei_contig1443.3.2 vs. uniprot
Match: A0A7R9ZPI7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZPI7_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.110e-15
Identity = 51/118 (43.22%), Postives = 71/118 (60.17%), Query Frame = 1 
Query:  784 LSTLDLSRNRLTDFDGLLHLTELEDLWMTSNGIDTFEKVEQLQ--------VLSRLETLYLEHNPIYKDFEYRMRTARILPSLKQLDATEVRR*RREPVSA----G*SGTAGGCIAGS 1101
            LS +DLSRNRLT      HL  LE+LW++ N I TF+ VE L+        +  +LET+YLE+NP+ K+FEYR + A  +PSL Q+DAT +R    + V A    G  G +G  + G+
Sbjct:  334 LSVVDLSRNRLTTCQPFAHLKSLEELWISGNQIKTFDDVEALKQPASGGSSLAVKLETVYLEYNPVAKEFEYRKKLAEWVPSLSQIDATRIRPFGAQVVGAATSVGTPGASGTILMGA 451
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BLAST of mRNA_P-wetherbeei_contig1443.3.2 vs. uniprot
Match: A0A7S2EF28_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EF28_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.570e-15
Identity = 43/85 (50.59%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:  784 LSTLDLSRNRLTDFDGLLHLTELEDLWMTSNGIDTFEKVEQLQVLSR-----LETLYLEHNPIYKDFEYRMRTARILPSLKQLDA 1023
            L+TLDLS+NRLT     +H+  LE+LW++SN I TF+ VE + +L       LE +YLE+NP+ K+F+YR R A +LPSL Q+DA
Sbjct:  282 LNTLDLSKNRLTTTTPFVHIHSLEELWLSSNDIKTFDDVEPIAILGSRDGACLEGIYLEYNPVSKEFDYRKRIAAMLPSLNQIDA 366
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BLAST of mRNA_P-wetherbeei_contig1443.3.2 vs. uniprot
Match: A0A7S3Q0W2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0W2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.580e-14
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:  784 LSTLDLSRNRLTDFDGLLHLTELEDLWMTSNGIDTFEKVEQLQVLSR-----LETLYLEHNPIYKDFEYRMRTARILPSLKQLDATEV 1032
            L+TLDLS+NRLT      HL  L DLW++SN I +F+++E L  L       L  +Y+EHNPIY DFEYR +   ++PSL Q+DA  +
Sbjct:  287 LTTLDLSKNRLTSCRPFAHLKTLNDLWVSSNNISSFDELEPLSSLGTRDGACLTEIYMEHNPIYNDFEYRKKLKEMIPSLVQIDANVI 374
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BLAST of mRNA_P-wetherbeei_contig1443.3.2 vs. uniprot
Match: A0A7S2K0H1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K0H1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.170e-13
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:  784 LSTLDLSRNRLTDFDGLLHLTELEDLWMTSNGIDTFEKVEQLQVLSRLETLYLEHNPIYKDFEYRMRTARILPSLKQLDATEVR 1035
            LSTLD+SRNRLT+   + HLT +EDLW++ N I  FE +           +YLE+N I  DFEYR +  +I+PSL Q+DA  +R
Sbjct:  273 LSTLDISRNRLTNTIPISHLTSIEDLWLSGNEIKDFESIXXXXXXXXXGCVYLEYNSIGDDFEYRKKVKQIMPSLNQIDAVPIR 356
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BLAST of mRNA_P-wetherbeei_contig1443.3.2 vs. uniprot
Match: A0A1E7F6B6_9STRA (L domain-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F6B6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.700e-13
Identity = 50/123 (40.65%), Postives = 68/123 (55.28%), Query Frame = 1 
