mRNA_P-wetherbeei_contig14201.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14201.2.1
Unique NamemRNA_P-wetherbeei_contig14201.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14201.2.1 vs. uniprot
Match: A0A1F4BHU9_9PROT (Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_19 TaxID=1797491 RepID=A0A1F4BHU9_9PROT)

HSP 1 Score: 269 bits (688), Expect = 1.840e-90
Identity = 128/161 (79.50%), Postives = 150/161 (93.17%), Query Frame = 1 
Query:    1 LKKPSHSETPATQFLKKAGVAFTEHFYEYVEKGGTAVSADALGVPEHAVVKTLMMEDEARAPLVVLMHGDRKVSTKNLARQAGRKRIEPCQPEVAQRHSGYQVGGTSPFGTRKKLPVYMERSILGLDKIWINGGRRGFLVCVAPAEIVRTLAPTLVEVALE 483
            +K+PSH+ETPATQFL++ GVA+TEHFY+YVE+GGTAVSA +LGVPEHAVVKTL+MED+AR PLVVLMHGDR+VSTKNLARQAG KR+EP  PE AQRHSGYQVGGTSPFGTRK+LPVY+ERSIL L +I+INGGRRGFL+C+AP +IVRTL+P LV+VALE
Sbjct:    1 MKRPSHTETPATQFLREQGVAYTEHFYDYVERGGTAVSAQSLGVPEHAVVKTLVMEDDARRPLVVLMHGDRQVSTKNLARQAGCKRVEPAPPERAQRHSGYQVGGTSPFGTRKRLPVYLERSILELPRIYINGGRRGFLLCIAPGDIVRTLSPQLVDVALE 161
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BLAST of mRNA_P-wetherbeei_contig14201.2.1 vs. uniprot
Match: A0A521VNY1_9PROT (Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521VNY1_9PROT)

HSP 1 Score: 259 bits (661), Expect = 2.240e-86
Identity = 127/162 (78.40%), Postives = 144/162 (88.89%), Query Frame = 1 
Query:    1 LKKPSHSETPATQFLKKAGVAFTEHFYEYVEKGGTAVSADALGVPEHAVVKTLMMEDEARAPLVVLMHGDRKVSTKNLARQAGRKRIEPCQPEVAQRHSGYQVGGTSPFGTRKKLPVYMERSILGLDKIWINGGRRGFLVCVAPAEIVRTLAPTLVEVALED 486
            +K+PSHSETPATQFL+  GVA++EHFY+YVE GGTAVSA ALGV EHAVVKTL+MEDE R PLVVLMHGDRKVST+NLARQAG KRIEP  PE AQRHSGYQVGGTSPFGTRK++PVY+ERSIL L +I+INGGRRGFLV + P EIVRTLAP LV+VA+ +
Sbjct:    1 MKRPSHSETPATQFLRAHGVAYSEHFYDYVEHGGTAVSAQALGVDEHAVVKTLVMEDEQRKPLVVLMHGDRKVSTRNLARQAGCKRIEPAPPEHAQRHSGYQVGGTSPFGTRKRMPVYLERSILELPRIYINGGRRGFLVGIEPGEIVRTLAPCLVDVAIAE 162
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BLAST of mRNA_P-wetherbeei_contig14201.2.1 vs. uniprot
Match: A0A1F3YNG6_9PROT (Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YNG6_9PROT)

HSP 1 Score: 252 bits (644), Expect = 7.610e-84
Identity = 125/156 (80.13%), Postives = 136/156 (87.18%), Query Frame = 1 
Query:   19 SETPATQFLKKAGVAFTEHFYEYVEKGGTAVSADALGVPEHAVVKTLMMEDEARAPLVVLMHGDRKVSTKNLARQAGRKRIEPCQPEVAQRHSGYQVGGTSPFGTRKKLPVYMERSILGLDKIWINGGRRGFLVCVAPAEIVRTLAPTLVEVALED 486
            ++TPAT FLK   V +TEH YEYVE GGT VS+D+LGVPEH VVKTL+MEDE   PL+VLMHGDRKVSTKNLARQAGRKRI PC+PE AQRHSGYQVGGTSPFGTRKKLPVYMERSIL L KI+INGGRRGFLV +AP EIVRTLAP LVEVAL +
Sbjct:    2 ADTPATTFLKAHAVGYTEHHYEYVEHGGTGVSSDSLGVPEHDVVKTLVMEDEDAKPLIVLMHGDRKVSTKNLARQAGRKRIAPCRPEAAQRHSGYQVGGTSPFGTRKKLPVYMERSILDLPKIYINGGRRGFLVGMAPGEIVRTLAPRLVEVALAE 157
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BLAST of mRNA_P-wetherbeei_contig14201.2.1 vs. uniprot
Match: UPI0019C37CFC (Cys-tRNA(Pro) deacylase n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019C37CFC)

