mRNA_P-wetherbeei_contig14100.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14100.2.1
Unique NamemRNA_P-wetherbeei_contig14100.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14100.2.1 vs. uniprot
Match: A0A7X1P4K9_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1P4K9_9PROT)

HSP 1 Score: 167 bits (422), Expect = 1.120e-51
Identity = 83/106 (78.30%), Postives = 95/106 (89.62%), Query Frame = 1
Query:   10 MSKKSKLTTKYLNELIEQATTDAYNESEQAGGFFALIEENLTLPFVPHVLGQQVTVAKVDITKRDQIVAICVRGKATQTIPILDLPLPDPQPKGAE*IDAYMRWHG 327
            M K S+  TKYL++LIE+ATTDAY+ESEQAGGFFA+IEENL LPFV  V+GQ+VTVAKVDITKRDQIVAIC RGKATQ IPILDLP+PDP+P+GAE IDAY RW+G
Sbjct:    1 MRKTSQFGTKYLDKLIEEATTDAYDESEQAGGFFAMIEENLALPFVTQVVGQEVTVAKVDITKRDQIVAICSRGKATQAIPILDLPMPDPRPEGAEWIDAYRRWYG 106          
BLAST of mRNA_P-wetherbeei_contig14100.2.1 vs. uniprot
Match: A0A401K0W9_9PROT (Uncharacterized protein n=2 Tax=Sulfuriferula multivorans TaxID=1559896 RepID=A0A401K0W9_9PROT)

HSP 1 Score: 159 bits (403), Expect = 9.690e-49
Identity = 79/104 (75.96%), Postives = 91/104 (87.50%), Query Frame = 1
Query:   16 KKSKLTTKYLNELIEQATTDAYNESEQAGGFFALIEENLTLPFVPHVLGQQVTVAKVDITKRDQIVAICVRGKATQTIPILDLPLPDPQPKGAE*IDAYMRWHG 327
            K +K T +YL++LIE+ATTDAY+ESEQAGGFFA+IEENL+LPF+  VLGQ VTV KVDITKRDQIVAICV GK+TQ IPILDLP+PDP P+GAE IDAY RW G
Sbjct:    6 KTAKFTAEYLDKLIEEATTDAYDESEQAGGFFAMIEENLSLPFMTRVLGQAVTVGKVDITKRDQIVAICVHGKSTQAIPILDLPMPDPPPEGAEWIDAYRRWCG 109          
BLAST of mRNA_P-wetherbeei_contig14100.2.1 vs. uniprot
Match: A0A1F4EAD3_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_67_28 TaxID=1797503 RepID=A0A1F4EAD3_9PROT)

HSP 1 Score: 155 bits (391), Expect = 5.950e-47
Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = 1
Query:   10 MSKKSKLTTKYLNELIEQATTDAYNESEQAGGFFALIEENLTLPFVPHVLGQQVTVAKVDITKRDQIVAICVRGKATQTIPILDLPLPDPQPKGAE*IDAYMRWHG 327
            M KKS+ + KYL+ LIE+AT DAYNESEQAGGFFALIEE+L +PF   VLGQ+VTVAKVD+T RDQIVAIC  GK  Q I +LDLP+PDP P+GAE IDAY RWHG
Sbjct:    1 MRKKSRYSAKYLDRLIEEATVDAYNESEQAGGFFALIEEHLAMPFATRVLGQEVTVAKVDMTNRDQIVAICSHGKVKQAISVLDLPMPDPPPEGAEWIDAYRRWHG 106          
BLAST of mRNA_P-wetherbeei_contig14100.2.1 vs. uniprot
Match: A0A1G3HL30_9RHOO (Uncharacterized protein n=1 Tax=Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24 TaxID=1802018 RepID=A0A1G3HL30_9RHOO)

