mRNA_P-wetherbeei_contig14094.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14094.1.1
Unique NamemRNA_P-wetherbeei_contig14094.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14094.1.1 vs. uniprot
Match: A0A521M8E2_9HYPH (Protein TonB n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521M8E2_9HYPH)

HSP 1 Score: 192 bits (489), Expect = 4.040e-58
Identity = 141/227 (62.11%), Postives = 158/227 (69.60%), Query Frame = 1
Query:   52 VSLGLHGLAVVAALMAFGPMQLATDDAAAITIYVEPDAAPVATPXXXXXXXXXTVAMPDYAPS---PPEELPLPDFSVPLPPPKQAQSA-----PPRPVXXXXXXXXXXXXXXXXXXXERASPAPAASXXXXXXXXXXXXGWNALLAAWLAANRRYPEDARRRSEEGEVTVRFTVAHDGRVAEAAVVTGSGFAALDAAALRLLQGSTLPAPGIEATRTVRIRFRLGD 708
            +S  LHG+AV AALMAFG  +LA DD+AAIT+Y+EP AAPVAT        XX       A +   PP+E  LPDF+ P               PP+P  XXXXXXXXXXXXXXXXX    S    ++            GWNALLAAWLAANRRYP++ARRRSEEGEV+VRFTV  DGRV+EAAVV GSGFAALDAAALRLLQG+TLPAPGIEATRTVRIRFRLGD
Sbjct:    1 MSFSLHGVAVAAALMAFGSQRLALDDSAAITVYIEPHAAPVATASESRPAVXXXXXXXXXATAALDPPKEPALPDFAPPXXXXXXXXXXXXXXXPPKPAQXXXXXXXXXXXXXXXXXTVLQSAPAQSAPVSANAPATVVPGWNALLAAWLAANRRYPDEARRRSEEGEVSVRFTVTSDGRVSEAAVVKGSGFAALDAAALRLLQGATLPAPGIEATRTVRIRFRLGD 227          
BLAST of mRNA_P-wetherbeei_contig14094.1.1 vs. uniprot
Match: A0A1F3A3B0_9PROT (TonB_C domain-containing protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 TaxID=1797225 RepID=A0A1F3A3B0_9PROT)

HSP 1 Score: 194 bits (493), Expect = 4.420e-58
Identity = 162/278 (58.27%), Postives = 175/278 (62.95%), Query Frame = 1
Query:    1 LQYNITDGQSDRPIAIAV------------SLGLHGLAVVAALMAFGPMQLATDDAAAITIYVEPDAAPVAT---------PXXXXXXXXXTVAMPDYAPSPPEELPLPDFSVP------------LPPPKQAQSAPP---------RPVXXXXXXXXXXXXXXXXXXXERASPAPAASXXXXXXXXXXXXGWNALLAAWLAANRRYPEDARRRSEEGEVTVRFTVAHDGRVAEAAVVTGSGFAALDAAALRLLQGSTLPAPGIEATRTVRIRFRLGD 708
            L+YNITD Q  RPI IA+            SLGLH + V AALMAFG  +L  DDA AIT++VEPD APVAT         PXXXXXXXXX       A  PP+E  LPDF+ P               PK A  A           R  X  XXXXXXXXXXXXXX     + APAA             GWNALLAAWLAANRRYP++ARRRSEEGEVTVRFTVAHDGRVA+ AVV GSGF ALD AALRLLQG+TLPAPGIEATRTVRIRFRL D
Sbjct:    2 LRYNITDNQLGRPIGIALASGWSLGAAITASLGLHAIVVAAALMAFGSQRLGIDDAVAITVFVEPDRAPVATASEIPPPAAPXXXXXXXXXXXPPAVVALEPPKEPALPDFTPPPXXXXXXXXXXXXXXPKPALXAXXXXXXXXXXKRAAXTVXXXXXXXXXXXXXXELASQARAPAA---VATVPATVAPGWNALLAAWLAANRRYPDEARRRSEEGEVTVRFTVAHDGRVAQVAVVKGSGFTALDDAALRLLQGATLPAPGIEATRTVRIRFRLRD 276          
BLAST of mRNA_P-wetherbeei_contig14094.1.1 vs. uniprot
Match: A0A1Q3V7H4_9PROT (TonB_C domain-containing protein n=1 Tax=Rhodospirillales bacterium 69-11 TaxID=1895825 RepID=A0A1Q3V7H4_9PROT)

