mRNA_P-wetherbeei_contig1409.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1409.4.1
Unique NamemRNA_P-wetherbeei_contig1409.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1409.4.1 vs. uniprot
Match: A0A6H5L6M0_9PHAE (GDT1 family protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M0_9PHAE)

HSP 1 Score: 321 bits (823), Expect = 5.770e-104
Identity = 186/255 (72.94%), Postives = 215/255 (84.31%), Query Frame = 2
Query:  317 AVAAVAG-VALHLLPHPLVASAATELPVTLPGALADASLADRLTRSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLVAFAGAVGALAVMTVLAVLIGVAFHAVPAALTSTIPFDDYVAVAAFLFFGLNTLKDAYQLPDDSS-GIDNEKEEAEEEVKKVGTEKKASAWALILQTFSLVFAAEFGDRSFLTTIALGAAQNPLSVGFGALAAHASATGIAVAGGALLSQYISEKVVGYIGGSLFIVFALTTAVGIF 1075
            A+ A+AG V+  LLPH  VA  ATE  V +  A  D +L +RLT SGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRL++FAG+VGALAVMTVLAVL+G+AFH+VP+  TS +P DD +A AAFL+FG+NTLKDAY LPDDS+ GI+ E+ EAEE VK++  E K + WALILQTFSLVFAAEFGDRSFLTTIALGAAQNP  V  GA+ AHASATGIAV GGALLSQYISEKV+GYIGG+LF+VFA+TTA+GIF
Sbjct:   94 ALLALAGAVSCQLLPHAAVA--ATETAVPIASAAVDGTLVERLTSSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLISFAGSVGALAVMTVLAVLLGLAFHSVPSVFTSGLPLDDIIAAAAFLYFGINTLKDAYALPDDSNQGIEEERAEAEESVKEL--EGKKTVWALILQTFSLVFAAEFGDRSFLTTIALGAAQNPFGVASGAIVAHASATGIAVTGGALLSQYISEKVIGYIGGALFVVFAVTTAIGIF 344          
BLAST of mRNA_P-wetherbeei_contig1409.4.1 vs. uniprot
Match: A0A836CPU7_9STRA (GDT1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPU7_9STRA)

HSP 1 Score: 272 bits (696), Expect = 1.040e-84
Identity = 174/284 (61.27%), Postives = 204/284 (71.83%), Query Frame = 2
Query:  257 GAGRVPARLPRAIVSICKWGAVAAVAGVALHLLPHPLVASAATELPVTLPGALADASLADRLTRSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLVAFAGAVGALAVMTVLAVLIGVAFHAVPAALTSTIPFDDYVAVAAFLFFGLNTLKDAYQLPDDSSGIDNEKEEAEEEVKKVGTEKKA-----------SAWALILQTFSLVFAAEFGDRSFLTTIALGAAQNPLSVGFGALAAHASATGIAVAGGALLSQYISEKVVGYIGGSLFIVFALTTAVGIF 1075
            G+ R  A L R + +  +   V  VA VAL     P  A+AA      L GA+AD +L +  T +GF QAFSLVFVSEIGDKTFFIA LLAAKTSRL++FAG++ AL+VMTVL+ LIGVAFH+VP+ LT+ IPFDDY+AVAAFL+FGL TL+DA Q+PDD    DN   EAE                       S  ALI QTF LVFAAEFGDRSFLTTIAL AAQNP+SV  GA+AAHASATGIAV GGALLSQYISEK+VGYIGG+LFI+FA+TTA+G+F
Sbjct:   79 GSARSAAALSRRVGA--QLSGVFLVAAVALLSHALPAAAAAAVTAGAPLTGAIADGTLTEA-TSNGFVQAFSLVFVSEIGDKTFFIAGLLAAKTSRLISFAGSIAALSVMTVLSCLIGVAFHSVPSTLTNGIPFDDYIAVAAFLYFGLVTLRDASQIPDD----DNSGMEAEAAXXXXXXXXXXXXXXXXXXGAPSTLALIAQTFGLVFAAEFGDRSFLTTIALSAAQNPISVAGGAIAAHASATGIAVMGGALLSQYISEKLVGYIGGTLFIIFAITTALGLF 355          
BLAST of mRNA_P-wetherbeei_contig1409.4.1 vs. uniprot