Query:  784 LSTLDLSRNRLTDFDGL--------------LHLTELEDLWMTSNGIDTFEKVEQLQVLS------RLETLYLEHNPIYKDFEYRMRTARILPSLKQLDATEVRR*RREPVSAG*SGTAGGCI 1092
            L+TLDLS NRLT                   LH   LE+LW+++N I  FE +  L+V S      +LET+YLE+NP+ KDFEYR + A  +P+L+Q+DAT +R     P  +G  G  GG  
Sbjct:  259 LTTLDLSNNRLTXXXXXXXXXXXXXXXTVVGLHWPMLEELWLSANLITDFEAIHSLKVASENKQLPKLETVYLEYNPVSKDFEYRKKLAEYIPTLQQIDATMIRGYGSVPKPSG-DGAGGGTT 380
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BLAST of mRNA_P-wetherbeei_contig1443.3.2 vs. uniprot
Match: A0A482RXF1_9ARCH (Leucine-rich repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXF1_9ARCH)

HSP 1 Score: 79.7 bits (195), Expect = 3.210e-13
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:  808 NRLTDFDGLLHLTELEDLWMTSNGIDTFEKVEQLQVLSRLETLYLEHNPIYKDFEYRMRTARILPSLKQLDATEVRR 1038
            N +    G+  L  L+++WM+S+ + +F+ +     L RL  LYLEH+PI KDFEYRM+ A+++PSL+QLDAT V R
Sbjct:  187 NNVQSVQGIEQLPSLQEVWMSSSALSSFDALTPFTKLPRLTCLYLEHSPIAKDFEYRMQLAKMIPSLEQLDATNVHR 263
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BLAST of mRNA_P-wetherbeei_contig1443.3.2 vs. uniprot
Match: A0A7S1ZMG4_TRICV (Hypothetical protein (Fragment) n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZMG4_TRICV)

HSP 1 Score: 80.5 bits (197), Expect = 3.570e-13
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:  778 AALSTLDLSRNRLTDFDGLLHLTELEDLWMTSNGIDTFEKVEQLQVL-----SRLETLYLEHNPIYKDFEYRMRTARILPSLKQLDATEV 1032
            A L+T+DLSRNRLT  +   HL  LE+LW++ N I+TF+ V  +  L     + L  +YLE NP+ KD+EYR +   +LPSL+Q+DA  +
Sbjct:  218 AKLNTVDLSRNRLTTTEPFSHLLALEELWLSGNEIETFDSVLPIANLGSREGAALRGIYLEMNPVAKDYEYRKKVKEMLPSLEQIDADMI 307
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1443.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1D0C9_CYCTE7.180e-1955.42Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
K0T6R4_THAOC1.060e-1754.22Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4WB46_9STRA3.250e-1650.59Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7R9ZPI7_9STRA1.110e-1543.22Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2EF28_9STRA3.570e-1550.59Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S3Q0W2_9STRA1.580e-1447.73Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2K0H1_9STRA1.170e-1347.62Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1E7F6B6_9STRA2.700e-1340.65L domain-like protein n=1 Tax=Fragilariopsis cylin... [more]
A0A482RXF1_9ARCH3.210e-1346.75Leucine-rich repeat domain-containing protein n=1 ... [more]
A0A7S1ZMG4_TRICV3.570e-1345.56Hypothetical protein (Fragment) n=2 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1443contigP-wetherbeei_contig1443:5342..7178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0T6R4
PFAMsLRR_4,LRR_6
Model size1211
