mRNA_P-wetherbeei_contig14291.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14291.1.1
Unique NamemRNA_P-wetherbeei_contig14291.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14291.1.1 vs. uniprot
Match: D7FLL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL5_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 4.430e-33
Identity = 59/70 (84.29%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:    1 MGIIKSGKVVVLLAGRYAGRKAVVVKSFDDGAADRKFGHAMVAGIDRYPRKVTKAMSKDKVKKRSKVKPF 210
            MGIIKSGKVVVLLAGRYAGRKA+VVK FD+G+ +RKFGHA+VAGIDRYPR+VTKAMSKDK+KKR+K+KPF
Sbjct:   21 MGIIKSGKVVVLLAGRYAGRKAIVVKPFDEGSENRKFGHAIVAGIDRYPRRVTKAMSKDKIKKRTKLKPF 90
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BLAST of mRNA_P-wetherbeei_contig14291.1.1 vs. uniprot
Match: M4B173_HYAAE (Uncharacterized protein n=21 Tax=Oomycota TaxID=4762 RepID=M4B173_HYAAE)

HSP 1 Score: 114 bits (284), Expect = 7.130e-31
Identity = 56/70 (80.00%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 MGIIKSGKVVVLLAGRYAGRKAVVVKSFDDGAADRKFGHAMVAGIDRYPRKVTKAMSKDKVKKRSKVKPF 210
            MGI+K+GKVVVLL GR+AGRKA+VVK+FD+G  DRKFGHA+VAGIDRYPRKVT++MSK KVK+RSKVKPF
Sbjct:    1 MGIVKNGKVVVLLNGRFAGRKAIVVKTFDEGRGDRKFGHAIVAGIDRYPRKVTRSMSKAKVKQRSKVKPF 70
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BLAST of mRNA_P-wetherbeei_contig14291.1.1 vs. uniprot
Match: A0A7S4SWS4_9DINO (60S ribosomal protein L27 (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SWS4_9DINO)

HSP 1 Score: 113 bits (283), Expect = 9.830e-31
Identity = 56/70 (80.00%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 MGIIKSGKVVVLLAGRYAGRKAVVVKSFDDGAADRKFGHAMVAGIDRYPRKVTKAMSKDKVKKRSKVKPF 210
            MGIIKSGKVVV+LAGRYAGRKAVVVK++DDG+ DRKF HAMV GIDRYP+KVTK M+K K+ KRSK+KPF
Sbjct:    8 MGIIKSGKVVVVLAGRYAGRKAVVVKTYDDGSIDRKFSHAMVVGIDRYPKKVTKGMTKTKITKRSKMKPF 77
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BLAST of mRNA_P-wetherbeei_contig14291.1.1 vs. uniprot
Match: A0A836CBN1_9STRA (60S ribosomal protein L27 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN1_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.920e-30
Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    1 MGIIKSGKVVVLLAGRYAGRKAVVVKSFDDGAADRKFGHAMVAGIDRYPRKVTKAMSKDKVKKRSKVKPF 210
            MGIIK+GKVV++LAGRYAGRKA+VVK++D G+ADRKF HA+VAGIDRYPRKVTK+MSK KV KRSK KPF
Sbjct:    1 MGIIKAGKVVIMLAGRYAGRKAIVVKAYDSGSADRKFTHALVAGIDRYPRKVTKSMSKVKVAKRSKCKPF 70
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BLAST of mRNA_P-wetherbeei_contig14291.1.1 vs. uniprot
Match: A0A0N7L408_PLAHL (60s ribosomal protein l27 n=2 Tax=Sar TaxID=2698737 RepID=A0A0N7L408_PLAHL)

HSP 1 Score: 111 bits (278), Expect = 5.340e-30
Identity = 55/70 (78.57%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    1 MGIIKSGKVVVLLAGRYAGRKAVVVKSFDDGAADRKFGHAMVAGIDRYPRKVTKAMSKDKVKKRSKVKPF 210
            MGI+K+GKVVVLL GR+AGRKA+VVK+FD+G  DRKFGHA+VAGIDRYPRKVT+AMSK K+ +RSKVKPF
Sbjct:    1 MGIVKNGKVVVLLNGRFAGRKAIVVKTFDEGKGDRKFGHAIVAGIDRYPRKVTRAMSKAKLLRRSKVKPF 70
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BLAST of mRNA_P-wetherbeei_contig14291.1.1 vs. uniprot
Match: A0A067BL31_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BL31_SAPPC)

