mRNA_P-wetherbeei_contig1425.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1425.4.1
Unique NamemRNA_P-wetherbeei_contig1425.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1425.4.1 vs. uniprot
Match: D8LAY6_ECTSI (Nephroretinin 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY6_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 1.800e-54
Identity = 80/118 (67.80%), Postives = 98/118 (83.05%), Query Frame = 1 
Query:   22 ELDLTTTHNDMLFWYTRFEDPNCIAVVELVGATYDDRNGIETGRFGCGWTFIQFFGPSEPGAVEHRDVYRGSPRNLLFFEQADWSSVGDTAIPGCSIWFSLQVWDRLLEARHLMQVDE 375
            E+++ T H ++L+WYT FEDPNCIAVVELV    D  NG++ G++GCGWTFIQFFGP+EP AV+HRDVY GSPRNLLFFEQ DW SVG+T IPGCS+WF+L VW+ LL+ARHL + DE
Sbjct:  183 EMEVATRHEELLYWYTGFEDPNCIAVVELVATVMDTENGVQEGQYGCGWTFIQFFGPNEPEAVQHRDVYHGSPRNLLFFEQGDWGSVGETVIPGCSLWFTLSVWEGLLKARHLFRPDE 300
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BLAST of mRNA_P-wetherbeei_contig1425.4.1 vs. uniprot
Match: A0A835YU49_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU49_9STRA)

HSP 1 Score: 160 bits (406), Expect = 2.740e-43
Identity = 67/118 (56.78%), Postives = 94/118 (79.66%), Query Frame = 1 
Query:   22 ELDLTTTHNDMLFWYTRFEDPNCIAVVELVGATYDDRNGIETGRFGCGWTFIQFFGPSEPGAVEHRDVYRGSPRNLLFFEQADWSSVGDTAIPGCSIWFSLQVWDRLLEARHLMQVDE 375
            ELDLTT H+D+ +WY+ +EDPNC+AVVELV    D R GI+ G++GCGWTF+Q +GP++P +   RDVYRG+PR+LLFFE AD+  VG++A+PGC++ + LQ +D+LL ARHL + +E
Sbjct:  372 ELDLTTHHSDVAYWYSAYEDPNCLAVVELVATEVDARRGIQLGQYGCGWTFLQMYGPTDPESQTQRDVYRGTPRSLLFFEAADFQRVGESAVPGCTLSYRLQTFDKLLAARHLFRENE 489
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1425.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAY6_ECTSI1.800e-5467.80Nephroretinin 4 n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A835YU49_9STRA2.740e-4356.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1425contigP-wetherbeei_contig1425:2880..4202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LAY6
PFAMsEF-hand_1,EF-hand_5,EF-hand_7,EF-hand_8
Model size377
Max annot lvl2759|Eukaryota
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005432,GO:0005488,GO:0005509,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006816,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015081,GO:0015085,GO:0015291,GO:0015297,GO:0015298,GO:0015318,GO:0015368,GO:0015491,GO:0015672,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0034220,GO:0035725,GO:0042592,GO:0043167,GO:0043169,GO:0046872,GO:0046873,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055074,GO:0055080,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0072507,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099516
Exons4
Evalue2.95e-55
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota
Ec32 ortholog descriptionNephrocystin
Ec32 orthologEc-27_005960.1
DescriptionCalcium-binding protein
Cds size375
COG categoryDTZ
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186015.0096264-CDS-P-wetherbeei_contig1425:2879..29261683186015.0096264-CDS-P-wetherbeei_contig1425:2879..2926Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1425 2880..2926 +
1683186015.0215843-CDS-P-wetherbeei_contig1425:3236..33911683186015.0215843-CDS-P-wetherbeei_contig1425:3236..3391Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1425 3237..3391 +
1683186015.030107-CDS-P-wetherbeei_contig1425:3748..38731683186015.030107-CDS-P-wetherbeei_contig1425:3748..3873Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1425 3749..3873 +
1683186015.0386214-CDS-P-wetherbeei_contig1425:4154..42021683186015.0386214-CDS-P-wetherbeei_contig1425:4154..4202Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1425 4155..4202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1425.4.1prot_P-wetherbeei_contig1425.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1425 2880..4202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1425.4.1