HSP 1 Score: 135 bits (340), Expect = 3.500e-39
Identity = 66/106 (62.26%), Postives = 82/106 (77.36%), Query Frame = 1
Query:   10 MSKKSKLTTKYLNELIEQATTDAYNESEQAGGFFALIEENLTLPFVPHVLGQQVTVAKVDITKRDQIVAICVRGKATQTIPILDLPLPDPQPKGAE*IDAYMRWHG 327
            M K  + +T+YL++LI +ATTDAYNESEQA GFF +IEENL +PFV  VLGQ V V  +DIT RD+IVA+C R K  Q+IPILDLP+P+  P GAE I+AY RW+G
Sbjct:    1 MEKAPRFSTEYLDQLIAEATTDAYNESEQAVGFFTMIEENLAVPFVTQVLGQDVNVVSIDITVRDEIVALCTRDKKKQSIPILDLPMPNSLPSGAEWIEAYRRWYG 106          
BLAST of mRNA_P-wetherbeei_contig14100.2.1 vs. uniprot
Match: A0A8I1N420_9PROT (Uncharacterized protein n=1 Tax=Thiobacillus sp. TaxID=924 RepID=A0A8I1N420_9PROT)

HSP 1 Score: 131 bits (330), Expect = 1.350e-37
Identity = 69/97 (71.13%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   37 KYLNELIEQATTDAYNESEQAGGFFALIEENLTLPFVPHVLGQQVTVAKVDITKRDQIVAICVRGKATQTIPILDLPLPDPQPKGAE*IDAYMRWHG 327
            KYL++L E ATTDAY+ESEQA GFFA+IEENL+L F  HVLG  VTVA+VDIT  D IVAIC  GK+TQ IPILDLPL  P P GAE IDAY RW G
Sbjct:   15 KYLDKLTEAATTDAYSESEQAWGFFAMIEENLSLLFTTHVLGHAVTVAQVDITGCDHIVAICTYGKSTQAIPILDLPLSVPPPGGAEWIDAYRRWCG 111          
BLAST of mRNA_P-wetherbeei_contig14100.2.1 vs. uniprot
Match: A0A1T2KT94_9GAMM (Uncharacterized protein n=1 Tax=Solemya velesiana gill symbiont TaxID=1918948 RepID=A0A1T2KT94_9GAMM)

HSP 1 Score: 126 bits (317), Expect = 1.050e-35
Identity = 64/101 (63.37%), Postives = 75/101 (74.26%), Query Frame = 1
Query:   25 KLTTKYLNELIEQATTDAYNESEQAGGFFALIEENLTLPFVPHVLGQQVTVAKVDITKRDQIVAICVRGKATQTIPILDLPLPDPQPKGAE*IDAYMRWHG 327
            K T KYL++LIE ATTDAY ESEQ  GFF+LIE+NL +PF   VLGQ VTV  +DIT+ DQIVAIC  GK  Q IP+LDLP+  P P+GAE + AY RW G
Sbjct:    4 KFTAKYLDKLIEAATTDAYIESEQVSGFFSLIEDNLVVPFKTRVLGQLVTVTGIDITESDQIVAICTFGKTAQAIPVLDLPMSAPFPEGAEWVAAYRRWCG 104          
BLAST of mRNA_P-wetherbeei_contig14100.2.1 vs. uniprot
Match: A0A2N6GE75_9GAMM (Uncharacterized protein n=1 Tax=Sedimenticola sp. TaxID=1940285 RepID=A0A2N6GE75_9GAMM)