Max annot lvl2836|Bacillariophyta
KEGG koko:K17550
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.24e-22
EggNOG OGsCOG4886@1|root,KOG0531@2759|Eukaryota,2XC74@2836|Bacillariophyta
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-21_002350.1
DescriptionLeucine Rich repeats (2 copies)
Cds size816
COG categoryT
BRITEko00000,ko01009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186021.4257329-UTR-P-wetherbeei_contig1443:5341..55661683186021.4257329-UTR-P-wetherbeei_contig1443:5341..5566Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1443 5342..5566 +
1683186021.467208-UTR-P-wetherbeei_contig1443:7008..71781683186021.467208-UTR-P-wetherbeei_contig1443:7008..7178Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1443 7009..7178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186021.438012-CDS-P-wetherbeei_contig1443:5566..59581683186021.438012-CDS-P-wetherbeei_contig1443:5566..5958Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1443 5567..5958 +
1683186021.4477134-CDS-P-wetherbeei_contig1443:6228..65731683186021.4477134-CDS-P-wetherbeei_contig1443:6228..6573Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1443 6229..6573 +
1683186021.4575217-CDS-P-wetherbeei_contig1443:6929..70081683186021.4575217-CDS-P-wetherbeei_contig1443:6929..7008Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1443 6930..7008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1443.3.2prot_P-wetherbeei_contig1443.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1443 5567..7008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1443.3.2

>prot_P-wetherbeei_contig1443.3.2 ID=prot_P-wetherbeei_contig1443.3.2|Name=mRNA_P-wetherbeei_contig1443.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=272bp
MEGLEALTSLTKLELYDNQILSMACMESLGRLVVLDLSYNLIKSLAPLRH
CPLLEEVYVAQNRIRVIEGLDGATRLRKLDLGANRIRRIEGLANCMVLEE
LWLGKNKIDVIANLDTLGQLRRLDVQASCLLNRLTRISGLERLSALEELY
LAGNAILTAAADCGSGGAACAAAAAAGSAPLAAQAALSTLDLSRNRLTDF
DGLLHLTELEDLWMTSNGIDTFEKVEQLQVLSRLETLYLEHNPIYKDFEY
RMRTARILPSLKQLDATEVRR*
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mRNA from alignment at P-wetherbeei_contig1443:5342..7178+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1443.3.2 ID=mRNA_P-wetherbeei_contig1443.3.2|Name=mRNA_P-wetherbeei_contig1443.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1837bp|location=Sequence derived from alignment at P-wetherbeei_contig1443:5342..7178+ (Phaeothamnion wetherbeei SAG_119_79)
CACGGGGAAAAGGGCGAAGGAAAGCACTCGCATATTTGCCACGAGCATGA
TCGCGCGCCGGCGCCATGCGTGACGCCAAAAGATGTTGTAGATTTCGATG
CGGACAGCGAGGAAATCTATGTTGTGGGCACGACTGCGGGCCATGCCAAG
GTGACAAAGATCGCAGGATTGGAGAGGTGTTCGCGATTGCAGGAGCTGAC
GCTCCGATCCTGCTTAATATCCAAGATGGAGGGGCTGGAAGCGCTCACCA
GCCTCACCAAGCTAGAGCTCTACGACAACCAGATTCTCTCCATGGCCTGC
ATGGAATCCCTCGGCCGGCTCGTCGTCCTCGATCTCAGCTACAACCTCAT