HSP 1 Score: 111 bits (278), Expect = 5.810e-30
Identity = 54/70 (77.14%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 MGIIKSGKVVVLLAGRYAGRKAVVVKSFDDGAADRKFGHAMVAGIDRYPRKVTKAMSKDKVKKRSKVKPF 210
            MGI+K+GKVVVLL GRYAGRKA+VVK++D+G  DRKFGHA+VAGIDRYPRK+T++M K KV KRSKVKPF
Sbjct:    1 MGIVKNGKVVVLLNGRYAGRKAIVVKTYDEGHGDRKFGHAIVAGIDRYPRKITRSMGKKKVAKRSKVKPF 70
[Close]
BLAST of mRNA_P-wetherbeei_contig14291.1.1 vs. uniprot
Match: A0A2D4BF17_PYTIN (60S ribosomal protein L27 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2D4BF17_PYTIN)

HSP 1 Score: 110 bits (276), Expect = 1.170e-29
Identity = 54/70 (77.14%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    1 MGIIKSGKVVVLLAGRYAGRKAVVVKSFDDGAADRKFGHAMVAGIDRYPRKVTKAMSKDKVKKRSKVKPF 210
            MGI+K+GKVV++L GR+AGRKAVVVK+ D+G  DRKFGHA+VAGIDRYPRKVT+AMSK K+KK+SKVKPF
Sbjct:    1 MGIVKNGKVVIMLNGRFAGRKAVVVKTHDEGHGDRKFGHAIVAGIDRYPRKVTRAMSKTKLKKKSKVKPF 70
[Close]
BLAST of mRNA_P-wetherbeei_contig14291.1.1 vs. uniprot
Match: A0A8J5DSJ1_9DIPT (60S ribosomal protein L27 n=3 Tax=Sciaroidea TaxID=41830 RepID=A0A8J5DSJ1_9DIPT)

HSP 1 Score: 109 bits (273), Expect = 2.590e-29
Identity = 52/68 (76.47%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    7 IIKSGKVVVLLAGRYAGRKAVVVKSFDDGAADRKFGHAMVAGIDRYPRKVTKAMSKDKVKKRSKVKPF 210
            I+KSGKVV++L GRYAGRKAVVVK+FDDG AD++FGHA++AGIDRYPRKVTK M K K+KK+SK+KPF
Sbjct:    4 IMKSGKVVIVLCGRYAGRKAVVVKTFDDGTADKQFGHALIAGIDRYPRKVTKKMGKAKLKKKSKIKPF 71
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BLAST of mRNA_P-wetherbeei_contig14291.1.1 vs. uniprot
Match: A0A0W8DKH9_PHYNI (Platelet-activating factor acetylhydrolase IB subunit alpha n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DKH9_PHYNI)