HSP 1 Score: 240 bits (612), Expect = 5.710e-79
Identity = 116/154 (75.32%), Postives = 133/154 (86.36%), Query Frame = 1 
Query:   19 SETPATQFLKKAGVAFTEHFYEYVEKGGTAVSADALGVPEHAVVKTLMMEDEARAPLVVLMHGDRKVSTKNLARQAGRKRIEPCQPEVAQRHSGYQVGGTSPFGTRKKLPVYMERSILGLDKIWINGGRRGFLVCVAPAEIVRTLAPTLVEVAL 480
            ++TPAT FLKK  V +TEH Y YVE+GGT VSA +LGVPEH VVKTL+M+DE   PL+VLMHGD+ VSTKNLARQAGRKRIEPC+PEVAQRHSGYQVGGTSPFGT+KK+PVYMER+IL L KI+INGGRRGFLVC++P EI RTL P L + AL
Sbjct:    4 ADTPATVFLKKNEVPYTEHEYRYVERGGTEVSAASLGVPEHHVVKTLVMQDENAKPLIVLMHGDKTVSTKNLARQAGRKRIEPCRPEVAQRHSGYQVGGTSPFGTKKKMPVYMERTILELQKIYINGGRRGFLVCISPQEIERTLQPQLTDAAL 157
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BLAST of mRNA_P-wetherbeei_contig14201.2.1 vs. uniprot
Match: A0A1M3NFE3_9DELT (Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Myxococcales bacterium 68-20 TaxID=1895795 RepID=A0A1M3NFE3_9DELT)

HSP 1 Score: 240 bits (612), Expect = 6.750e-79
Identity = 116/162 (71.60%), Postives = 137/162 (84.57%), Query Frame = 1 
Query:    1 LKKPSH-SETPATQFLKKAGVAFTEHFYEYVEKGGTAVSADALGVPEHAVVKTLMMEDEARAPLVVLMHGDRKVSTKNLARQAGRKRIEPCQPEVAQRHSGYQVGGTSPFGTRKKLPVYMERSILGLDKIWINGGRRGFLVCVAPAEIVRTLAPTLVEVALE 483
            + K SH SETPAT FLKK  VAFTEH YEY E+GGT VS++ LGVPEHAV+KTL+MED+ + PLVVLMHGDR+VSTKNLARQ G+KR+EPC P+VAQRHSGYQVGGTSPFG RK +P+Y+E+S+L L++IWINGGRRGFLV + P E+VR    T VEVALE
Sbjct:    1 MAKASHVSETPATAFLKKNAVAFTEHPYEYEERGGTRVSSEKLGVPEHAVIKTLVMEDDEKKPLVVLMHGDREVSTKNLARQIGKKRVEPCSPDVAQRHSGYQVGGTSPFGLRKPMPIYVEKSVLELERIWINGGRRGFLVGIDPKELVRVSKATAVEVALE 162
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BLAST of mRNA_P-wetherbeei_contig14201.2.1 vs. uniprot
Match: A0A1F4EUB8_9PROT (Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4EUB8_9PROT)