HSP 1 Score: 119 bits (298), Expect = 1.000e-32
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 1
Query:   31 TTKYLNELIEQATTDAYNESEQAGGFFALIEENLTLPFVPHVLGQQVTVAKVDITKRDQIVAICVRGKATQTIPILDLPLPDPQPKGAE*IDAYMRWHG 327
            T K L++LIE ATTDAYNESEQ  GF  LI++NL +PF   VLGQ V V  VD+T+ DQIVAIC+ G   Q IP+LDLP+P P  +GAE I AY RW G
Sbjct:   13 TVKCLDKLIEAATTDAYNESEQVSGFLTLIDDNLAVPFTTFVLGQTVIVTGVDLTESDQIVAICMLGNTAQAIPVLDLPMPTPLTEGAEWIAAYRRWCG 111          
BLAST of mRNA_P-wetherbeei_contig14100.2.1 vs. uniprot
Match: A0A6N7GCF5_9ACTN (Uncharacterized protein n=1 Tax=Micromonosporaceae bacterium TaxID=1873464 RepID=A0A6N7GCF5_9ACTN)

HSP 1 Score: 116 bits (290), Expect = 1.270e-31
Identity = 59/100 (59.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:   22 SKLTTKYLNELIEQATTDAYNESEQAGGFFALIEENLTLPFVPHVLGQQVTVAKVDITKRDQIVAICVRGKATQTIPILDLPLPDPQPKGAE*IDAYMRW 321
            S ++T  L+ELIEQAT D YNE EQ  G F +++ENL++PF   VLG  VTV  +D+T   QIVAICVRG A Q IPIL+LPLP P P G E I+AY RW
Sbjct:    2 SPVSTARLDELIEQATVDCYNEDEQLTGLFTMVQENLSMPFDTTVLGVDVTVEDIDLTGTGQIVAICVRGAARQAIPILELPLPTPPPVGVEWIEAYRRW 101          
BLAST of mRNA_P-wetherbeei_contig14100.2.1 vs. uniprot
Match: A0A2V9LDX7_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9LDX7_9BACT)

HSP 1 Score: 112 bits (281), Expect = 2.490e-30
Identity = 54/93 (58.06%), Postives = 71/93 (76.34%), Query Frame = 1
Query:   43 LNELIEQATTDAYNESEQAGGFFALIEENLTLPFVPHVLGQQVTVAKVDITKRDQIVAICVRGKATQTIPILDLPLPDPQPKGAE*IDAYMRW 321
            ++E+IE+AT DAY+ESEQ  GF+ ++EE+L +PF   VLG +VTV +VD+T  D+IV I  R K+ Q IPI DLPLPDP P+G+E IDAY RW
Sbjct:    1 MDEVIEEATVDAYSESEQTTGFYTMLEEHLGVPFKTEVLGVEVTVERVDMTDDDRIVTISERNKSRQRIPIADLPLPDPPPEGSEWIDAYRRW 93          
BLAST of mRNA_P-wetherbeei_contig14100.2.1 vs. uniprot
Match: A0A1F9DGR9_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium RBG_16_48_10 TaxID=1797839 RepID=A0A1F9DGR9_9DELT)