HSP 1 Score: 80.1 bits (196), Expect = 6.710e-14
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  448 GWNALLAAWLAANRRYPEDARRRSEEGEVTVRFTVAHDGRVAEAAVVTGSGFAALDAAALRLLQGSTLPA-----PGIEATRTVRIRFRL 702
            GW   LAAWLAA+R YPEDARR  E+G   VRFT+ HDGRV   A+V  SG   LD AA  +L+G ++P      P    T TV IR+ L
Sbjct:  266 GWRGELAAWLAAHRIYPEDARRAGEQGRAVVRFTIDHDGRVLAVALVGSSGADRLDDAAQAMLRGKSVPPLPAAMPQDRLTVTVTIRYAL 355          
BLAST of mRNA_P-wetherbeei_contig14094.1.1 vs. uniprot
Match: A0A1M3PJG0_9PROT (TonB_C domain-containing protein n=1 Tax=Rhodospirillales bacterium 70-18 TaxID=1895826 RepID=A0A1M3PJG0_9PROT)

HSP 1 Score: 73.2 bits (178), Expect = 4.950e-12
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  451 WNALLAAWLAANRRYPEDARRRSEEGEVTVRFTVAHDGRVAEAAVVTGSGFAALDAAALRLLQGSTLPAPGI-----EATRTVRIRFRL 702
            W   LAAW  A++ YPE ARR   +G  T+RF +   GRVAE  +++GSG   LDAAAL LL+G+TLP P       E   TV +R+RL
Sbjct:  135 WRQQLAAWFDAHQTYPEAARRHGVQGVATLRFLLTPRGRVAEVTLLSGSGSDMLDAAALGLLRGATLPPPPAGTPEGERRITVPLRYRL 223          
BLAST of mRNA_P-wetherbeei_contig14094.1.1 vs. uniprot
Match: A0A440ICH2_9HYPH (Protein TonB (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A440ICH2_9HYPH)

HSP 1 Score: 62.8 bits (151), Expect = 9.550e-9
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 1
Query:  451 WNALLAAWLAANRRYPEDARRRSEEGEVTVRFTVAHDGRVAEAAVVTGSGFAALDAAALRLLQGSTLPAPGIE 669
            W + L  WL  + RYP  AR R  +G   V FTVA  G+V    +   SG A LD AAL+ LQG+T+PAP +E
Sbjct:   84 WKSRLYTWLGRHTRYPSAARLRRAKGTANVVFTVAASGQVTSVRLARSSGDADLDRAALKTLQGATVPAPPVE 156          
BLAST of mRNA_P-wetherbeei_contig14094.1.1 vs. uniprot
Match: A0A530BE78_9HYPH (Energy transducer TonB (Fragment) n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A530BE78_9HYPH)

HSP 1 Score: 62.0 bits (149), Expect = 1.240e-8
Identity = 35/77 (45.45%), Postives = 43/77 (55.84%), Query Frame = 1
Query:  451 WNALLAAWLAANRRYPEDARRRSEEGEVTVRFTVAHDGRVAEAAVVTGSGFAALDAAALRLLQGSTLPAPGIEATRT 681
            W + L  WL  + RYP  AR R  +G   V FTVA  G+V    +   SG A LD AAL+ LQG+T+PAP  E   T
Sbjct:   50 WKSRLYTWLGRHTRYPSAARLRRAKGTANVVFTVAASGQVTSVRLARSSGDADLDRAALKTLQGATVPAPPAEKAGT 126          
BLAST of mRNA_P-wetherbeei_contig14094.1.1 vs. uniprot
Match: A0A439LNE2_9HYPH (TonB family protein n=5 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A439LNE2_9HYPH)

