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Homology
BLAST of mRNA_P-wetherbeei_contig1435.2.1 vs. uniprot
Match: UPI001EEC39DC (LOW QUALITY PROTEIN: protein SSUH2 homolog n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI001EEC39DC) HSP 1 Score: 68.9 bits (167), Expect = 1.090e-8 Identity = 55/179 (30.73%), Postives = 80/179 (44.69%), Query Frame = 3
Query: 75 APPAGYLPMIKGYELLKLGEAW------IPSAPQSERESRVLKPPLSIALDASIDDLTVKEAEEALEMYVGGNWCYGTAPLRDLQVLSTRSSQAFHVNLDTYVERRKFEFAVRPHKQHGVSAASAAAAAPIPTPDYSGVAAPWAVAAEMPALFEDGQVGPADVPGTLTVKDCFHCDGGG 593
APPAG+ + GYE G +PSAP E+ +P + +I ++ + A EA Y+ CY +AP+++ + + L+T+ E R E+ P+ V A + P P APWAVAA+ PA F+D Q VP T +VK C C G G
Sbjct: 33 APPAGFYDSVPGYEGTLAGGGGGFLPPPMPSAPLPAPENLPAQP------NWNITSISEEVAREAFASYISSKCCYSSAPVKEGVITGLDPFNTYRYRLETFAETRSTEWNQEPYTGQHVDAFTQ------PAP------APWAVAAQPPAFFQD-QTQTLRVPYTSSVKPCHACMGMG 192
BLAST of mRNA_P-wetherbeei_contig1435.2.1 vs. uniprot
Match: A0A6A4VZH7_AMPAM (Protein SSUH2 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VZH7_AMPAM) HSP 1 Score: 67.0 bits (162), Expect = 5.620e-8 Identity = 39/129 (30.23%), Postives = 65/129 (50.39%), Query Frame = 3
Query: 219 DDLTVKEAEEALEMYVGGNWCYGTAPLRDLQVLSTRSSQAFHVNLDTYVERRKFEFAVRPHKQHGVSAASAAAAAPIPTPDYSGVAAPWAVAAEMPALFEDGQVGPADVPGTLTVKDCFHCDGGGQLRC 605
D LT E ++AL +V + CYG+AP++D+Q+ + + F L+++VE+R+ ++ P +G+ A P P PW + ALF+D + VP T T++ C C G +RC
Sbjct: 129 DPLTRDEVKDALAAFVAQHCCYGSAPIKDMQIRNVAPTFTFKYTLESFVEKRETKWKFEPFSGNGLPAGGG------PAPQ------PWEIPLTPGALFKDEKK-VLQVPNTQTLRPCHDCQAHGDVRC 244
BLAST of mRNA_P-wetherbeei_contig1435.2.1 vs. uniprot
Match: UPI001884F330 (protein SSUH2 homolog n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884F330) HSP 1 Score: 63.5 bits (153), Expect = 6.840e-7 Identity = 50/176 (28.41%), Postives = 80/176 (45.45%), Query Frame = 3
Query: 75 APPAGYLPMIKGYELLKLGEAWIPSAPQSERESRVLKPPLSIALDASIDDLTVKEAEEALEMYVGGNWCYGTAPLRDLQVLSTRSSQAFHVNLDTYVERRKFEFAVRPHKQHGVSAASAAAAAPIPTPDYSGVAAPWAVAAEMPALFEDGQVGPADVPGTLTVKDCFHCDGGGQLR 602
APPAG ++GY ++ AP S R PP +D L+ E +EAL +V + CYG+ P++D+++ S S F LDT+ E+R+ ++ P K G S A++ A P PW + LF+ + +VP + +++ C C G R
Sbjct: 75 APPAGSFEKVEGYRDTGFNGGFV--APPS-RAVPTAPPPDLPRMDVVQQPLSRGEVKEALAAFVAQHCCYGSGPIKDMEIRSVVPSATFKYTLDTFTEKRETKWKFEPWK--GDSLATSGAPPP----------GPWDMPITPKHLFQK-ETRTLEVPNSQSLRPCHDCQAHGDKR 234
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Seed ortholog | 7739.XP_002597331.1 |
| Preferred name | SSUH2 |
