mRNA_P-wetherbeei_contig14291.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14291.2.1
Unique NamemRNA_P-wetherbeei_contig14291.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14291.2.1 vs. uniprot
Match: A0A836C8A2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8A2_9STRA)

HSP 1 Score: 148 bits (373), Expect = 4.690e-38
Identity = 76/165 (46.06%), Postives = 100/165 (60.61%), Query Frame = 1
Query:   40 NPFDDASWWNRWSFSFVGPLLRLGASRALQAEDLYPLSSHDDVATVVANVSDAWH-----ATVKAGRPSLWRAAFVTFRTDAAVAAFYTILESVCKISQPVVLRELLSWMGGESASGHNAEWYGWAMALTLGGLGMVQTGIHHVLFYYTIRAGWNLKNATMGLIH 519
            NP DDAS  +RW++ FV PLL +G  R LQ EDLY L+ HD +A VV  V+  W      A V   R S  RA F  FR D  V   +T LES  KI QPV+L +L++W+ G   +G  A W+GW MA  +G   + QT +HH+LFY ++R GWN+K A  G++H
Sbjct:  164 NPRDDASLLSRWTYHFVAPLLDIGQKRPLQEEDLYELAEHDKIARVVGGVTQEWEQLLARAKVTGKRVSYTRALFNNFRKDIIVTGVFTCLESALKILQPVLLYQLIAWLSG---AGEQAAWFGWTMAAAMGVDAIGQTLVHHILFYLSMRLGWNMKMAASGMVH 325          
BLAST of mRNA_P-wetherbeei_contig14291.2.1 vs. uniprot
Match: F2U6M5_SALR5 (Multidrug resistance associated protein 1 n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U6M5_SALR5)

HSP 1 Score: 110 bits (274), Expect = 9.330e-25
Identity = 59/173 (34.10%), Postives = 96/173 (55.49%), Query Frame = 1
Query:   25 ESRAPNPFDDASWWNRWSFSFVGPLLRLGASRALQAEDLYPLSSHDDVATVVANVSDAWHATVKA--------GRPSLWRAAFVTFRTDAAVAAFYTILESVCKISQPVVLRELLSWMGGESASGHNAEWYGWAMALTLGGLGMVQTGIHHVLFYYTIRAGWNLKNATMGLIH 519
            E+  P+P D ASWW R ++++  PL+ + A   +  + L PL+ HD++   V  +  AW+   +         GRPSL RAA     T+  ++ F  + ES+  I QP++LR L++W+  E A  +    +G A+ L L    + Q  +HH L++YT+R GWNL+   +GL+H
Sbjct:  115 ETEGPSPADLASWWGRTAYTYGKPLIDIAAKGPVNLKHLPPLAKHDNIDYTVGRLEKAWNEEKQRKQGAGGGKGRPSLMRAAARAHLTEIIISGFLAVGESLAYIVQPILLRLLVAWIQDEDAKDYGTG-FGLAIGLVL--FSIFQAVVHHFLYFYTMRMGWNLRIGFIGLVH 284          
BLAST of mRNA_P-wetherbeei_contig14291.2.1 vs. uniprot
Match: A0A7S1NI94_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NI94_9EUGL)

HSP 1 Score: 105 bits (262), Expect = 3.520e-23
Identity = 59/161 (36.65%), Postives = 88/161 (54.66%), Query Frame = 1
Query:   37 PNPFDDASWWNRWSFSFVGPLLRLGASRALQAEDLYPLSSHDDVATVVANVSDAWHATVKAGRPSLWRAAFVTFRTDAAVAAFYTILESVCKISQPVVLRELLSWMGGESASGHNAEWYGWAMALTLGGLGMVQTGIHHVLFYYTIRAGWNLKNATMGLIH 519
            P+ FD A+ + +W+F FV PL+  G   +L   DLY  S  D  A + + +   ++   K      + A + TF+ +  V++  TILESV KI  PV+L   ++W+    A      W G    + LG L  +Q G+HHVLF+YT+R GWN + AT G+IH
Sbjct:   12 PSEFDAANAFAKWTFMFVSPLIHKGGQTSLNQADLYQTSRDDFAAVLTSKLEGQYYCHGK-----YYVALYHTFKREFWVSSMLTILESVLKIGLPVILWYFITWLTDVQAP----LWVGVTYGVLLGLLTAIQVGVHHVLFFYTMRVGWNARIATTGVIH 163          
BLAST of mRNA_P-wetherbeei_contig14291.2.1 vs. uniprot
Match: A9V948_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V948_MONBE)