Match: W7TMF8_9STRA (GDT1 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMF8_9STRA)

HSP 1 Score: 262 bits (669), Expect = 2.460e-80
Identity = 152/256 (59.38%), Postives = 194/256 (75.78%), Query Frame = 2
Query:  314 GAVAAVAGVALHL-LPHPLVASAATELPVTLPGALADASLADRLTRSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLVAFAGAVGALAVMTVLAVLIGVAFHAVPAALTSTIPFDDYVAVAAFLFFGLNTLKDAYQLPD-DSSGIDNEKEEAEEEVKKVGTEKKASAWALILQTFSLVFAAEFGDRSFLTTIALGAAQNPLSVGFGALAAHASATGIAVAGGALLSQYISEKVVGYIGGSLFIVFALTTAVGIF 1075
            G   A+ G+ L   +P    A++A+   +T   +L+  ++  +L  SGF QAFSLVFVSEIGDKTFFIA LLA KTSRL++F G++ AL+VMT+++VLIG AFHA+P  L     FD +VAVAAF +FGL TLKD+Y + D DSSG+D E+ EAE+ V++    ++ + W  ILQ FSLVFAAEFGDRSFL+TIALGAAQNP SV  GA+ AHA+ATGIAVA GA LS+Y SEK++GYIGG+LFI+FALTTA+GIF
Sbjct:  125 GLAVALTGIVLIAGMPIGAHAASASLADLTAGASLSYNNVVAKLAASGFLQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFTGSMAALSVMTIISVLIGQAFHAIPQGLGGGFKFDQWVAVAAFSYFGLKTLKDSYDMADGDSSGVDEERAEAEKAVQESSAPERRTPWGTILQIFSLVFAAEFGDRSFLSTIALGAAQNPFSVATGAIGAHATATGIAVASGAFLSKYFSEKLIGYIGGTLFIIFALTTALGIF 380          
BLAST of mRNA_P-wetherbeei_contig1409.4.1 vs. uniprot
Match: A0A7S2K988_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K988_9STRA)

HSP 1 Score: 261 bits (666), Expect = 1.360e-79
Identity = 151/223 (67.71%), Postives = 180/223 (80.72%), Query Frame = 2
Query:  413 LADAS-LADRLTRSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLVAFAGAVGALAVMTVLAVLIGVAFHAVPAALTSTIPFDDYVAVAAFLFFGLNTLKDAYQL-PDDSSGIDNEKEEAEEEVKKVGTEKKASAWALILQTFSLVFAAEFGDRSFLTTIALGAAQNPLSVGFGALAAHASATGIAVAGGALLSQYISEKVVGYIGGSLFIVFALTTAVGIF 1075
            +ADAS +  R + SGF+QAFSLVF+SEIGDKTFFIA LLA KTSRLV+F G++GALA MTVL+VLIG  FHAVPA +   IP DD  AV AF FFGL TLK+A  + P+  S +D E EEA+E V+   T K+ +AW  I+ TF+LVFAAEFGDRSFL+TIAL AAQNP SVGFGA+AAH  ATGIAVAGG+ +++YISEKV+GYIGGSLF+VFALTTA+GIF
Sbjct:  181 VADASAMVGRFSESGFYQAFSLVFLSEIGDKTFFIAGLLAMKTSRLVSFIGSMGALAAMTVLSVLIGQIFHAVPAGIAQGIPLDDVAAVLAFTFFGLKTLKEASDMDPEAGSVMDEEFEEAQEAVEGSQTIKEITAWGQIVSTFALVFAAEFGDRSFLSTIALSAAQNPFSVGFGAVAAHGIATGIAVAGGSYVAKYISEKVIGYIGGSLFLVFALTTALGIF 403          
BLAST of mRNA_P-wetherbeei_contig1409.4.1 vs. uniprot
Match: A0A7S1CXU9_CYCTE (GDT1 family protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXU9_CYCTE)

HSP 1 Score: 256 bits (655), Expect = 6.910e-79
Identity = 144/218 (66.06%), Postives = 175/218 (80.28%), Query Frame = 2
Query:  422 ASLADRLTRSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLVAFAGAVGALAVMTVLAVLIGVAFHAVPAALTSTIPFDDYVAVAAFLFFGLNTLKDAYQLPDDSSGIDNEKEEAEEEVKKVGTEKKASAWALILQTFSLVFAAEFGDRSFLTTIALGAAQNPLSVGFGALAAHASATGIAVAGGALLSQYISEKVVGYIGGSLFIVFALTTAVGIF 1075