HSP 1 Score: 235 bits (600), Expect = 3.590e-77
Identity = 114/154 (74.03%), Postives = 133/154 (86.36%), Query Frame = 1 
Query:   22 ETPATQFLKKAGVAFTEHFYEYVEKGGTAVSADALGVPEHAVVKTLMMEDEARAPLVVLMHGDRKVSTKNLARQAGRKRIEPCQPEVAQRHSGYQVGGTSPFGTRKKLPVYMERSILGLDKIWINGGRRGFLVCVAPAEIVRTLAPTLVEVALE 483
            +TPAT++L K GV +TEH YEYVE+GGT VS+++LGVPEH VVKTL+M+DE   PL+VLMHGDRKVSTKNLARQAGRK IEPC+PEVAQRH+GYQVGGTSPFGTRK L VYMERSI GL  I+INGGRRGFLV V  A+++  L PTLV+VAL+
Sbjct:    2 KTPATEYLAKLGVGYTEHEYEYVERGGTRVSSESLGVPEHEVVKTLVMQDEQAKPLIVLMHGDRKVSTKNLARQAGRKSIEPCKPEVAQRHTGYQVGGTSPFGTRKPLAVYMERSIAGLPAIYINGGRRGFLVRVKTADLLSVLKPTLVDVALD 155
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BLAST of mRNA_P-wetherbeei_contig14201.2.1 vs. uniprot
Match: A0A1P8FHF7_9PROT (Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Betaproteobacteria bacterium GR16-43 TaxID=1904640 RepID=A0A1P8FHF7_9PROT)

HSP 1 Score: 235 bits (599), Expect = 5.640e-77
Identity = 117/154 (75.97%), Postives = 132/154 (85.71%), Query Frame = 1 
Query:   25 TPATQFLKKAGVAFTEHFYEYVEKGGTAVSADALGVPEHAVVKTLMMEDEARAPLVVLMHGDRKVSTKNLARQAGRKRIEPCQPEVAQRHSGYQVGGTSPFGTRKKLPVYMERSILGLDKIWINGGRRGFLVCVAPAEIVRTLAPTLVEVALED 486
            TPAT FL K GVA+TEHFYEYVE GGT VS+ ALGVPEH VVKTL+ME +   PLVVLMHGDRKVSTK LAR AG KRI PC+PEVAQRHSGY VGGTSPFGTRK +PVY+ERS+L L +I+INGGRRG+L+ +A AEIVRTL+PTLVEVAL +
Sbjct:    6 TPATAFLAKEGVAYTEHFYEYVEHGGTTVSSSALGVPEHEVVKTLVMETDKGDPLVVLMHGDRKVSTKELARVAGVKRIFPCKPEVAQRHSGYLVGGTSPFGTRKAMPVYLERSVLDLPRIYINGGRRGYLLGMASAEIVRTLSPTLVEVALAE 159
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BLAST of mRNA_P-wetherbeei_contig14201.2.1 vs. uniprot
Match: A0A5E4ZZ78_9BURK (Aminoacyl-tRNA deacylase n=2 Tax=Pandoraea captiosa TaxID=2508302 RepID=A0A5E4ZZ78_9BURK)

HSP 1 Score: 236 bits (603), Expect = 9.220e-77
Identity = 116/162 (71.60%), Postives = 138/162 (85.19%), Query Frame = 1 
Query:    1 LKKPSHSETPATQFLKKAGVAFTEHFYEYVEKGGTAVSADALGVPEHAVVKTLMMEDEARAPLVVLMHGDRKVSTKNLARQAGRKRIEPCQPEVAQRHSGYQVGGTSPFGTRKKLPVYMERSILGLDKIWINGGRRGFLVCVAPAEIVRTLAPTLVEVALED 486
            +K  + +ETPAT+ L++A VAF  HFYEY E GGT VS++AL VPEH V+KTL+MEDE   PL+VLMHGDR+VSTK+LARQAGRKRIEPC+PEVA RHSG+ VGGTSPFGTRK++P+YME SIL L +I+INGGRRG+LV +APAEIVR LAPTLV VAL D
Sbjct:   55 MKSKATAETPATKQLREAKVAFRNHFYEYQEHGGTRVSSEALQVPEHEVIKTLVMEDEDGNPLIVLMHGDRQVSTKSLARQAGRKRIEPCKPEVANRHSGFLVGGTSPFGTRKRMPIYMEASILELPEIYINGGRRGYLVSMAPAEIVRVLAPTLVNVALAD 216
[Close]
BLAST of mRNA_P-wetherbeei_contig14201.2.1 vs. uniprot
Match: A0A0H3WPQ6_9BURK (Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=5 Tax=Pandoraea TaxID=93217 RepID=A0A0H3WPQ6_9BURK)