HSP 1 Score: 109 bits (272), Expect = 1.020e-28
Identity = 53/67 (79.10%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:   10 IKSGKVVVLLAGRYAGRKAVVVKSFDDGAADRKFGHAMVAGIDRYPRKVTKAMSKDKVKKRSKVKPF 210
            +K+GKVVVLL GR+AGRKA+VVK+FD+G  DRKFGHA+VAGIDRYPRKVT+AM K+K+KKRSKVKPF
Sbjct:   32 VKNGKVVVLLNGRFAGRKAIVVKTFDEGKGDRKFGHAIVAGIDRYPRKVTRAMGKNKLKKRSKVKPF 98
[Close]
BLAST of mRNA_P-wetherbeei_contig14291.1.1 vs. uniprot
Match: A0A024GB05_9STRA (Uncharacterized protein n=3 Tax=Albugo TaxID=65356 RepID=A0A024GB05_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.080e-28
Identity = 52/70 (74.29%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    1 MGIIKSGKVVVLLAGRYAGRKAVVVKSFDDGAADRKFGHAMVAGIDRYPRKVTKAMSKDKVKKRSKVKPF 210
            MGIIK+GKVVVLL GR+AGRKA+VVK+FD+G  DRK+G A+VAGIDRYPRKVT++M K+K+KK+SK+KPF
Sbjct:   31 MGIIKNGKVVVLLNGRFAGRKAIVVKAFDEGVGDRKYGFAIVAGIDRYPRKVTRSMGKNKIKKKSKIKPF 100
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14291.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLL5_ECTSI4.430e-3384.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
M4B173_HYAAE7.130e-3180.00Uncharacterized protein n=21 Tax=Oomycota TaxID=47... [more]
A0A7S4SWS4_9DINO9.830e-3180.0060S ribosomal protein L27 (Fragment) n=1 Tax=Alexa... [more]
A0A836CBN1_9STRA1.920e-3080.0060S ribosomal protein L27 n=1 Tax=Tribonema minus ... [more]
A0A0N7L408_PLAHL5.340e-3078.5760s ribosomal protein l27 n=2 Tax=Sar TaxID=269873... [more]
A0A067BL31_SAPPC5.810e-3077.14Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A2D4BF17_PYTIN1.170e-2977.1460S ribosomal protein L27 n=3 Tax=Eukaryota TaxID=... [more]
A0A8J5DSJ1_9DIPT2.590e-2976.4760S ribosomal protein L27 n=3 Tax=Sciaroidea TaxID... [more]
A0A0W8DKH9_PHYNI1.020e-2879.10Platelet-activating factor acetylhydrolase IB subu... [more]
A0A024GB05_9STRA1.080e-2874.29Uncharacterized protein n=3 Tax=Albugo TaxID=65356... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14291contigP-wetherbeei_contig14291:3..212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLL5
Preferred nameRPL27
PFAMsKOW,Ribosomal_L27e
Model size210
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K02901,ko:K05288
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,ko03010,map00563,map01100,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0014070,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030684,GO:0030687,GO:0030867,GO:0031090,GO:0031960,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034101,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042221,GO:0042254,GO:0042592,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048545,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051385,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097305,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901654,GO:1901700,GO:1904044,GO:1990904
Exons1
Evalue7.26e-34
EggNOG OGsCOG2163@1|root,KOG3418@2759|Eukaryota
Descriptionstructural constituent of ribosome
Cds size210
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186016.4597778-CDS-P-wetherbeei_contig14291:2..2121683186016.4597778-CDS-P-wetherbeei_contig14291:2..212Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14291 3..212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14291.1.1prot_P-wetherbeei_contig14291.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14291 3..212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14291.1.1

>prot_P-wetherbeei_contig14291.1.1 ID=prot_P-wetherbeei_contig14291.1.1|Name=mRNA_P-wetherbeei_contig14291.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=70bp
MGIIKSGKVVVLLAGRYAGRKAVVVKSFDDGAADRKFGHAMVAGIDRYPR
KVTKAMSKDKVKKRSKVKPF
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mRNA from alignment at P-wetherbeei_contig14291:3..212-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14291.1.1 ID=mRNA_P-wetherbeei_contig14291.1.1|Name=mRNA_P-wetherbeei_contig14291.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig14291:3..212- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCATCATCAAGTCGGGTAAGGTAGTGGTGTTGCTCGCCGGCAGATA
TGCGGGGAGAAAGGCCGTCGTGGTGAAGTCTTTCGACGACGGCGCCGCCG
ACCGCAAATTTGGTCACGCCATGGTGGCCGGGATCGACCGGTATCCGCGG
AAGGTCACGAAGGCGATGAGCAAGGACAAGGTAAAGAAGCGATCAAAGGT
CAAGCCCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14291:3..212-

>mRNA_P-wetherbeei_contig14291.1.1 ID=mRNA_P-wetherbeei_contig14291.1.1|Name=mRNA_P-wetherbeei_contig14291.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig14291:3..212- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCATCATCAAGTCGGGTAAGGTAGTGGTGTTGCTCGCCGGCAGATA
TGCGGGGAGAAAGGCCGTCGTGGTGAAGTCTTTCGACGACGGCGCCGCCG
ACCGCAAATTTGGTCACGCCATGGTGGCCGGGATCGACCGGTATCCGCGG
AAGGTCACGAAGGCGATGAGCAAGGACAAGGTAAAGAAGCGATCAAAGGT
CAAGCCCTTC
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