            ASL D LT +GF+QAFSLVF+SEIGDKTFFIA LLA KTSR+V++ G++GALAVMT+L+VLIG  FHAVPA +   IP DD  AV AF FFGL TLK+A ++  D S +D E  EAEE V+   T K+++AWA I+ TF LVFAAEFGDRSFL+TIAL AAQNPLSV  GA+AAH  ATGIAV+GG+ +++Y+SEKV+G IGG+LF+VFA TTA GIF
Sbjct:  114 ASLFDSLTETGFYQAFSLVFLSEIGDKTFFIAGLLAMKTSRVVSYLGSMGALAVMTILSVLIGQIFHAVPAGIAQGIPLDDVAAVLAFAFFGLKTLKEAIEMDSDGSTMDEEFAEAEETVEGSNTVKQSTAWAQIVSTFVLVFAAEFGDRSFLSTIALSAAQNPLSVAGGAVAAHGLATGIAVSGGSYVAKYVSEKVIGLIGGTLFLVFAATTAFGIF 331          
BLAST of mRNA_P-wetherbeei_contig1409.4.1 vs. uniprot
Match: A0A7S2U7L4_9STRA (GDT1 family protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7L4_9STRA)

HSP 1 Score: 256 bits (655), Expect = 2.330e-78
Identity = 152/253 (60.08%), Postives = 192/253 (75.89%), Query Frame = 2
Query:  323 AAVAGVALHLLPHPLVASAATELPVTLPGALADA-SLADRLTRSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLVAFAGAVGALAVMTVLAVLIGVAFHAVPAALTSTIPFDDYVAVAAFLFFGLNTLKDAYQLPDDS-SGIDNEKEEAEEEVKKVGTEKKASAWALILQTFSLVFAAEFGDRSFLTTIALGAAQNPLSVGFGALAAHASATGIAVAGGALLSQYISEKVVGYIGGSLFIVFALTTAVGIF 1075
            A VA  A  L+  P V++A   L   + G  A A +  D L+++GF+QAFSLVFVSEIGDKTFFIA LLA KTSRL++F G++GALAVMT+++VLIG  FHAVP+ L+  +P DD  AVAAF FFG+ TLK+A ++ ++  S +D E  +AEE V+   + K+ +AW  I   F LVFAAEFGDRSFL TIALGAAQNP+SV  GA+AAHA ATGIAVAGGA L++Y+SEKV+GYIGG+LF+VFA TTA+GIF
Sbjct:  119 ATVATGAAMLVLSPAVSNAVAGLGEIVGGTSASAVTWLDSLSQTGFYQAFSLVFVSEIGDKTFFIAGLLAMKTSRLISFIGSIGALAVMTIISVLIGQIFHAVPSGLSQGLPLDDIAAVAAFAFFGIKTLKEAIEMDEEGVSAMDEEFADAEEAVEGSDSIKQITAWGKIASIFGLVFAAEFGDRSFLATIALGAAQNPVSVAGGAIAAHAMATGIAVAGGAYLAKYVSEKVIGYIGGTLFLVFAFTTALGIF 371          
BLAST of mRNA_P-wetherbeei_contig1409.4.1 vs. uniprot
Match: A0A7S2HML6_9STRA (GDT1 family protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HML6_9STRA)

HSP 1 Score: 246 bits (629), Expect = 1.210e-74
Identity = 136/217 (62.67%), Postives = 171/217 (78.80%), Query Frame = 2
Query:  425 SLADRLTRSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLVAFAGAVGALAVMTVLAVLIGVAFHAVPAALTSTIPFDDYVAVAAFLFFGLNTLKDAYQLPDDSSGIDNEKEEAEEEVKKVGTEKKASAWALILQTFSLVFAAEFGDRSFLTTIALGAAQNPLSVGFGALAAHASATGIAVAGGALLSQYISEKVVGYIGGSLFIVFALTTAVGIF 1075
            S  +++  +GF+QAFSLVFVSEIGDKTFFIA LLA KTSR V+  G+VGALAVMT+++VLIG  FHAVP+ +   IP DD  AV AF FFG  TLK+++ + +  S +D E  EAEE V++  T ++ +AWA I  TF LVFAAEFGDRSFL+TIAL AAQNP+SV  GA+AAHA AT IAV+GG+ +++YISEKV+G IGGSLF+VFA+TTA+GIF
Sbjct:  142 SFMEKVAETGFYQAFSLVFVSEIGDKTFFIAGLLAMKTSRFVSLVGSVGALAVMTIISVLIGQIFHAVPSGIAQGIPLDDVAAVLAFAFFGFKTLKESFDMEEGESVMDEELAEAEETVEESDTIRQRTAWAQIASTFGLVFAAEFGDRSFLSTIALSAAQNPVSVAGGAIAAHAIATAIAVSGGSYIAKYISEKVIGIIGGSLFLVFAVTTALGIF 358          