HSP 1 Score: 234 bits (597), Expect = 1.260e-76
Identity = 114/162 (70.37%), Postives = 136/162 (83.95%), Query Frame = 1 
Query:    1 LKKPSHSETPATQFLKKAGVAFTEHFYEYVEKGGTAVSADALGVPEHAVVKTLMMEDEARAPLVVLMHGDRKVSTKNLARQAGRKRIEPCQPEVAQRHSGYQVGGTSPFGTRKKLPVYMERSILGLDKIWINGGRRGFLVCVAPAEIVRTLAPTLVEVALED 486
            +K  + +ETPAT+ L+ A VAF  HFYEY E GGT VS+ AL VPEH V+KTL+MEDE   PL+VLMHGDR+VSTK+LARQAGRKRIEPC+P+VA RHSG+ VGGTSPFGTRK++P+YME SIL L +I+INGGRRG+LV +APAE+VR LAPTLV VAL D
Sbjct:    1 MKPKATAETPATKQLRDAKVAFRNHFYEYQEHGGTRVSSQALQVPEHVVIKTLVMEDEDANPLIVLMHGDRQVSTKSLARQAGRKRIEPCKPDVANRHSGFLVGGTSPFGTRKRMPIYMEASILELPEIYINGGRRGYLVSIAPAELVRVLAPTLVNVALAD 162
[Close]
BLAST of mRNA_P-wetherbeei_contig14201.2.1 vs. uniprot
Match: A0A7C4E6G0_9PROT (Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C4E6G0_9PROT)

HSP 1 Score: 233 bits (595), Expect = 2.620e-76
Identity = 114/156 (73.08%), Postives = 130/156 (83.33%), Query Frame = 1 
Query:   19 SETPATQFLKKAGVAFTEHFYEYVEKGGTAVSADALGVPEHAVVKTLMMEDEARAPLVVLMHGDRKVSTKNLARQAGRKRIEPCQPEVAQRHSGYQVGGTSPFGTRKKLPVYMERSILGLDKIWINGGRRGFLVCVAPAEIVRTLAPTLVEVALED 486
            SETPATQ+LK+ G+AFTEH YEYVE GGTA S+ ALGVPEH VVKTL+MEDE   PL+VLMHGDR+VSTKNLARQ GRKRIEPC PEVAQRH+GYQVGGTSPFGTRK LPV++ERS+L L +I INGGRRG+LV + PA +   L  T V+ AL D
Sbjct:    8 SETPATQWLKRRGIAFTEHVYEYVEHGGTAESSRALGVPEHEVVKTLVMEDETAKPLIVLMHGDRRVSTKNLARQIGRKRIEPCAPEVAQRHTGYQVGGTSPFGTRKALPVFVERSVLALPRILINGGRRGYLVGIDPAVLTTALGATAVDCALLD 163
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14201.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4BHU9_9PROT1.840e-9079.50Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Beta... [more]
A0A521VNY1_9PROT2.240e-8678.40Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=3 Tax=Beta... [more]
A0A1F3YNG6_9PROT7.610e-8480.13Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Beta... [more]
UPI0019C37CFC5.710e-7975.32Cys-tRNA(Pro) deacylase n=1 Tax=Candidatus Parcuba... [more]
A0A1M3NFE3_9DELT6.750e-7971.60Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Myxo... [more]
A0A1F4EUB8_9PROT3.590e-7774.03Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Beta... [more]
A0A1P8FHF7_9PROT5.640e-7775.97Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Beta... [more]
A0A5E4ZZ78_9BURK9.220e-7771.60Aminoacyl-tRNA deacylase n=2 Tax=Pandoraea captios... [more]
A0A0H3WPQ6_9BURK1.260e-7670.37Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=5 Tax=Pand... [more]
A0A7C4E6G0_9PROT2.620e-7673.08Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=2 Tax=Beta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14201contigP-wetherbeei_contig14201:1160..1648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog62928.azo3220
PFAMstRNA_edit
Model size489
Max annot lvl206389|Rhodocyclales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.94e-73
EggNOG OGsCOG2606@1|root,COG2606@2|Bacteria,1RGX5@1224|Proteobacteria,2VQAY@28216|Betaproteobacteria,2KW2N@206389|Rhodocyclales
DescriptionBelongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
Cds size489
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186013.0040727-CDS-P-wetherbeei_contig14201:1159..16481683186013.0040727-CDS-P-wetherbeei_contig14201:1159..1648Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14201 1160..1648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14201.2.1prot_P-wetherbeei_contig14201.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14201 1160..1648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14201.2.1

