mRNA_P-wetherbeei_contig14110.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14110.2.1
Unique NamemRNA_P-wetherbeei_contig14110.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14110.2.1 vs. uniprot
Match: Q2GST7_CHAGB (Uncharacterized protein n=1 Tax=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) TaxID=306901 RepID=Q2GST7_CHAGB)

HSP 1 Score: 112 bits (281), Expect = 2.320e-30
Identity = 51/82 (62.20%), Postives = 69/82 (84.15%), Query Frame = 1 
Query:   31 NMVATCDVGFPIRLEGIASKHMKVTSYEPELFPGLIYRMSEPKLVLLIFVSGKVVITGSKSLADVHEAYEVIYPHLVQEKKI 276
            N+V +CD+ FPIRLEG+ASKH   +SYEPELFPGLIYRM +PK+VLLIFVSGK+V+TG+K   ++++A+E+IYP L   +K+
Sbjct:    3 NIVGSCDIKFPIRLEGLASKHHNFSSYEPELFPGLIYRMIKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFRKV 84
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BLAST of mRNA_P-wetherbeei_contig14110.2.1 vs. uniprot
Match: A0A384JX14_BOTFB (Bcspt15 n=18 Tax=Sclerotiniaceae TaxID=28983 RepID=A0A384JX14_BOTFB)

HSP 1 Score: 117 bits (294), Expect = 2.340e-30
Identity = 53/83 (63.86%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:   28 QNMVATCDVGFPIRLEGIASKHMKVTSYEPELFPGLIYRMSEPKLVLLIFVSGKVVITGSKSLADVHEAYEVIYPHLVQEKKI 276
            QN+V +CD+ FPIRLEG+AS+HM  +SYEPELFPGLIYRM +PK+VLLIFVSGK+V+TG+K   ++++A+E+IYP L   KK+
Sbjct:  169 QNIVGSCDIKFPIRLEGLASRHMNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFKKV 251
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BLAST of mRNA_P-wetherbeei_contig14110.2.1 vs. uniprot
Match: D8TP00_VOLCA (TATA-box binding protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TP00_VOLCA)

HSP 1 Score: 119 bits (299), Expect = 2.560e-30
Identity = 58/92 (63.04%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:   28 QNMVATCDVGFPIRLEGIASKHMKVTSYEPELFPGLIYRMSEPKLVLLIFVSGKVVITGSKSLADVHEAYEVIYPHLVQEKKIATSLPAVPS 303
            QN+V +CDV FPIRLEG+A  H    SYEPELFPGLIYRM +PK+VLLIFVSGKVV+TG+K+  ++++AY  IYP L+Q KK   +LPA+P+
Sbjct:  103 QNIVGSCDVKFPIRLEGLAYAHSLFASYEPELFPGLIYRMKQPKIVLLIFVSGKVVLTGAKTRYEIYQAYMNIYPTLIQYKKGDAALPALPA 194
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BLAST of mRNA_P-wetherbeei_contig14110.2.1 vs. uniprot
Match: Q5S251_VOLCA (TATA-box binding protein n=3 Tax=Volvox TaxID=3066 RepID=Q5S251_VOLCA)

HSP 1 Score: 119 bits (299), Expect = 2.660e-30
Identity = 58/92 (63.04%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:   28 QNMVATCDVGFPIRLEGIASKHMKVTSYEPELFPGLIYRMSEPKLVLLIFVSGKVVITGSKSLADVHEAYEVIYPHLVQEKKIATSLPAVPS 303
            QN+V +CDV FPIRLEG+A  H    SYEPELFPGLIYRM +PK+VLLIFVSGKVV+TG+K+  ++++AY  IYP L+Q KK   +LPA+P+
Sbjct:  128 QNIVGSCDVKFPIRLEGLAYAHSLFASYEPELFPGLIYRMKQPKIVLLIFVSGKVVLTGAKTRYEIYQAYMNIYPTLIQYKKGDAALPALPA 219
[Close]
BLAST of mRNA_P-wetherbeei_contig14110.2.1 vs. uniprot
Match: A0A150H1H2_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H1H2_GONPE)

HSP 1 Score: 118 bits (296), Expect = 3.720e-30
Identity = 58/92 (63.04%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:   28 QNMVATCDVGFPIRLEGIASKHMKVTSYEPELFPGLIYRMSEPKLVLLIFVSGKVVITGSKSLADVHEAYEVIYPHLVQEKKIATSLPAVPS 303
            QN+V +CDV FPIRLEG+A  H    SYEPELFPGLIYRM +PK+VLLIFVSGKVV+TG+K+  ++++AY  IYP L+Q KK    +PA+PS
Sbjct:  111 QNIVGSCDVKFPIRLEGLAFAHSLFASYEPELFPGLIYRMKQPKIVLLIFVSGKVVLTGAKTRYEIYQAYMNIYPTLIQYKKGDAVVPALPS 202
[Close]
BLAST of mRNA_P-wetherbeei_contig14110.2.1 vs. uniprot
Match: A0A1D9QIC8_SCLS1 (Uncharacterized protein n=3 Tax=Sclerotiniaceae TaxID=28983 RepID=A0A1D9QIC8_SCLS1)

