mRNA_P-wetherbeei_contig14113.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14113.1.1
Unique NamemRNA_P-wetherbeei_contig14113.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14113.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14113contigP-wetherbeei_contig14113:979..1743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size639
Hectar predicted targeting categoryother localisation
Exons2
Cds size624
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186009.666927-CDS-P-wetherbeei_contig14113:978..13711683186009.666927-CDS-P-wetherbeei_contig14113:978..1371Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14113 979..1371 -
1683186009.6768854-CDS-P-wetherbeei_contig14113:1497..17281683186009.6768854-CDS-P-wetherbeei_contig14113:1497..1728Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14113 1498..1728 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186009.6855361-UTR-P-wetherbeei_contig14113:1728..17431683186009.6855361-UTR-P-wetherbeei_contig14113:1728..1743Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14113 1729..1743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14113.1.1prot_P-wetherbeei_contig14113.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14113 979..1728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14113.1.1

>prot_P-wetherbeei_contig14113.1.1 ID=prot_P-wetherbeei_contig14113.1.1|Name=mRNA_P-wetherbeei_contig14113.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=208bp
MELSLAIFRKILPVGHPNVATATSNLGFQYQLAGRYEDAEKFYKAALDMR
ERAEFPNFEHIAESLNNLAQIYKRQWRIAEAEPILHRAVAILVKRQPADH
PELAGTRNKLAQNLYKQSKFAEAEPLFRQALAAWRKPQNAGNTELSATLS
DLASNLVQQNKLDEAEALFDEALVLTKAVLPPSHPSIARVHMGLSDVHVL
RGDSRSAL
back to top

mRNA from alignment at P-wetherbeei_contig14113:979..1743-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14113.1.1 ID=mRNA_P-wetherbeei_contig14113.1.1|Name=mRNA_P-wetherbeei_contig14113.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig14113:979..1743- (Phaeothamnion wetherbeei SAG_119_79)
GAAGCCGAACCGCTGATGGAGCTCTCGCTCGCGATCTTCCGCAAGATCCT
GCCGGTCGGCCATCCCAACGTCGCCACCGCTACCAGCAATCTCGGCTTCC
AATACCAGCTCGCCGGCCGCTACGAGGATGCGGAAAAGTTCTACAAGGCT
GCGCTCGACATGCGCGAGCGCGCGGAGTTCCCGAACTTCGAGCACATCGC
CGAAAGCCTCAACAATCTCGCGCAGATCTATAAGCGGCAGTGGCGCGTGA
CCGAATCGATACCGCTGCTCAAGCGCGCGGTGGAAATGCGCGAGCGGCTG
CATGGACCAGACGACCGGCAGGTTGCGCTCGGGCTCACCAATCTTGCCGC
CGCGTACGAAATGCAGATGCAGATCGCGGAGGCCGAGCCGATCCTGCATC
GCGCCGTCGCGATCCTCGTGAAACGGCAGCCGGCAGATCATCCAGAGCTC
GCCGGCACCCGCAACAAGCTGGCGCAGAACCTCTACAAGCAAAGCAAGTT
CGCCGAGGCCGAGCCGTTGTTCCGGCAGGCGCTGGCAGCATGGCGCAAGC
CGCAAAATGCCGGGAATACGGAGCTTTCCGCGACACTCTCCGATCTCGCC
AGCAATCTCGTTCAGCAAAACAAGCTCGACGAGGCCGAGGCGCTGTTCGA
CGAGGCACTGGTGCTGACCAAGGCCGTTCTGCCGCCGTCGCATCCGAGCA
TCGCGCGCGTGCACATGGGGCTTTCCGATGTGCATGTGCTGCGCGGCGAC
AGCCGGTCGGCACTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14113:979..1743-

>mRNA_P-wetherbeei_contig14113.1.1 ID=mRNA_P-wetherbeei_contig14113.1.1|Name=mRNA_P-wetherbeei_contig14113.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=624bp|location=Sequence derived from alignment at P-wetherbeei_contig14113:979..1743- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCTCTCGCTCGCGATCTTCCGCAAGATCCTGCCGGTCGGCCATCC
CAACGTCGCCACCGCTACCAGCAATCTCGGCTTCCAATACCAGCTCGCCG
GCCGCTACGAGGATGCGGAAAAGTTCTACAAGGCTGCGCTCGACATGCGC
GAGCGCGCGGAGTTCCCGAACTTCGAGCACATCGCCGAAAGCCTCAACAA
TCTCGCGCAGATCTATAAGCGGCAGTGGCGCATCGCGGAGGCCGAGCCGA
TCCTGCATCGCGCCGTCGCGATCCTCGTGAAACGGCAGCCGGCAGATCAT
CCAGAGCTCGCCGGCACCCGCAACAAGCTGGCGCAGAACCTCTACAAGCA
AAGCAAGTTCGCCGAGGCCGAGCCGTTGTTCCGGCAGGCGCTGGCAGCAT
GGCGCAAGCCGCAAAATGCCGGGAATACGGAGCTTTCCGCGACACTCTCC
GATCTCGCCAGCAATCTCGTTCAGCAAAACAAGCTCGACGAGGCCGAGGC
GCTGTTCGACGAGGCACTGGTGCTGACCAAGGCCGTTCTGCCGCCGTCGC
ATCCGAGCATCGCGCGCGTGCACATGGGGCTTTCCGATGTGCATGTGCTG
CGCGGCGACAGCCGGTCGGCACTC
back to top