HSP 1 Score: 105 bits (261), Expect = 5.130e-23
Identity = 56/167 (33.53%), Postives = 93/167 (55.69%), Query Frame = 1
Query:   22 AESRAPNPFDDASWWNRWSFSFVGPLLRLGASRALQAEDLYPLSSHDDVATVVANVSDAWHAT-VKAGRPSLWRAAFVTFRTDAAVAAFYTILESVCKISQPVVLRELLSWMGGESASGHNAEWYGWAMALTLGGLGMVQTGIHHVLFYYTIRAGWNLKNATMGLIH 519
            A S  P+P+D +S++ R +FS+V PLL++GA R L  +DL  L+  D    +V  +   W     + G P+L RAA   +R +     +YT+ ES   + QPV++   + W+ G +  G++   YGW + + L     +Q   HH+L++ T+R GWN++    GL+H
Sbjct:   44 APSAEPSPYDVSSFFQRVTFSYVSPLLQIGAKRELAFDDLPALAKRDASERIVKGLLHHWRQLQAETGHPTLLRAAARFYRKEIWWGVWYTLCESAFALIQPVLVFWFVQWLEGNTDYGND---YGWGIVIALATASFMQAITHHLLYFETMRLGWNMRIGMTGLVH 207          
BLAST of mRNA_P-wetherbeei_contig14291.2.1 vs. uniprot
Match: A0A482S887_9ARCH (ABC transmembrane type-1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S887_9ARCH)

HSP 1 Score: 84.3 bits (207), Expect = 6.940e-17
Identity = 55/175 (31.43%), Postives = 87/175 (49.71%), Query Frame = 1
Query:   22 AESRAPNPFDDASWWNRWSFSFVGPLLRLGASRALQAEDLYPLSSHDDVATVVANVSDA---------WHATVKAGRPSLWRAAFVTFRTDAAVAAFYTILESVCKISQPVVLRELLSWMGGESASGHNAEWYGWAMALTLGGLGMVQTGIHHVLFYYTIRAGWNLKNATMGLIH 519
            +E  A +P+D AS++N+W+FS +   L+LG  R L   DL      D    +   +            W AT     P L          +  +A FYT+LE + +IS P++L  LL  +  ++ +    + + WA  L++  +   QT IHHVLF++++RAGWN K A   LI+
Sbjct:    7 SEVHAESPWDKASFFNKWTFSVINDTLKLGMERTLDFPDLMDFPHKDKAQNLKERLKTLYFDGREKKHWVATYFPFIPHLLICLLRLSWVECLIATFYTVLEGLIRISLPLILIFLLRALEAQNVN----QAFLWAGILSV--VSFSQTAIHHVLFFFSMRAGWNWKIACTALIY 175          
BLAST of mRNA_P-wetherbeei_contig14291.2.1 vs. uniprot
Match: A0A2P6TEN6_CHLSO (Multidrug resistance-associated 1 isoform X3 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TEN6_CHLSO)