| Model size | 2143 |
| Max annot lvl | 33208|Metazoa |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0007275,GO:0008150,GO:0009653,GO:0009887,GO:0032501,GO:0032502,GO:0042476,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048513,GO:0048731,GO:0048856 |
| Exons | 8 |
| Evalue | 4.42e-11 |
| EggNOG OGs | KOG2813@1|root,KOG2813@2759|Eukaryota,38B75@33154|Opisthokonta,3BBXS@33208|Metazoa,3CSG9@33213|Bilateria,4856W@7711|Chordata |
| Description | odontogenesis |
| Cds size | 1497 |
| COG category | O |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1683186018.7216594-UTR-P-wetherbeei_contig1435:1260..1862 | 1683186018.7216594-UTR-P-wetherbeei_contig1435:1260..1862 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig1435 1261..1862 - |
| 1683186018.8100932-UTR-P-wetherbeei_contig1435:5263..5307 | 1683186018.8100932-UTR-P-wetherbeei_contig1435:5263..5307 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig1435 5264..5307 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1683186018.7311928-CDS-P-wetherbeei_contig1435:1862..1994 | 1683186018.7311928-CDS-P-wetherbeei_contig1435:1862..1994 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1435 1863..1994 - |
| 1683186018.739043-CDS-P-wetherbeei_contig1435:2225..2378 | 1683186018.739043-CDS-P-wetherbeei_contig1435:2225..2378 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1435 2226..2378 - |
| 1683186018.7487996-CDS-P-wetherbeei_contig1435:2887..3542 | 1683186018.7487996-CDS-P-wetherbeei_contig1435:2887..3542 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1435 2888..3542 - |
| 1683186018.7620516-CDS-P-wetherbeei_contig1435:3846..3959 | 1683186018.7620516-CDS-P-wetherbeei_contig1435:3846..3959 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1435 3847..3959 - |
| 1683186018.7713723-CDS-P-wetherbeei_contig1435:4324..4501 | 1683186018.7713723-CDS-P-wetherbeei_contig1435:4324..4501 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1435 4325..4501 - |
| 1683186018.7798665-CDS-P-wetherbeei_contig1435:4720..4817 | 1683186018.7798665-CDS-P-wetherbeei_contig1435:4720..4817 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1435 4721..4817 - |
| 1683186018.7894988-CDS-P-wetherbeei_contig1435:4978..5057 | 1683186018.7894988-CDS-P-wetherbeei_contig1435:4978..5057 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1435 4979..5057 - |