HSP 1 Score: 112 bits (280), Expect = 3.230e-30
Identity = 50/90 (55.56%), Postives = 66/90 (73.33%), Query Frame = 1
Query:   52 LIEQATTDAYNESEQAGGFFALIEENLTLPFVPHVLGQQVTVAKVDITKRDQIVAICVRGKATQTIPILDLPLPDPQPKGAE*IDAYMRW 321
            +I +AT D YNESE+  G F ++EENL  PF   +LG +VTV +VD+ K D+IVA+C RG+    +P++DLPLP+P PKGAE IDAY RW
Sbjct:    1 MIAEATVDCYNESEEITGIFTMLEENLAFPFTTTLLGVEVTVERVDLNKADEIVAVCRRGREKLRVPVIDLPLPEPNPKGAEWIDAYRRW 90          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14100.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X1P4K9_9PROT1.120e-5178.30Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A401K0W9_9PROT9.690e-4975.96Uncharacterized protein n=2 Tax=Sulfuriferula mult... [more]
A0A1F4EAD3_9PROT5.950e-4771.70Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1G3HL30_9RHOO3.500e-3962.26Uncharacterized protein n=1 Tax=Rhodocyclales bact... [more]
A0A8I1N420_9PROT1.350e-3771.13Uncharacterized protein n=1 Tax=Thiobacillus sp. T... [more]
A0A1T2KT94_9GAMM1.050e-3563.37Uncharacterized protein n=1 Tax=Solemya velesiana ... [more]
A0A2N6GE75_9GAMM1.000e-3260.61Uncharacterized protein n=1 Tax=Sedimenticola sp. ... [more]
A0A6N7GCF5_9ACTN1.270e-3159.00Uncharacterized protein n=1 Tax=Micromonosporaceae... [more]
A0A2V9LDX7_9BACT2.490e-3058.06Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A1F9DGR9_9DELT3.230e-3055.56Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14100contigP-wetherbeei_contig14100:1289..1615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog543728.Vapar_2294
PFAMsCalci_bind_CcbP
Model size327
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.91e-25
EggNOG OGs2DMB2@1|root,32UGJ@2|Bacteria
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186009.1901581-UTR-P-wetherbeei_contig14100:1288..12971683186009.1901581-UTR-P-wetherbeei_contig14100:1288..1297Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14100 1289..1297 +
1683186009.2055166-UTR-P-wetherbeei_contig14100:1588..16151683186009.2055166-UTR-P-wetherbeei_contig14100:1588..1615Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14100 1589..1615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186009.198201-CDS-P-wetherbeei_contig14100:1297..15881683186009.198201-CDS-P-wetherbeei_contig14100:1297..1588Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14100 1298..1588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14100.2.1prot_P-wetherbeei_contig14100.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14100 1298..1588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14100.2.1

>prot_P-wetherbeei_contig14100.2.1 ID=prot_P-wetherbeei_contig14100.2.1|Name=mRNA_P-wetherbeei_contig14100.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
MSKKSKLTTKYLNELIEQATTDAYNESEQAGGFFALIEENLTLPFVPHVL
GQQVTVAKVDITKRDQIVAICVRGKATQTIPILDLPLPDPQPKGAE*
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mRNA from alignment at P-wetherbeei_contig14100:1289..1615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14100.2.1 ID=mRNA_P-wetherbeei_contig14100.2.1|Name=mRNA_P-wetherbeei_contig14100.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig14100:1289..1615+ (Phaeothamnion wetherbeei SAG_119_79)
GAAACAAGCATGAGCAAGAAATCGAAGCTCACCACGAAATATTTGAATGA GCTGATCGAACAGGCGACGACAGATGCCTATAACGAATCAGAGCAGGCGG GCGGGTTCTTTGCATTGATCGAAGAGAACCTTACTCTTCCGTTCGTGCCC CACGTGCTTGGCCAACAAGTGACGGTCGCAAAGGTCGATATCACCAAGCG CGATCAGATCGTCGCCATATGCGTGCGTGGAAAGGCGACTCAAACAATTC CGATCCTTGATCTGCCGTTGCCCGACCCGCAGCCGAAGGGGGCAGAATAG ATCGATGCCTATATGCGCTGGCATGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14100:1289..1615+

>mRNA_P-wetherbeei_contig14100.2.1 ID=mRNA_P-wetherbeei_contig14100.2.1|Name=mRNA_P-wetherbeei_contig14100.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig14100:1289..1615+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAAGAAATCGAAGCTCACCACGAAATATTTGAATGAGCTGATCGA
ACAGGCGACGACAGATGCCTATAACGAATCAGAGCAGGCGGGCGGGTTCT
TTGCATTGATCGAAGAGAACCTTACTCTTCCGTTCGTGCCCCACGTGCTT
GGCCAACAAGTGACGGTCGCAAAGGTCGATATCACCAAGCGCGATCAGAT
CGTCGCCATATGCGTGCGTGGAAAGGCGACTCAAACAATTCCGATCCTTG
ATCTGCCGTTGCCCGACCCGCAGCCGAAGGGGGCAGAATAG
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