HSP 1 Score: 62.0 bits (149), Expect = 1.130e-7
Identity = 35/77 (45.45%), Postives = 43/77 (55.84%), Query Frame = 1
Query:  451 WNALLAAWLAANRRYPEDARRRSEEGEVTVRFTVAHDGRVAEAAVVTGSGFAALDAAALRLLQGSTLPAPGIEATRT 681
            W + L  WL  + RYP  AR R  +G   V FTVA  G+V    +   SG A LD AAL+ LQG+T+PAP  E   T
Sbjct:  232 WKSRLYTWLGRHTRYPSAARLRRAKGTANVVFTVAASGQVTSVRLARSSGDADLDRAALKTLQGATVPAPPAEKAGT 308          
BLAST of mRNA_P-wetherbeei_contig14094.1.1 vs. uniprot
Match: UPI0014214022 (energy transducer TonB n=1 Tax=Parvibaculum indicum TaxID=562969 RepID=UPI0014214022)

HSP 1 Score: 60.5 bits (145), Expect = 2.870e-7
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  451 WNALLAAWLAANRRYPEDARRRSEEGEVTVRFTVAHDGRVAEAAVVTGSGFAALDAAALRLLQ-GSTLPAP--GIEATRTVRIRFRL 702
            W A L A LA  +RYP DAR   E G V +R  +  DG V+ A+V   SG+AALD AA+ L++  S +P P  G+E    V +R+ L
Sbjct:  181 WQARLGAHLARYKRYPSDARANDETGIVYMRMFIERDGAVSAASVYRSSGYAALDRAAMVLVEEASPVPPPPEGMEGDIVVPLRYNL 267          
BLAST of mRNA_P-wetherbeei_contig14094.1.1 vs. uniprot
Match: UPI0018DF7BC9 (energy transducer TonB n=1 Tax=Sphingomonas sp. MA1305 TaxID=2479204 RepID=UPI0018DF7BC9)

HSP 1 Score: 60.1 bits (144), Expect = 3.020e-7
Identity = 41/90 (45.56%), Postives = 50/90 (55.56%), Query Frame = 1
Query:  451 WNALLAAWLAANRRYPEDARRRSEEGEVTVRFTVAHDGRVAEAAVVTGSGFAALDAAALRLLQGSTLPAPGIEATR------TVRIRFRL 702
            W A + A L   RRYPE ARR  ++GEV +RF +  DG V  AA+V GSG AALD AA   L  +  P P I   R      TV I+F +
Sbjct:  149 WEAQIMARLQRVRRYPEAARRAGQQGEVVLRFRLTRDGHVHAAAIVRGSGCAALDRAAEETLARAD-PLPPIPPDRPDAITLTVAIQFAV 237          
BLAST of mRNA_P-wetherbeei_contig14094.1.1 vs. uniprot
Match: A0A514WPX6_9SPHN (TonB_C domain-containing protein n=4 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A514WPX6_9SPHN)