HSP 1 Score: 117 bits (294), Expect = 7.210e-30
Identity = 53/83 (63.86%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:   28 QNMVATCDVGFPIRLEGIASKHMKVTSYEPELFPGLIYRMSEPKLVLLIFVSGKVVITGSKSLADVHEAYEVIYPHLVQEKKI 276
            QN+V +CD+ FPIRLEG+AS+HM  +SYEPELFPGLIYRM +PK+VLLIFVSGK+V+TG+K   ++++A+E+IYP L   KK+
Sbjct:  221 QNIVGSCDIKFPIRLEGLASRHMNFSSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQAFEMIYPVLQDFKKV 303
[Close]
BLAST of mRNA_P-wetherbeei_contig14110.2.1 vs. uniprot
Match: I0YM67_COCSC (TBP-domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YM67_COCSC)

HSP 1 Score: 116 bits (290), Expect = 8.080e-30
Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:   28 QNMVATCDVGFPIRLEGIASKHMKVTSYEPELFPGLIYRMSEPKLVLLIFVSGKVVITGSKSLADVHEAYEVIYPHLVQEKK--IATSLPAVPSPADAMA 321
            QN+V +CDV FPIRLEG+   H   +SYEPELFPGLIYRM EPK+VLLIFVSGKVV+TG K   D++EA+E IYP L + +K     S PA+PS A A A
Sbjct:  121 QNIVGSCDVKFPIRLEGLNYSHGMFSSYEPELFPGLIYRMKEPKVVLLIFVSGKVVLTGGKKREDIYEAFESIYPVLQEFRKGEAVPSAPALPSTAPARA 220
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BLAST of mRNA_P-wetherbeei_contig14110.2.1 vs. uniprot
Match: A0A1D2AC59_AUXPR (Uncharacterized protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AC59_AUXPR)

HSP 1 Score: 115 bits (289), Expect = 8.170e-30
Identity = 59/94 (62.77%), Postives = 74/94 (78.72%), Query Frame = 1 
Query:   28 QNMVATCDVGFPIRLEGIASKHMKVTSYEPELFPGLIYRMSEPKLVLLIFVSGKVVITGSKSLADVHEAYEVIYPHLVQEKK--IATSLPAVPS 303
            QNMV +CDV FPIRLEG+AS H    SYEPELFPGLIYRM +PK+VLLIFVSGKVV+TG+K   ++++A+E IYP L + KK  +  S+PA P+
Sbjct:  117 QNMVGSCDVRFPIRLEGLASSHSVFCSYEPELFPGLIYRMVDPKIVLLIFVSGKVVLTGAKRREEIYQAFENIYPVLKEFKKGGLLESVPAPPA 210
[Close]
BLAST of mRNA_P-wetherbeei_contig14110.2.1 vs. uniprot
Match: A0A059LCR3_9CHLO (Transcription factor TFIID n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LCR3_9CHLO)