HSP 1 Score: 79.0 bits (193), Expect = 6.790e-14
Identity = 47/161 (29.19%), Postives = 76/161 (47.20%), Query Frame = 1
Query:   76 SFSFVGPLLRLGASRALQAEDLYPLSSHDDVATVVANVSDAWHATVKAGRPS----------LWRAAFVTFRTDAAVAAFYTILESVCKISQPVVLRELLSWMGGESASGHNAE----WYGWAMALTLGGLGMVQTGIHHVLFYYTIRAGWNLKNATMGLI 516
            +++FV PLL LGA   +  +         D A ++A   DA +  VKA + +          LWR  +  +     +   +T  E  C++  P+VLR+LL+W+ G  A+  N E    W GW  A  L   G     IHH LF+Y +R G++++   +  +
Sbjct:   54 TYTFVSPLLALGAKNKINEDTAPAYLPTSDTAQLLARQFDATYTRVKAEQAARRRPCSPAGLLWRTYWRLYHWRIVIHLLWTFTEIACRVGGPLVLRQLLNWLSGYEATDGNTELYPTWKGWMWAGVLSIFGYCYACIHHQLFWYGMRMGFDMRQQAVAAV 214          
BLAST of mRNA_P-wetherbeei_contig14291.2.1 vs. uniprot
Match: A0A2P6VCG6_9CHLO (Multidrug resistance-associated 4 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VCG6_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 7.920e-13
Identity = 50/171 (29.24%), Postives = 82/171 (47.95%), Query Frame = 1
Query:   46 FDDASWWNRWSFSFVGPLLRLGASRALQAEDLYPLSSHDDVATVVANVSDAWHATVKA------GRPS----LWRAAFVTFRTDAAVAAFYTILESVCKISQPVVLRELLSWMGGESASGHNAE----WYGWAMALTLGGLGMVQTGIHHVLFYYTIRAGWNLKNATMGLI 516
            F  AS  ++ ++ FV PL+ LGA   +  +         D A  ++   DA +ATV+A       R S    LWR+ +  +R   A    +T  E   ++  P++LR+LL++  G   S  +AE    W GW  A  +G  G     IHH LF+Y +R G++++   +  +
Sbjct:   70 FQQASLLSKMTYRFVSPLVSLGARGKIDEDTAAAYLPESDTAAALSKQFDAAYATVQAEAARRGARASPAGLLWRSYWRLYRWRVAGHLAWTFAEIGVRVGSPIILRQLLNFFSGWKESNGDAELYPQWRGWMWAGIMGAFGYCYAFIHHQLFWYGMRMGFDMRQQAIAAV 240          
BLAST of mRNA_P-wetherbeei_contig14291.2.1 vs. uniprot
Match: UPI00094EC922 (probable multidrug resistance-associated protein lethal(2)03659 isoform X1 n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=UPI00094EC922)

HSP 1 Score: 74.7 bits (182), Expect = 1.950e-12
Identity = 51/164 (31.10%), Postives = 82/164 (50.00%), Query Frame = 1
Query:   37 PNPFDDASWWNRWSFSFVGPLLRLGASRALQAEDLYP-LSSHDDVATVVAN-VSDAWHATVKAGRPSLWRAAFVTFRTDAA-VAAFYTILESVCKISQPVVLRELLSWMGGESASGHNAEWYGWAMALTLGGLGMVQTGIHHVLFYYTIRAGWNLKNATMGLIH 519
            P+P+  A++++R  F+++ PL   G  + L  EDLYP L  HD  AT + N +S  W   ++   PSLWRA F  F  + A +A  +  +E VC++SQP++L +LL +    S       +    + +    L M+     H   YY    G  +K A   L++
Sbjct:   15 PHPYRKANFFSRMFFTWLFPLFYQGYHKDLSEEDLYPSLRQHD--ATFLGNRLSSEWEKQLQTKEPSLWRALFAVFGCEMAWLALLHLFIELVCRLSQPLILAQLLQYYEPHSTMTRREAFIYSGLMVASPALVMI---CQHNFMYYQFVMGVKIKIAATALVY 173          
BLAST of mRNA_P-wetherbeei_contig14291.2.1 vs. uniprot
Match: A0A074RTM7_9AGAM (Multidrug resistance-associated ABC transporter n=2 Tax=Rhizoctonia solani AG-3 TaxID=1086053 RepID=A0A074RTM7_9AGAM)