>prot_P-wetherbeei_contig1425.4.1 ID=prot_P-wetherbeei_contig1425.4.1|Name=mRNA_P-wetherbeei_contig1425.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
EGEEEVEELDLTTTHNDMLFWYTRFEDPNCIAVVELVGATYDDRNGIETG
RFGCGWTFIQFFGPSEPGAVEHRDVYRGSPRNLLFFEQADWSSVGDTAIP
GCSIWFSLQVWDRLLEARHLMQVDE
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mRNA from alignment at P-wetherbeei_contig1425:2880..4202+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1425.4.1 ID=mRNA_P-wetherbeei_contig1425.4.1|Name=mRNA_P-wetherbeei_contig1425.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1323bp|location=Sequence derived from alignment at P-wetherbeei_contig1425:2880..4202+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGGGGAGGAAGAGGTGGAGGAGCTCGATCTCACCACCACACACAAGTA
AGCCATGCGGTTACGGCGAGAACGGTTTTCTTTTTCTACTTTTCTCTAAT
ACCATTTGCGTTAGTAGGGCCTTGTTTAGCTGTGATTGCGATCAAGGCCA
TGGGAACGGCTGCGCAGGGAAGCTTCCCAGAAACATAGCGAGTTTCCTGT
CTTCTACTCCCTTCTACCATGAGGATACTGGGCGGAAACTATAACTGCAC
ACTCCGTCGCGCCGGCGGCTTCGCTCGCCGAGCCCTCTTTCCGCGCACCT
GCCCGTCTCACTGCAATTCTCTCTTTTCTTTTCTTTTACCGGGCCCCAAA
CTCTCAGCGACATGCTGTTCTGGTACACGCGCTTCGAAGACCCGAATTGC
ATCGCCGTGGTGGAGCTGGTGGGAGCGACGTACGACGACCGCAACGGAAT
CGAAACCGGCCGCTTCGGATGCGGCTGGACCTTCATACAGTTCTTCGGAC
CTAGCGAGCCCGGTGAGTGGAGGCTTAAACAGTTGTTGTCTTCGTTCGCC
TTACGGCTAGGGCCCCAGTGGTAGCATCGGCCCGCCGCTTGAGATTTGCT
TGCCTGTCTTGCCATTTGCAGAGTGATCCCGTGAGCTAGCTGGCGGCATT
CCCTGCCCGAGGCGGCAAACTGCCGCGTTGCGTCATTATTCGTCATGCTA
TTGGATCTCTTGTGTACGCTATGGAAAGGAAATGGTGAACTACATCCAAT
GCTGCCGTGGGTCGAATGGATGAAGTGGAAAGGACGGAGACTTGCGACTG
GCATTCGATCCAATATGTATTGAACGCCGAGCGCTTTATGTTTTCTCTAT
CTTTCCTCCTCTGTTGCAGGTGCGGTAGAGCACCGCGATGTGTACCGCGG
GTCGCCGCGAAACCTACTCTTCTTCGAGCAGGCGGACTGGAGTAGCGTCG
GTGACACTGCCATCCCCGGCTGCAGCATCTGGTTCTCCCTTCAGGTGCGT
GTGTCTCACCCTCGGACGAGCAGGCAGAGGAGAGAAAAGGGTCCAGGGGC
GGACGCTTGACACTACGCGGCCAGATATGGAAGGCGTAGGAGATTGCTGT
GCATGGAATGCCTTTTATTCTTCCCCGGACGTAGCTCGAAAATACGAGCA
GTCTCCGCGTGCGGTTGTGGCGACTATATGCCCATTCCTCTCTGGTGGCG
TCTTCTTCCTTTGTACGCCTGCGTCCCAGCTCCGCCTTTCCTACCTTAAC
ATTCCTCGCGTGCAAAATGGTCCAGGTTTGGGACCGGCTGCTGGAGGCGC
GGCACCTCATGCAGGTGGACGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1425:2880..4202+

>mRNA_P-wetherbeei_contig1425.4.1 ID=mRNA_P-wetherbeei_contig1425.4.1|Name=mRNA_P-wetherbeei_contig1425.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig1425:2880..4202+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGGGGAGGAAGAGGTGGAGGAGCTCGATCTCACCACCACACACAACGA
CATGCTGTTCTGGTACACGCGCTTCGAAGACCCGAATTGCATCGCCGTGG
TGGAGCTGGTGGGAGCGACGTACGACGACCGCAACGGAATCGAAACCGGC
CGCTTCGGATGCGGCTGGACCTTCATACAGTTCTTCGGACCTAGCGAGCC
CGGTGCGGTAGAGCACCGCGATGTGTACCGCGGGTCGCCGCGAAACCTAC
TCTTCTTCGAGCAGGCGGACTGGAGTAGCGTCGGTGACACTGCCATCCCC
GGCTGCAGCATCTGGTTCTCCCTTCAGGTTTGGGACCGGCTGCTGGAGGC
GCGGCACCTCATGCAGGTGGACGAG
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