>prot_P-wetherbeei_contig14201.2.1 ID=prot_P-wetherbeei_contig14201.2.1|Name=mRNA_P-wetherbeei_contig14201.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
LKKPSHSETPATQFLKKAGVAFTEHFYEYVEKGGTAVSADALGVPEHAVV
KTLMMEDEARAPLVVLMHGDRKVSTKNLARQAGRKRIEPCQPEVAQRHSG
YQVGGTSPFGTRKKLPVYMERSILGLDKIWINGGRRGFLVCVAPAEIVRT
LAPTLVEVALED*
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mRNA from alignment at P-wetherbeei_contig14201:1160..1648+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14201.2.1 ID=mRNA_P-wetherbeei_contig14201.2.1|Name=mRNA_P-wetherbeei_contig14201.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig14201:1160..1648+ (Phaeothamnion wetherbeei SAG_119_79)
TTGAAGAAGCCCAGCCACAGCGAGACTCCCGCAACGCAGTTCCTGAAGAA
GGCGGGCGTCGCCTTTACCGAGCACTTCTACGAATACGTCGAAAAGGGCG
GCACGGCGGTGTCGGCGGATGCCCTAGGGGTGCCGGAGCATGCGGTCGTG
AAGACGCTGATGATGGAGGACGAGGCACGCGCGCCGCTGGTGGTGCTGAT
GCACGGCGACCGCAAGGTATCTACCAAGAACCTCGCGCGCCAGGCCGGTC
GCAAGCGCATCGAGCCCTGCCAGCCGGAAGTCGCCCAGCGCCACTCGGGC
TACCAGGTTGGGGGTACCTCCCCGTTCGGCACGAGGAAGAAGCTGCCGGT
CTACATGGAGCGCTCGATCCTCGGGCTGGATAAAATCTGGATCAACGGCG
GGCGGCGCGGGTTCCTCGTCTGCGTCGCACCGGCCGAAATCGTCCGGACG
CTGGCGCCGACCCTGGTCGAGGTGGCGCTGGAGGACTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14201:1160..1648+

>mRNA_P-wetherbeei_contig14201.2.1 ID=mRNA_P-wetherbeei_contig14201.2.1|Name=mRNA_P-wetherbeei_contig14201.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig14201:1160..1648+ (Phaeothamnion wetherbeei SAG_119_79)
TTGAAGAAGCCCAGCCACAGCGAGACTCCCGCAACGCAGTTCCTGAAGAA
GGCGGGCGTCGCCTTTACCGAGCACTTCTACGAATACGTCGAAAAGGGCG
GCACGGCGGTGTCGGCGGATGCCCTAGGGGTGCCGGAGCATGCGGTCGTG
AAGACGCTGATGATGGAGGACGAGGCACGCGCGCCGCTGGTGGTGCTGAT
GCACGGCGACCGCAAGGTATCTACCAAGAACCTCGCGCGCCAGGCCGGTC
GCAAGCGCATCGAGCCCTGCCAGCCGGAAGTCGCCCAGCGCCACTCGGGC
TACCAGGTTGGGGGTACCTCCCCGTTCGGCACGAGGAAGAAGCTGCCGGT
CTACATGGAGCGCTCGATCCTCGGGCTGGATAAAATCTGGATCAACGGCG
GGCGGCGCGGGTTCCTCGTCTGCGTCGCACCGGCCGAAATCGTCCGGACG
CTGGCGCCGACCCTGGTCGAGGTGGCGCTGGAGGACTAG
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