HSP 1 Score: 71.2 bits (173), Expect = 3.140e-11
Identity = 47/167 (28.14%), Postives = 82/167 (49.10%), Query Frame = 1
Query:   19 EAESRAPNPFDDASWWNRWSFSFVGPLLRLGASRALQAEDLYPLSSHDDVATVVANVSDAWHATVKAGRPSLWRAAFVTFRTDAAVAAFYTILESVCKISQPVVLRELLSWMGGESASGHNAEWYGWAMALTLGGLGMVQTGIHHVLFYYTIRAGWNLKNATMGLIH 519
            EAE R   P++ A+ ++R +F ++ PL++LG SR +  +D+  LS  D   ++   +   W   + +  PSLW A    +    A AAF  I       ++P +LR LL+++    A      + GWA+A+ +  L +VQT + H  F      G  ++   +  I+
Sbjct:  202 EAEEREL-PYERANVYSRLTFGWMTPLMKLGYSRFISEKDMSALSPSDTAHSLSDELQKHWSRQLDSKNPSLWGALARAYGGQYANAAFIKIARDFLSFAEPQLLRFLLAFIARYQAGKTQNAFVGWAIAVAMFVLSVVQTAMLHQYFQICFITGMRVRAGLVTAIY 367          
BLAST of mRNA_P-wetherbeei_contig14291.2.1 vs. uniprot
Match: A0A671US81_SPAAU (Multidrug resistance-associated protein 4-like n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671US81_SPAAU)

HSP 1 Score: 70.9 bits (172), Expect = 4.200e-11
Identity = 49/169 (28.99%), Postives = 87/169 (51.48%), Query Frame = 1
Query:   40 NPFDDASWWNRWSFSFVGPLLRLGASRALQAEDLYPLSSHDDVATVVANVSDAWH-----ATVKAGRPSLWRAAFVTFRTDAAVAAFYTILESVCKISQPVVLRELLSWM----GGESASGHNAEWYGWAMALTLGGLGMVQTGIHHVLFYYTIRAGWNLKNATMGLIH 519
            NP   A  +++  F ++ PL R+G  R L+ +DLY + + D    +   +   W      AT +  +P L +A    +    AV  F+T+LE V K+ QPV+L  L+ +      G+S + H +   G+A AL++  +G+    +HH+ F++  RAG  ++ A   +I+
Sbjct:   11 NPAATAGLFSKIFFWWLNPLFRIGYKRRLEEDDLYEVLAEDGSERLGQELHRHWDHEVQMATKELRKPQLSKAIIKCYWKPYAVLGFFTLLEEVIKVIQPVILGLLIRYFEDYDSGDSGALHRS--LGYAAALSICSIGLAL--LHHLYFFHVQRAGMKIRVAMCHMIY 175          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14291.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8A2_9STRA4.690e-3846.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F2U6M5_SALR59.330e-2534.10Multidrug resistance associated protein 1 n=1 Tax=... [more]
A0A7S1NI94_9EUGL3.520e-2336.65Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A9V948_MONBE5.130e-2333.53Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A482S887_9ARCH6.940e-1731.43ABC transmembrane type-1 domain-containing protein... [more]
A0A2P6TEN6_CHLSO6.790e-1429.19Multidrug resistance-associated 1 isoform X3 n=1 T... [more]
A0A2P6VCG6_9CHLO7.920e-1329.24Multidrug resistance-associated 4 n=1 Tax=Micracti... [more]
UPI00094EC9221.950e-1231.10probable multidrug resistance-associated protein l... [more]
A0A074RTM7_9AGAM3.140e-1128.14Multidrug resistance-associated ABC transporter n=... [more]
A0A671US81_SPAAU4.200e-1128.99Multidrug resistance-associated protein 4-like n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14291contigP-wetherbeei_contig14291:504..1022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog946362.XP_004995011.1
PFAMsABC_membrane,ABC_tran
Model size519
Max annot lvl33154|Opisthokonta
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.53e-25
EggNOG OGsCOG1132@1|root,KOG0054@2759|Eukaryota,38CH6@33154|Opisthokonta
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size519
COG categoryQ
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186016.4945955-CDS-P-wetherbeei_contig14291:503..10221683186016.4945955-CDS-P-wetherbeei_contig14291:503..1022Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14291 504..1022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14291.2.1prot_P-wetherbeei_contig14291.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14291 504..1022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14291.2.1