BLAST of mRNA_P-wetherbeei_contig1409.4.1 vs. uniprot
Match: A0A7S1FYG6_9STRA (GDT1 family protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FYG6_9STRA)

HSP 1 Score: 244 bits (623), Expect = 1.070e-73
Identity = 138/226 (61.06%), Postives = 172/226 (76.11%), Query Frame = 2
Query:  398 TLPGALADASLADRLTRSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLVAFAGAVGALAVMTVLAVLIGVAFHAVPAALTSTIPFDDYVAVAAFLFFGLNTLKDAYQLPDDSSGIDNEKEEAEEEVKKVGTEKKASAWALILQTFSLVFAAEFGDRSFLTTIALGAAQNPLSVGFGALAAHASATGIAVAGGALLSQYISEKVVGYIGGSLFIVFALTTAVGIF 1075
            T+ GA A AS  +    +GF+QAFSLVF+SEIGDKTFFIA LLA KTS+ V+F G++GALAVMTV++ ++G  FHAVP+ +T  +P DD  AV AF FFG  TLKD+Y L D  S +D E  +AE+ V+   T K+ + W  I+ TF LVFAAEFGDRSFL+TIAL AAQNP SV  GA+A HA AT IAV+GG+ +++YISEKV+GYIGG+LF+VFALTTA GIF
Sbjct:  138 TIAGAPA-ASFIESFASTGFYQAFSLVFLSEIGDKTFFIAGLLAMKTSKFVSFVGSLGALAVMTVISCILGQIFHAVPSGITQGLPLDDVAAVVAFAFFGFKTLKDSYDLEDGESVMDEELADAEDAVEGSETIKQVTPWGQIISTFGLVFAAEFGDRSFLSTIALSAAQNPFSVCGGAIAGHALATAIAVSGGSYIAKYISEKVIGYIGGALFLVFALTTAYGIF 362          
BLAST of mRNA_P-wetherbeei_contig1409.4.1 vs. uniprot
Match: A0A7S0DTL7_9EUKA (GDT1 family protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DTL7_9EUKA)

HSP 1 Score: 243 bits (619), Expect = 5.840e-73
Identity = 158/297 (53.20%), Postives = 206/297 (69.36%), Query Frame = 2
Query:  197 ALPQLA---ATRREAEGDAPSL-DGAGRVPARLPRAIVSICKWGAVAAVAGVALHLLPHPLVASAATELPVTLPGALADASLADRLTRSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLVAFAGAVGALAVMTVLAVLIGVAFHAVPAALTSTIPFDDYVAVAAFLFFGLNTLKDAYQLPDDSSGIDNEKEEAEEEVKKVGTEKKASAWALILQTFSLVFAAEFGDRSFLTTIALGAAQNPLSVGFGALAAHASATGIAVAGGALLSQYISEKVVGYIGGSLFIVFALTTAVGIF 1075
            A P LA    +R  A   A SL DG  ++ +R  +A  ++    A  AVAG+ + + P  L+++ A    V    A + A +   L   GF QA SLVF SEIGDKTFFIAALLA + SRL+AF G++ ALA MT+++VLIG  FH VP +LT  +P DDY A+A   +FG+ ++ DAY LPD+S+G+D E EEAE+E+   GT K  + W L+L+ F+LVFAAE GDRSFL TIAL AAQNP+ VG GA+ AH+ ATGIAVA G++L++YISEKVVGY+GG LFIVFA+TTAVG+F
Sbjct:   89 AAPSLALQETSRSVANTKALSLRDGNQKIRSRARQAFAAV----ATLAVAGL-MAIAPGSLISAHAAGDVV----ASSAAGMGGPLVSGGFVQALSLVFASEIGDKTFFIAALLAMRASRLLAFGGSMLALASMTIISVLIGQIFHNVPTSLTGGLPLDDYAAIAFLGYFGVKSILDAYNLPDNSAGVDEELEEAEKEIS--GT-KADTQWQLLLEAFTLVFAAELGDRSFLATIALSAAQNPVMVGLGAILAHSLATGIAVASGSILAKYISEKVVGYVGGVLFIVFAITTAVGVF 373          
BLAST of mRNA_P-wetherbeei_contig1409.4.1 vs. uniprot
Match: A0A7S2X853_9EUKA (GDT1 family protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X853_9EUKA)

HSP 1 Score: 241 bits (614), Expect = 1.560e-72
Identity = 156/291 (53.61%), Postives = 198/291 (68.04%), Query Frame = 2