| 1683186018.8008277-CDS-P-wetherbeei_contig1435:5172..5263 | 1683186018.8008277-CDS-P-wetherbeei_contig1435:5172..5263 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig1435 5173..5263 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1435.2.1 >prot_P-wetherbeei_contig1435.2.1 ID=prot_P-wetherbeei_contig1435.2.1|Name=mRNA_P-wetherbeei_contig1435.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=499bp
MSMSQKGIIVAPPAGYLPMIKGYELLKLGEAWIPSAPQSERESRVLKPPL SIALDASIDDLTVKEAEEALEMYVGGNWCYGTAPLRDLQVLSTRSSQAFH VNLDTYVERRKFEFAVRPHKQHGVSAASAAAAAPIPTPDYSGVAAPWAVA AEMPALFEDGQVGPADVPGTLTVKDCFHCDGGGQLRCGQCEGAGINVCAA CRGAKKKVCDPCKGKGYAYRSNAPNVADDCRACRGLGFQHCAPCKGRGDL PCVPCSGRGDFACAACKGHGLLEIAVAMTVTWRTEHVSRVTGQPLPQSLL PAAAPRPPRRRPNSLSSPTSSATGSSASISSAASAAPGGAAAAVVGGRGA SGGSAPAKRGSPSGAAVARASSASASGAGRMQQSAVGAVPPELLKHERGE LIAEAPRGPLVPPLTSPSFPAFVAELSAEMVAASHAAAGRIVIQAHNISR VPLWQVTAKFTMDNKKFIYFVYGDQHLVYETDYPSPYCCGLGYSCVVA* back to topmRNA from alignment at P-wetherbeei_contig1435:1261..5307- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig1435.2.1 ID=mRNA_P-wetherbeei_contig1435.2.1|Name=mRNA_P-wetherbeei_contig1435.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4047bp|location=Sequence derived from alignment at P-wetherbeei_contig1435:1261..5307- (Phaeothamnion wetherbeei SAG_119_79) AAAGCAAGAAAATTTGGGCAAGAACAGGGCATTTCACTCTGCAGATGAGC
ATGTCGCAGAAGGGCATCATTGTTGCTCCTCCGGCGGGATACCTGCCAAT
GATCAAAGGCTATGAACTATTGAAACTTGGCGAAGGTATGCAATCGAGGT
TTGAAAGTGATTTTTGTGTGTTTTCCAACATCGGAGGCATCTGCAGGATG
ACATCTCATTCCCGCCTTCTTGCGACTGCGCCATACCTCTCCCCATGCAG
CATGGATTCCGTCAGCACCCCAGAGTGAGAGAGAGTCTCGAGTACTGAAG
CCGCCGCTCTCGATAGCATTAGATGCGAGGTGCGTTGAAGAGAGAAGGAA
CACCCATGGCTTGCGCCAAGTTCTTTGTTTCACTTTTCGGACGGAGCGTG
TAACCTTCAATGCATCCATCTTTCCACGTCCGCATCCACTTCAAATTTAG
TTTCTTATGCCTTCCTCTTGCCGTTTTGTGTTGTATGCAGCATTGATGAC
TTGACTGTCAAGGAAGCCGAAGAGGCGCTCGAAATGTACGTCGGCGGCAA
CTGGTGCTACGGCACGGCTCCGCTTCGCGACCTCCAGGTAAAGGGAAAGA
AGGAGAGGCGCGTCCCACTTCAGAAATTGCATTGAGACCGTCTTGATCTA
CTCACATTCCCGGTTGGGGCTACGCTGCCCCTATTTAGACTTTCTCTCTG
CGAGTCAGGCCATCTTCTCTTATCGAGTCGCATGGTGCTGTTGCTCTTCT
CCTTCTTCCTCAAACCCTTCTCCTTCTTCCCCCCGGCATTGGCCGGCGGG
CAGCAGGTGCTGAGCACGCGGTCCTCCCAGGCGTTTCACGTCAACCTTGA
CACGTACGTGGAGCGCCGCAAGTTCGAGTTTGCAGTCCGCCCCCACAAGC
AGCATGGCGTTTCCGCCGCTTCTGCGGCGGCGGCGGCCCCCATCCCGACA
CCGGACTACAGTGGCGTCGCAGCGCCCTGGGCGGTGAGTGAGTGTGAAGG
TTTTTGGCATTTGCGTACTGTGTGGAGCAATGGGGGCGATCAGGCGAATC
TTAAGGTGTGTCCCTCGTCGTGCGGCCATTTTGGCGGTCGCGTCTGCAGA
GGCCGCTGCTTTCTTTCTTCGCCAGCCGGTTTCGTTTTCGTTTTGTATAC
TGGTCGCTTCTTGACCGCTTGCGGCTCGGGCTTTTCCCTCCGAGCCGCTT