HSP 1 Score: 58.5 bits (140), Expect = 9.400e-7
Identity = 65/218 (29.82%), Postives = 89/218 (40.83%), Query Frame = 1
Query:   19 DGQSDRPIAIAVSLGLHGLAVVAALMAFGPMQLATDDAAAITIYVEPDAAPVATPXXXXXXXXXTVAMPDYAPSPPEELPLPDFSVPLPPPKQAQSAPPRPVXXXXXXXXXXXXXXXXXXXERASPAPAASXXXXXXXXXXXXGWNALLAAWLAANRRYPEDARRRSEEGEVTVRFTVAHDGRVAEAAVVTGSGFAALDAAALRLLQGSTLPAPGIEA 672
            +G S R +A+AV+ G+H  AV  A +AFG +Q    D  A    V  D   V  P           A P   P  P        ++PLP    A   PP                          PAPAA+             +   L A L   RRYP  A R+  +G  ++ F +  +GR+  AA+V+G+G AALD AAL ++  +  P P I A
Sbjct:   19 NGASVRAMALAVTAGVHVAAVAVAALAFGWLQAGGADHPAPPTLVTFD---VHAPDPARRQPRVPAARPRQVPGTPPAA----MALPLPAHTAAPIRPPA----------------------GEQPAPAANGGMADGLPDLALSYRRALMARLEGQRRYPAAALRQQAQGTGSLLFRIDREGRLLGAAIVSGTGHAALDQAALDIVSRAA-PFPPIPA 206          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14094.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A521M8E2_9HYPH4.040e-5862.11Protein TonB n=1 Tax=Reyranella sp. TaxID=1929291 ... [more]
A0A1F3A3B0_9PROT4.420e-5858.27TonB_C domain-containing protein n=1 Tax=Alphaprot... [more]
A0A1Q3V7H4_9PROT6.710e-1451.11TonB_C domain-containing protein n=1 Tax=Rhodospir... [more]
A0A1M3PJG0_9PROT4.950e-1248.31TonB_C domain-containing protein n=1 Tax=Rhodospir... [more]
A0A440ICH2_9HYPH9.550e-946.58Protein TonB (Fragment) n=1 Tax=Mesorhizobium sp. ... [more]
A0A530BE78_9HYPH1.240e-845.45Energy transducer TonB (Fragment) n=1 Tax=Mesorhiz... [more]
A0A439LNE2_9HYPH1.130e-745.45TonB family protein n=5 Tax=unclassified Mesorhizo... [more]
UPI00142140222.870e-743.68energy transducer TonB n=1 Tax=Parvibaculum indicu... [more]
UPI0018DF7BC93.020e-745.56energy transducer TonB n=1 Tax=Sphingomonas sp. MA... [more]
A0A514WPX6_9SPHN9.400e-729.82TonB_C domain-containing protein n=4 Tax=Sphingomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14094contigP-wetherbeei_contig14094:315..1025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1040987.AZUY01000024_gene5550
Preferred nametonB
PFAMsTonB_2,TonB_C
Model size711
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03832
KEGG TC2.C.1.1
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.96e-12
EggNOG OGsCOG0810@1|root,COG0810@2|Bacteria,1MZXC@1224|Proteobacteria,2UCBT@28211|Alphaproteobacteria,43KS7@69277|Phyllobacteriaceae
DescriptionInteracts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
Cds size711
COG categoryM
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186008.5682485-CDS-P-wetherbeei_contig14094:314..10251683186008.5682485-CDS-P-wetherbeei_contig14094:314..1025Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14094 315..1025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14094.1.1prot_P-wetherbeei_contig14094.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14094 315..1025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14094.1.1