Query:  203 PQLAATRREAEGDAPSLDGAGRVPARLPRAIVSICKWGAVAAVAGVALHLLPHPLVASAATELPVTLPGALADASLADRLTRSGFFQAFSLVFVSEIGDKTFFIAALLAAKTSRLVAFAGAVGALAVMTVLAVLIGVAFHAVPAALTSTIPFDDYVAVAAFLFFGLNTLKDAYQLPDDSSGIDNEKEEAEEEVKKVGTEKKASAWALILQTFSLVFAAEFGDRSFLTTIALGAAQNPLSVGFGALAAHASATGIAVAGGALLSQYISEKVVGYIGGSLFIVFALTTAVGIF 1075
            P+ +A +R  E    +L         LPR++       A+AAV G++L      L ASA   LP   P AL +          GFFQA SLVF SEIGDKTFFIAALLA ++SRL+AF+G++ ALA MTV++VLIG  FH VPA++T  +P DDY A+A   +FG+ ++ DAY LPD+SSG+D+E EEAE+EV      K  +   LI++ F+LVF AE GDRSFL TIAL AAQNP+ VG GA+ AH+ ATGIAVA GALL++YISEKVVGYIGG LF+ FA+TTA G+F
Sbjct:   81 PRSSAAQRTKENQGATL---------LPRSLPKKTLAAALAAV-GLSLAAPGAMLAASAFPALPAA-PAALMN---------GGFFQALSLVFASEIGDKTFFIAALLAMRSSRLLAFSGSMLALATMTVISVLIGQVFHNVPASITGGLPLDDYAAIAFLGYFGVKSILDAYNLPDESSGVDDELEEAEKEVSGA---KGDTQLQLIIEAFTLVFTAELGDRSFLATIALSAAQNPVMVGAGAILAHSLATGIAVASGALLAKYISEKVVGYIGGVLFLAFAVTTAAGVF 348          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1409.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6M0_9PHAE5.770e-10472.94GDT1 family protein n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A836CPU7_9STRA1.040e-8461.27GDT1 family protein n=1 Tax=Tribonema minus TaxID=... [more]
W7TMF8_9STRA2.460e-8059.38GDT1 family protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A7S2K988_9STRA1.360e-7967.71Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1CXU9_CYCTE6.910e-7966.06GDT1 family protein n=1 Tax=Cyclophora tenuis TaxI... [more]
A0A7S2U7L4_9STRA2.330e-7860.08GDT1 family protein n=2 Tax=Attheya septentrionali... [more]
A0A7S2HML6_9STRA1.210e-7462.67GDT1 family protein n=1 Tax=Helicotheca tamesis Ta... [more]
A0A7S1FYG6_9STRA1.070e-7361.06GDT1 family protein n=1 Tax=Corethron hystrix TaxI... [more]
A0A7S0DTL7_9EUKA5.840e-7353.20GDT1 family protein n=1 Tax=Amorphochlora amoebifo... [more]
A0A7S2X853_9EUKA1.560e-7253.61GDT1 family protein n=1 Tax=Lotharella oceanica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1409contigP-wetherbeei_contig1409:3888..6242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2903.EOD26531
PFAMsUPF0016
Model size1313
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Exons4
Evalue1.1e-71
EggNOG OGsCOG2119@1|root,KOG2881@2759|Eukaryota
Ec32 ortholog descriptionUncharacterised protein family UPF0016
Ec32 orthologEc-18_001880.1
DescriptionGolgi calcium ion transport
Cds size990
COG categoryL