GGTCGCCTGTCCGTCGACTGTGGCGTTGATCGATCCGATTTGGGCCGCTC
GGGAACGAAAGTATTTGGTTATTTCCTCTTTCCGGTGTTTGCTTTGGTTC
AGTTTTGCCTACCGATCCGCTTGGCAATTCACCGCGAGCATGACGCAGGT
GGCGGCGGAGATGCCAGCGCTGTTTGAGGACGGGCAGGTGGGCCCCGCCG
ACGTGCCGGGCACCCTCACCGTCAAGGACTGCTTCCACTGCGACGGCGGC
GGCCAGCTCAGGTGGGTGGGTTGCGGTGAGCAGGCAGGTGCCGGGATTTT
GGGCGAGGGGCGTGCGAGGCGACGGCTGCTGATGCTGTGGCGTCGTGTGC
TGCTTTCGGAACATTGCTAAGAGTTCATCGGCAGGCAAAACACGGAGATT
CGCAAGCCTGAAATGAGGGCCGAGACAGCGTTCGATTTCCACCTTAAGTG
GAAAAATGGCCGCAGAAATTCTGAAACTCGCTTCTTGCTTTGCCACCCGG
CAAACCTCCCGGCCCGCCACAATCAACCAACCGACCGATCGAACGTTTAC
GGCGCCGCCCGGCAGGTGTGGGCAGTGCGAGGGCGCCGGCATCAACGTGT
GCGCGGCATGCCGCGGCGCCAAGAAGAAGGTCTGCGATCCCTGCAAGGGG
AAGGGTTACGCGTACCGGTCCAACGCGCCCAACGTCGCCGACGACTGCCG
CGCCTGCCGCGGCCTCGGCTTTCAGCACTGTGCGCCCTGCAAGGGCCGCG
GTGACCTGCCCTGCGTGCCGTGCAGCGGCCGGGGGGACTTCGCGTGCGCC
GCGTGCAAGGGCCACGGCCTCCTGGAGATCGCCGTCGCGATGACGGTCAC
GTGGCGGACGGAGCACGTCTCGCGCGTGACCGGACAACCGCTGCCGCAGT
CCCTCCTCCCCGCGGCGGCTCCGCGCCCGCCGCGTCGGCGGCCCAACTCG
TTGTCGTCTCCTACGTCCTCCGCGACGGGCTCTTCCGCCTCCATTTCTTC
TGCTGCTTCCGCCGCGCCGGGCGGTGCCGCTGCAGCCGTCGTCGGAGGGA
GGGGCGCTTCTGGGGGCTCGGCGCCGGCGAAGAGGGGCAGTCCGTCTGGC
GCGGCGGTGGCCCGGGCGTCGTCGGCGTCGGCATCGGGCGCGGGTAGGAT
GCAACAATCTGCTGTCGGGGCGGTGCCGCCAGAGCTGCTGAAGCATGAGC
GGGGGGAGCTCATTGCCGAGGTGCGTTGGGTTAATTTTTCGTGTTGCTTT
GGCTGGCGGCTCGTTCCGAGTGTGTCTTTCTCCTCTTGGTATCCGCATAT
TTGCTGAATGAAGTTGTTGCAGGGAACCGGTGGCCGCCGTTTTGGCGAGC
CGGTCTGTCAGTTGTCTCTTCTCTCTTTTCCACTCATTTCTCGCACAACC
GGTACATCGCTTGCTGCCGCTCTTACCATGTGCCGCTTCTGCTGCCTGTT
TTTTACCTGCTCCCGCTGCCATCATCCGCCACCTGCCGCTGCCGCTGTCG
CTCGGCTCCCACCGCCGAGGCTGCCACGCCGCTCCCGCATCATGCTGCCG
CTTTCTACTGCTACCCGGTCGCTGTCGCTTGCCGCTGTTACCGCCACCGC
CGGCGCCGCTACCTCTCGCCGCCATCGTCTATTGTCGCGGTTGCCGCCGT
TGCCCGCTACCGCGTTACGGCTGCTGCCGCCGCCGCTTGCTGCCTCCACC
ACCGCCGCTGCAACACGCAAACGCGACAGGCGCCGCGGGGGCCTTTGGTA
CCGCCGCTCACAAGCCCGAGCTTCCCGGCGTTCGTCGCTGAGCTGTCGGC
CGAAATGGTGGCGGCGTCGCATGCCGCGGCGGGCCGCATCGTGATCCAGG
CGCACAACATCAGCAGGGTGCCCCTCTGGCAGGTGAATTGTGGCTGGTGG
CATTGGGTGTCCTGGCTGCAGCGGAGAAGAGGGTTTTTTGCACCGCTTTT
CAGAGTCACTGAAAGATATAAGACTTCTCCTTGTGGCGTTTTTGCTTCTT
CCCTTCCAATTTATTGGTTTATTTTTTTTGATCCTGGTGGCGGCTCCATG
ATACGTCGAAAACCGGGTTCGATTAGACGACTTTCTTCCTTCTGTCCTTC
CTCCCTTTCGTAGGTGACTGCAAAGTTCACGATGGACAACAAAAAATTCA
TCTACTTCGTCTACGGGGACCAGCACTTGGTGTATGAGACAGACTATCCA
TCGCCGTATTGCTGCGGCCTCGGCTACTCGTGCGTTGTTGCCTGAGCAGG
CGGCGGATCGAGCGCGGCTTTCTCGGCCTGGCTCGGTTAAGGGCCGATTA
GCGCAAGTCAAGCGCTGGGTTAGCGTAGGGCTGGAGGCGGCCGGCCGCTT