>prot_P-wetherbeei_contig14094.1.1 ID=prot_P-wetherbeei_contig14094.1.1|Name=mRNA_P-wetherbeei_contig14094.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=237bp
LQYNITDGQSDRPIAIAVSLGLHGLAVVAALMAFGPMQLATDDAAAITIY
VEPDAAPVATPTPVPEPEPETVAMPDYAPSPPEELPLPDFSVPLPPPKQA
QSAPPRPVPPKPEPKRAAAAAAQPAPAERASPAPAASAPAVVAPAVVAPG
WNALLAAWLAANRRYPEDARRRSEEGEVTVRFTVAHDGRVAEAAVVTGSG
FAALDAAALRLLQGSTLPAPGIEATRTVRIRFRLGD*
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mRNA from alignment at P-wetherbeei_contig14094:315..1025+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14094.1.1 ID=mRNA_P-wetherbeei_contig14094.1.1|Name=mRNA_P-wetherbeei_contig14094.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=711bp|location=Sequence derived from alignment at P-wetherbeei_contig14094:315..1025+ (Phaeothamnion wetherbeei SAG_119_79)
TTACAATATAACATTACAGACGGTCAATCAGACCGGCCGATCGCGATCGC GGTGTCGCTCGGCCTGCATGGGCTTGCGGTGGTGGCGGCCTTGATGGCTT TCGGACCGATGCAACTGGCGACCGACGACGCGGCCGCGATTACGATTTAT GTCGAACCCGATGCGGCGCCGGTCGCCACGCCGACACCTGTGCCTGAACC CGAGCCTGAAACCGTGGCGATGCCTGACTACGCACCGTCGCCGCCAGAGG AATTGCCGCTGCCGGACTTCTCGGTGCCGTTACCGCCGCCAAAGCAAGCG CAATCGGCGCCGCCGCGTCCTGTGCCGCCCAAACCGGAGCCAAAGCGCGC AGCGGCCGCCGCTGCACAGCCGGCACCGGCGGAACGAGCATCGCCAGCGC CGGCTGCGAGCGCACCGGCGGTGGTCGCACCAGCGGTGGTCGCACCAGGA TGGAACGCGCTGCTCGCGGCCTGGCTCGCCGCCAATCGACGCTACCCGGA GGACGCGCGGCGGCGGAGCGAGGAGGGTGAGGTCACTGTCCGGTTCACCG TTGCCCACGATGGCCGGGTCGCGGAAGCGGCCGTGGTGACGGGAAGCGGA TTCGCGGCGCTCGACGCCGCGGCGCTCCGCCTGCTGCAGGGTTCGACGTT GCCGGCGCCCGGGATCGAGGCGACGCGTACGGTGCGCATCCGTTTCCGCC TCGGAGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14094:315..1025+

>mRNA_P-wetherbeei_contig14094.1.1 ID=mRNA_P-wetherbeei_contig14094.1.1|Name=mRNA_P-wetherbeei_contig14094.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=711bp|location=Sequence derived from alignment at P-wetherbeei_contig14094:315..1025+ (Phaeothamnion wetherbeei SAG_119_79)
TTACAATATAACATTACAGACGGTCAATCAGACCGGCCGATCGCGATCGC
GGTGTCGCTCGGCCTGCATGGGCTTGCGGTGGTGGCGGCCTTGATGGCTT
TCGGACCGATGCAACTGGCGACCGACGACGCGGCCGCGATTACGATTTAT
GTCGAACCCGATGCGGCGCCGGTCGCCACGCCGACACCTGTGCCTGAACC
CGAGCCTGAAACCGTGGCGATGCCTGACTACGCACCGTCGCCGCCAGAGG
AATTGCCGCTGCCGGACTTCTCGGTGCCGTTACCGCCGCCAAAGCAAGCG
CAATCGGCGCCGCCGCGTCCTGTGCCGCCCAAACCGGAGCCAAAGCGCGC
AGCGGCCGCCGCTGCACAGCCGGCACCGGCGGAACGAGCATCGCCAGCGC
CGGCTGCGAGCGCACCGGCGGTGGTCGCACCAGCGGTGGTCGCACCAGGA
TGGAACGCGCTGCTCGCGGCCTGGCTCGCCGCCAATCGACGCTACCCGGA
GGACGCGCGGCGGCGGAGCGAGGAGGGTGAGGTCACTGTCCGGTTCACCG
TTGCCCACGATGGCCGGGTCGCGGAAGCGGCCGTGGTGACGGGAAGCGGA
TTCGCGGCGCTCGACGCCGCGGCGCTCCGCCTGCTGCAGGGTTCGACGTT
GCCGGCGCCCGGGATCGAGGCGACGCGTACGGTGCGCATCCGTTTCCGCC
TCGGAGACTGA
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