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1409.4.1prot_P-wetherbeei_contig1409.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1409 4123..6154 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186008.4024024-UTR-P-wetherbeei_contig1409:3887..41221683186008.4024024-UTR-P-wetherbeei_contig1409:3887..4122Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1409 3888..4122 -
1683186008.4407797-UTR-P-wetherbeei_contig1409:6154..62421683186008.4407797-UTR-P-wetherbeei_contig1409:6154..6242Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1409 6155..6242 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186008.4112444-CDS-P-wetherbeei_contig1409:4122..42411683186008.4112444-CDS-P-wetherbeei_contig1409:4122..4241Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1409 4123..4241 -
1683186008.4186587-CDS-P-wetherbeei_contig1409:4573..47161683186008.4186587-CDS-P-wetherbeei_contig1409:4573..4716Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1409 4574..4716 -
1683186008.4261255-CDS-P-wetherbeei_contig1409:5038..51421683186008.4261255-CDS-P-wetherbeei_contig1409:5038..5142Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1409 5039..5142 -
1683186008.433428-CDS-P-wetherbeei_contig1409:5530..61541683186008.433428-CDS-P-wetherbeei_contig1409:5530..6154Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1409 5531..6154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1409.4.1

>prot_P-wetherbeei_contig1409.4.1 ID=prot_P-wetherbeei_contig1409.4.1|Name=mRNA_P-wetherbeei_contig1409.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=330bp
MSSRVHVGALAAIPSRSHQIATFRKPCMPPSCIRCMALPQLAATRREAEG
DAPSLDGAGRVPARLPRAIVSICKWGAVAAVAGVALHLLPHPLVASAATE
LPVTLPGALADASLADRLTRSGFFQAFSLVFVSEIGDKTFFIAALLAAKT
SRLVAFAGAVGALAVMTVLAVLIGVAFHAVPAALTSTIPFDDYVAVAAFL
FFGLNTLKDAYQLPDDSSGIDNEKEEAEEEVKKVGTEKKASAWALILQTF
SLVFAAEFGDRSFLTTIALGAAQNPLSVGFGALAAHASATGIAVAGGALL
SQYISEKVVGYIGGSLFIVFALTTAVGIF*
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mRNA from alignment at P-wetherbeei_contig1409:3888..6242-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1409.4.1 ID=mRNA_P-wetherbeei_contig1409.4.1|Name=mRNA_P-wetherbeei_contig1409.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2355bp|location=Sequence derived from alignment at P-wetherbeei_contig1409:3888..6242- (Phaeothamnion wetherbeei SAG_119_79)
CGTCGTGCTGCCATCGCTCTTGGCCACCTCGTCCGCGTTCACGGGTTTGC CTTTGGAAGGTCCACGCACTCTTGCAAGCGCCTGGGGAATGTCGAGCCGC GTTCACGTAGGCGCCTTGGCAGCAATCCCGTCTCGATCGCACCAGATTGC TACATTCAGAAAGCCCTGCATGCCACCATCATGCATCAGATGTATGGCCC TTCCTCAGCTCGCGGCAACGCGTCGAGAAGCCGAAGGCGACGCTCCTTCC CTTGACGGAGCAGGGCGGGTGCCGGCCCGGTTGCCACGTGCCATCGTGTC GATCTGCAAGTGGGGAGCCGTCGCTGCTGTCGCAGGCGTCGCGTTGCATC TTCTGCCGCACCCCCTGGTCGCATCTGCGGCCACAGAACTGCCCGTCACC