HSP 1 Score: 113 bits (283), Expect = 9.180e-30
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:   28 QNMVATCDVGFPIRLEGIASKHMKVTSYEPELFPGLIYRMSEPKLVLLIFVSGKVVITGSKSLADVHEAYEVIYPHLVQEKK---IATSLPAVPSP 306
            QNMV +CDV FPIRLEG+AS H    SYEPELFPGLIYRM +PK+VLLIFVSGKVV+TG+K   +++ A+E IYP L + KK   +A  L + P+P
Sbjct:   34 QNMVGSCDVRFPIRLEGLASTHSVFCSYEPELFPGLIYRMVDPKIVLLIFVSGKVVLTGAKRRDEIYRAFENIYPVLKEFKKGGILAAPLTSSPTP 129
[Close]
BLAST of mRNA_P-wetherbeei_contig14110.2.1 vs. uniprot
Match: A0A6B2LKN4_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LKN4_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 1.210e-29
Identity = 53/82 (64.63%), Postives = 68/82 (82.93%), Query Frame = 1 
Query:   28 QNMVATCDVGFPIRLEGIASKHMKVTSYEPELFPGLIYRMSEPKLVLLIFVSGKVVITGSKSLADVHEAYEVIYPHLVQEKK 273
            QN+VA+CDV FP+RLEG+A  H   +SYEPELFPGLIYRM +PK+VLLIFVSGK+V+TG+K + ++ EA+E IYP L + KK
Sbjct:   83 QNIVASCDVRFPVRLEGLACTHDSFSSYEPELFPGLIYRMVDPKVVLLIFVSGKIVLTGAKEVDEIFEAFEAIYPVLEEFKK 164
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14110.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q2GST7_CHAGB2.320e-3062.20Uncharacterized protein n=1 Tax=Chaetomium globosu... [more]
A0A384JX14_BOTFB2.340e-3063.86Bcspt15 n=18 Tax=Sclerotiniaceae TaxID=28983 RepID... [more]
D8TP00_VOLCA2.560e-3063.04TATA-box binding protein n=1 Tax=Volvox carteri f.... [more]
Q5S251_VOLCA2.660e-3063.04TATA-box binding protein n=3 Tax=Volvox TaxID=3066... [more]
A0A150H1H2_GONPE3.720e-3063.04Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A1D9QIC8_SCLS17.210e-3063.86Uncharacterized protein n=3 Tax=Sclerotiniaceae Ta... [more]
I0YM67_COCSC8.080e-3062.00TBP-domain-containing protein n=1 Tax=Coccomyxa su... [more]
A0A1D2AC59_AUXPR8.170e-3062.77Uncharacterized protein n=3 Tax=Auxenochlorella pr... [more]
A0A059LCR3_9CHLO9.180e-3061.46Transcription factor TFIID n=1 Tax=Helicosporidium... [more]
A0A6B2LKN4_9EUKA1.210e-2964.63Uncharacterized protein n=1 Tax=Arcella intermedia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14110contigP-wetherbeei_contig14110:1250..1600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3067.XP_002948268.1
PFAMsTBP
Model size351
Max annot lvl3041|Chlorophyta
KEGG koko:K03120
KEGG Pathwayko03022,ko05016,ko05165,ko05166,ko05168,ko05169,ko05203,map03022,map05016,map05165,map05166,map05168,map05169,map05203
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.2e-31
EggNOG OGsCOG2101@1|root,KOG3302@2759|Eukaryota,37Q87@33090|Viridiplantae,34GRE@3041|Chlorophyta
Ec32 ortholog descriptionBeta2-adaptin/TBP, C-terminal domain
Ec32 orthologEc-14_000120.1
Descriptionprotein with similarity to the TATA-binding protein of Saccharomyces cerevisiae SPT15, a general transcription factor that interacts with other factors to form the preinitiation complex at promoters. ChromDB ID
Cds size351
COG categoryK
BRITEko00000,ko00001,ko03000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186009.5466523-CDS-P-wetherbeei_contig14110:1249..16001683186009.5466523-CDS-P-wetherbeei_contig14110:1249..1600Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14110 1250..1600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14110.2.1prot_P-wetherbeei_contig14110.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14110 1250..1600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14110.2.1

>prot_P-wetherbeei_contig14110.2.1 ID=prot_P-wetherbeei_contig14110.2.1|Name=mRNA_P-wetherbeei_contig14110.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
FASRQHRGRQNMVATCDVGFPIRLEGIASKHMKVTSYEPELFPGLIYRMS
EPKLVLLIFVSGKVVITGSKSLADVHEAYEVIYPHLVQEKKIATSLPAVP
SPADAMAGAATAEAETE
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mRNA from alignment at P-wetherbeei_contig14110:1250..1600-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14110.2.1 ID=mRNA_P-wetherbeei_contig14110.2.1|Name=mRNA_P-wetherbeei_contig14110.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig14110:1250..1600- (Phaeothamnion wetherbeei SAG_119_79)
TTTGCCTCTCGTCAACACCGTGGCCGGCAGAACATGGTGGCGACGTGCGA
CGTCGGCTTCCCGATCCGCCTGGAGGGCATCGCCAGCAAGCACATGAAGG
TGACTTCGTACGAACCAGAGCTCTTCCCGGGCCTCATCTACCGGATGAGT
GAGCCCAAGCTCGTCCTGCTCATCTTCGTTAGCGGCAAGGTGGTCATCAC
GGGTTCCAAATCGCTCGCCGACGTCCATGAGGCCTACGAGGTCATTTACC
CCCACCTTGTGCAGGAAAAGAAGATCGCCACGTCCCTGCCCGCAGTTCCG
TCGCCGGCGGACGCCATGGCAGGGGCTGCGACGGCTGAGGCGGAGACGGA
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14110:1250..1600-

>mRNA_P-wetherbeei_contig14110.2.1 ID=mRNA_P-wetherbeei_contig14110.2.1|Name=mRNA_P-wetherbeei_contig14110.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig14110:1250..1600- (Phaeothamnion wetherbeei SAG_119_79)
TTTGCCTCTCGTCAACACCGTGGCCGGCAGAACATGGTGGCGACGTGCGA
CGTCGGCTTCCCGATCCGCCTGGAGGGCATCGCCAGCAAGCACATGAAGG
TGACTTCGTACGAACCAGAGCTCTTCCCGGGCCTCATCTACCGGATGAGT
GAGCCCAAGCTCGTCCTGCTCATCTTCGTTAGCGGCAAGGTGGTCATCAC
GGGTTCCAAATCGCTCGCCGACGTCCATGAGGCCTACGAGGTCATTTACC
CCCACCTTGTGCAGGAAAAGAAGATCGCCACGTCCCTGCCCGCAGTTCCG
TCGCCGGCGGACGCCATGGCAGGGGCTGCGACGGCTGAGGCGGAGACGGA
G
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