>prot_P-wetherbeei_contig14291.2.1 ID=prot_P-wetherbeei_contig14291.2.1|Name=mRNA_P-wetherbeei_contig14291.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
MKVRSQEAESRAPNPFDDASWWNRWSFSFVGPLLRLGASRALQAEDLYPL
SSHDDVATVVANVSDAWHATVKAGRPSLWRAAFVTFRTDAAVAAFYTILE
SVCKISQPVVLRELLSWMGGESASGHNAEWYGWAMALTLGGLGMVQTGIH
HVLFYYTIRAGWNLKNATMGLIH
back to top

mRNA from alignment at P-wetherbeei_contig14291:504..1022+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14291.2.1 ID=mRNA_P-wetherbeei_contig14291.2.1|Name=mRNA_P-wetherbeei_contig14291.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig14291:504..1022+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGTGAGATCGCAAGAAGCTGAAAGCAGGGCACCAAATCCTTTTGA TGACGCGTCGTGGTGGAATAGGTGGAGCTTCAGCTTTGTCGGCCCCCTGC TTCGCCTGGGAGCGTCACGGGCGCTCCAGGCGGAGGACCTCTATCCGCTC TCGAGCCACGACGACGTTGCCACGGTCGTGGCAAACGTCAGCGATGCATG GCATGCCACCGTGAAAGCTGGCCGCCCTTCCCTCTGGCGAGCTGCCTTCG TCACCTTCCGCACCGACGCCGCCGTCGCCGCCTTCTACACCATCCTCGAG TCCGTCTGCAAGATCAGCCAGCCCGTCGTGCTTCGGGAACTGCTGTCCTG GATGGGCGGCGAATCGGCGTCCGGCCACAACGCCGAGTGGTACGGCTGGG CGATGGCGCTGACGCTCGGCGGGCTCGGAATGGTGCAGACCGGCATCCAC CACGTTCTCTTCTATTACACCATCAGGGCCGGCTGGAATTTAAAAAACGC TACAATGGGGCTTATCCAT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14291:504..1022+

>mRNA_P-wetherbeei_contig14291.2.1 ID=mRNA_P-wetherbeei_contig14291.2.1|Name=mRNA_P-wetherbeei_contig14291.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig14291:504..1022+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGTGAGATCGCAAGAAGCTGAAAGCAGGGCACCAAATCCTTTTGA
TGACGCGTCGTGGTGGAATAGGTGGAGCTTCAGCTTTGTCGGCCCCCTGC
TTCGCCTGGGAGCGTCACGGGCGCTCCAGGCGGAGGACCTCTATCCGCTC
TCGAGCCACGACGACGTTGCCACGGTCGTGGCAAACGTCAGCGATGCATG
GCATGCCACCGTGAAAGCTGGCCGCCCTTCCCTCTGGCGAGCTGCCTTCG
TCACCTTCCGCACCGACGCCGCCGTCGCCGCCTTCTACACCATCCTCGAG
TCCGTCTGCAAGATCAGCCAGCCCGTCGTGCTTCGGGAACTGCTGTCCTG
GATGGGCGGCGAATCGGCGTCCGGCCACAACGCCGAGTGGTACGGCTGGG
CGATGGCGCTGACGCTCGGCGGGCTCGGAATGGTGCAGACCGGCATCCAC
CACGTTCTCTTCTATTACACCATCAGGGCCGGCTGGAATTTAAAAAACGC
TACAATGGGGCTTATCCAT
back to top