CAAGTCGCTGGCGCCGCTGCGGCACTGCCCGCTGCTCGAGGAAGTGTATG
TCGCCCAGAACCGCATCCGCGTCATCGAAGGTCTGGACGGCGCCACGCGG
CTGCGAAAGCTCGACCTGGGCGCCAATCGCATCCGCCGCATCGAGGGCCT
CGCCAACTGCATGGTGCTGGAGGAGCTGTGGTTGGGCAAGAACAAGATCG
ACGTTATTGCGAACCTCGACACGCTGGGCCAGCTGCGGCGACTGGATGTG
CAGGCGAGTTGCTTGCTGTGGCAGTGACGCCTCTTGCCGTTTGCTTTGAA
ATACTGCTGTCGGCAGCGGCGTAAAATAGCATGCTTTGCATTTCTGGCAA
TATGGAAGGAAATGGACTTTCGTTCCTGTCTTCATCGTCATTGGCAGATA
TCAAATTGGCGGTTCAACATGCGGCAGAAGTACTACGCGTCAGACGCGAA
CGCGACAGGCCTTTAATTGCGCAATTCCTTCTATTTTATGCGTCCCTGCC
TGTCTTATTGGACGCTTCCGGACTTGACTCCACAGAGCAACCGCCTGACG
CGCATCTCCGGCCTAGAACGATTGTCCGCGCTCGAGGAGCTCTACCTGGC
GGGCAACGCCATCCTCACCGCCGCCGCGGATTGCGGTAGCGGCGGCGCCG
CCTGCGCCGCCGCTGCCGCCGCCGGCTCGGCCCCACTGGCGGCGCAGGCG
GCGCTGTCGACGCTGGACCTTTCGCGGAACCGGCTGACGGACTTCGACGG
CCTGCTGCACCTGACAGAACTGGAAGACCTGTGGATGACGAGCAACGGCA
TTGACACGTTCGAGAAAGTGGAGCAGCTGCAGGTGCTGTCGCGGCTGGAG
ACGCTCTACCTGGAACACAATCCCATCTACAAGTGAGAGAAGCTGCCGCT
CAGTTTGCCGCCCTTGACTTTTCTTTCTTTTCTCGTCTTCCCTTTCGTTT
TAGTCTTGTGTGGAGCAGTGGTCGGATGGCTGGCGTCTGGAAGCGGGTTC
TGCCCCTCGATAGTTATACGCTGTGATGAACGTACACCTTCTTCCCTCAT
TGCGCGTGGCCACGCTCGGGGAACCGGAATGTTTGCTCTTTTTACTTCCG
CAACCTCGTGGAAGCATAAGAATCAAACCAGGTATTTGTGGGAACTCGGC
AAAGCAGACGCGTTGACACTAACAAGGACATCCTTTCCCGATCCGGCTTT
CCTGCGTCCGGCTTTGTTCCTGCTTTGTCTTTCCGCAGAGATTTCGAGTA
CCGGATGCGCACGGCGAGGATACTGCCGAGCCTCAAGCAGCTCGATGCCA
CGGAGGTCCGGCGGTGACGCCGAGAGCCGGTATCAGCCGGTTGAAGCGGC
ACAGCTGGCGGCTGTATAGCAGGATCACGATACAACGGCAGAAGAAAGGA
GAGACGACGCGGAGACGGAAGCGAAGGAGCAGAGGAGCCGAGGCGTGCTC
GGCGCTCATCTTAAATAAATGCACAAAATTACTCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1443:5342..7178+

>mRNA_P-wetherbeei_contig1443.3.2 ID=mRNA_P-wetherbeei_contig1443.3.2|Name=mRNA_P-wetherbeei_contig1443.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=816bp|location=Sequence derived from alignment at P-wetherbeei_contig1443:5342..7178+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGGGCTGGAAGCGCTCACCAGCCTCACCAAGCTAGAGCTCTACGA
CAACCAGATTCTCTCCATGGCCTGCATGGAATCCCTCGGCCGGCTCGTCG
TCCTCGATCTCAGCTACAACCTCATCAAGTCGCTGGCGCCGCTGCGGCAC
TGCCCGCTGCTCGAGGAAGTGTATGTCGCCCAGAACCGCATCCGCGTCAT
CGAAGGTCTGGACGGCGCCACGCGGCTGCGAAAGCTCGACCTGGGCGCCA
ATCGCATCCGCCGCATCGAGGGCCTCGCCAACTGCATGGTGCTGGAGGAG
CTGTGGTTGGGCAAGAACAAGATCGACGTTATTGCGAACCTCGACACGCT
GGGCCAGCTGCGGCGACTGGATGTGCAGGCGAGTTGCTTGCTCAACCGCC
TGACGCGCATCTCCGGCCTAGAACGATTGTCCGCGCTCGAGGAGCTCTAC
CTGGCGGGCAACGCCATCCTCACCGCCGCCGCGGATTGCGGTAGCGGCGG
CGCCGCCTGCGCCGCCGCTGCCGCCGCCGGCTCGGCCCCACTGGCGGCGC
AGGCGGCGCTGTCGACGCTGGACCTTTCGCGGAACCGGCTGACGGACTTC
GACGGCCTGCTGCACCTGACAGAACTGGAAGACCTGTGGATGACGAGCAA
CGGCATTGACACGTTCGAGAAAGTGGAGCAGCTGCAGGTGCTGTCGCGGC
TGGAGACGCTCTACCTGGAACACAATCCCATCTACAAAGATTTCGAGTAC
CGGATGCGCACGGCGAGGATACTGCCGAGCCTCAAGCAGCTCGATGCCAC
GGAGGTCCGGCGGTGA
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