GCGACGTGTCGCTGGGGCGCCACGCCATTCGGTTTTATGTAACTCGCGAC
GATGGTAGCGGTGACTGCACTGCGGCAGGATGGGCAGCGGCGCACAATCT
GCCATCGGATTTTGCAGCCGGGAAGACCGAGGGCGCTAAATTCGCCAAGA
GGCAGCGTTGTAGCTCGAGGCAGATTTTGTACTGGACAAAGCGTGGTGCG
GACTCAGGCTTCTTTTGCGTGGAGTCATGCAGGGTGTGTGGCGGGCAGGA
GGGTCTGAAGGTTTTCTGTGATGTTTGCGTAGCGCTTTCTCTCCCTTTCT
TCTTTCTGATAGTTTTGACCAGAAGCGACAAAGACAGAAAGCAGCATTCA
CATGCCTCTCGTTTGTGCGCGCTCACACTCCTGACGTACTGCAGCCATTG
GTCATATCGTCCGGGCGGTGAGCAGTTGTGCATAAAACCGGCTTAGGCAA
ACAATTGTTTGTATGGAACAGTCCTCTTAATAAATGTTACTGTAAAG back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig1435:1261..5307- >mRNA_P-wetherbeei_contig1435.2.1 ID=mRNA_P-wetherbeei_contig1435.2.1|Name=mRNA_P-wetherbeei_contig1435.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1497bp|location=Sequence derived from alignment at P-wetherbeei_contig1435:1261..5307- (Phaeothamnion wetherbeei SAG_119_79) ATGAGCATGTCGCAGAAGGGCATCATTGTTGCTCCTCCGGCGGGATACCT GCCAATGATCAAAGGCTATGAACTATTGAAACTTGGCGAAGCATGGATTC CGTCAGCACCCCAGAGTGAGAGAGAGTCTCGAGTACTGAAGCCGCCGCTC TCGATAGCATTAGATGCGAGCATTGATGACTTGACTGTCAAGGAAGCCGA AGAGGCGCTCGAAATGTACGTCGGCGGCAACTGGTGCTACGGCACGGCTC CGCTTCGCGACCTCCAGGTGCTGAGCACGCGGTCCTCCCAGGCGTTTCAC GTCAACCTTGACACGTACGTGGAGCGCCGCAAGTTCGAGTTTGCAGTCCG CCCCCACAAGCAGCATGGCGTTTCCGCCGCTTCTGCGGCGGCGGCGGCCC CCATCCCGACACCGGACTACAGTGGCGTCGCAGCGCCCTGGGCGGTGGCG GCGGAGATGCCAGCGCTGTTTGAGGACGGGCAGGTGGGCCCCGCCGACGT GCCGGGCACCCTCACCGTCAAGGACTGCTTCCACTGCGACGGCGGCGGCC AGCTCAGGTGTGGGCAGTGCGAGGGCGCCGGCATCAACGTGTGCGCGGCA TGCCGCGGCGCCAAGAAGAAGGTCTGCGATCCCTGCAAGGGGAAGGGTTA CGCGTACCGGTCCAACGCGCCCAACGTCGCCGACGACTGCCGCGCCTGCC GCGGCCTCGGCTTTCAGCACTGTGCGCCCTGCAAGGGCCGCGGTGACCTG CCCTGCGTGCCGTGCAGCGGCCGGGGGGACTTCGCGTGCGCCGCGTGCAA GGGCCACGGCCTCCTGGAGATCGCCGTCGCGATGACGGTCACGTGGCGGA CGGAGCACGTCTCGCGCGTGACCGGACAACCGCTGCCGCAGTCCCTCCTC CCCGCGGCGGCTCCGCGCCCGCCGCGTCGGCGGCCCAACTCGTTGTCGTC TCCTACGTCCTCCGCGACGGGCTCTTCCGCCTCCATTTCTTCTGCTGCTT CCGCCGCGCCGGGCGGTGCCGCTGCAGCCGTCGTCGGAGGGAGGGGCGCT TCTGGGGGCTCGGCGCCGGCGAAGAGGGGCAGTCCGTCTGGCGCGGCGGT GGCCCGGGCGTCGTCGGCGTCGGCATCGGGCGCGGGTAGGATGCAACAAT CTGCTGTCGGGGCGGTGCCGCCAGAGCTGCTGAAGCATGAGCGGGGGGAG CTCATTGCCGAGGCGCCGCGGGGGCCTTTGGTACCGCCGCTCACAAGCCC GAGCTTCCCGGCGTTCGTCGCTGAGCTGTCGGCCGAAATGGTGGCGGCGT CGCATGCCGCGGCGGGCCGCATCGTGATCCAGGCGCACAACATCAGCAGG GTGCCCCTCTGGCAGGTGACTGCAAAGTTCACGATGGACAACAAAAAATT CATCTACTTCGTCTACGGGGACCAGCACTTGGTGTATGAGACAGACTATC CATCGCCGTATTGCTGCGGCCTCGGCTACTCGTGCGTTGTTGCCTGA back to top
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