CTTCCCGGCGCGCTGGCAGACGCGAGCCTGGCGGACCGGCTGACGCGCTC GGGCTTTTTCCAGGCATTCTCGCTTGTCTTCGTCTCGGAGATCGGCGACA AGACGTTCTTCATCGCCGCGCTCCTTGCGGCAAAGACCAGTCGGCTCGTG GCCTTTGCCGGAGCGGTCGGCGCGTTGGCAGTCATGACCGTGCTGGCCGT ACTGATCGGCGTCGCCTTCCATGCCGTGCCGGCGGCGCTTACGTCCACCA TTCCCTTCGACGACTATGTCGCCGTCGCCGCCTTTCTCTTCTTCGGCCTC AACACGCTCAAGGTGAAGAAGCGTTGTTTTCCTTTTGTGACGTTCATTCT GACGACAACTGGCGTTTGGATTCGTCGGTCGCTGCTCGTGAAGTCGGTTT GAGCTTCTTGGGACATGTGCCGCCGCGCGCTCGTGCGTCTTCCTATGATG CTGAGGAAATGGCATTCTTTGTGATGATAGTGTAGTAAAATTAACCGCGA TAGTTGTGCAACGGCCGGCCACGACGCGTGCCTTGGCGCACACCGTCCTG ACCAATAGCTCCGTCCCATTATGTCGGACCCGTTGCTTTCTCTGTGGCTG ACTCAAGGACAGGCGAGCATGCCCTCAAAACCCATCCCCCCAATTTTTTC CGCTTTCTCCATGTGTGCTGCCTGTCCATCGCGAACGGTGTCTCCCGCAG GACGCATACCAGCTGCCGGACGATTCGAGTGGCATCGACAACGAGAAGGA AGAAGCGGAGGAGGAGGTGAAGAAGGTTGGCACTGAGAAGAAAGCTAGCG CATGGTGAGAACACAGAAAGGGGTAGAGAAGAAGCGGCACGAAAGCGTCT TGCTGCTTAGAAAAGGCGCAGGCGTTTTGACTTTTGACTGCTGTTTCGCC CTCTTTCTGTTGCATTGTTTGGGACAAAATGTGCTACTCAGGCAACCAGT CCTCGTTGTTGTTCCCGGATCGTTTGGTTTTACGGTTGCCTGCCGGGATC TCTTGGTCTCTGGCGTGCCCCCGCAGCGTCCCGTACCGGCTCATGGACTG TGCTTAAATCGGACCCCTCCTCTGTGCCGCCCTCCGTTTCGCTTCCCTTC GCGCCTCGCATGTTTCATTCCTGCAGGGCCCTCATTCTGCAGACATTCTC GCTGGTTTTTGCGGCGGAGTTTGGCGACCGCTCCTTTTTGACCACCATCG CGCTGGGGGCCGCACAAAACCCGCTTAGCGTCGGCTTTGGGGCGCTCGCC GCGCATGCGTCAGCAACCGGCGAGTGCCGGCGTGGGGCGGGCGAGGCTTA TGCGGCTTCGATTAATGATCTGTTCGCGCTGTGGTAGAATTGACCGACGT GGAGTCTCTCAACCGTGTACGATTCGTTGTAAAACTTTTGTGCGTCGAGG GAAAAATTTGTATGGAAAAGATTCCCGCTCTCGTCTTTCGTCCTACTCGG ATTGGCTTCCTCCTGTAGCAATTTGCTTGGTTACTTTTTGAGCGGTTTCG ATCTTGTAAGCTACTGCTGCGCTGGCCTCTGCTATCATCTCCGCTTTCCC ACCGAGACCTAACGGTCGAATCGACTAGCCTTCCCGTGCCGCTTCGCGCA GGGATTGCCGTCGCTGGAGGGGCGCTCCTTTCCCAGTACATTTCGGAGAA GGTGGTCGGCTACATCGGCGGCTCGCTCTTCATTGTCTTTGCGCTGACGA CTGCCGTTGGGATCTTTTGAGGACACGGAAGCAACCTCTTACGAGCTCCG CCCGCCCATGTGCAAGTAGACTATGGTTTGGAGGAGGAAAAAGCTTTCGG CCTGACCTAGCGGAAAGGTAGGATTAGATCGATCCACAGCGGAAAGGAAG GAAAAGAATGGCGACGATAGAATCTATATGCCTGAGAGTGTGGGAAAACC ACAGTGGCTGCCGCTGGCACAAAGTCACAACTATAACAAAAGTTGACACA AAGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1409:3888..6242-

>mRNA_P-wetherbeei_contig1409.4.1 ID=mRNA_P-wetherbeei_contig1409.4.1|Name=mRNA_P-wetherbeei_contig1409.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=990bp|location=Sequence derived from alignment at P-wetherbeei_contig1409:3888..6242- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGAGCCGCGTTCACGTAGGCGCCTTGGCAGCAATCCCGTCTCGATC
GCACCAGATTGCTACATTCAGAAAGCCCTGCATGCCACCATCATGCATCA
GATGTATGGCCCTTCCTCAGCTCGCGGCAACGCGTCGAGAAGCCGAAGGC
GACGCTCCTTCCCTTGACGGAGCAGGGCGGGTGCCGGCCCGGTTGCCACG
TGCCATCGTGTCGATCTGCAAGTGGGGAGCCGTCGCTGCTGTCGCAGGCG
TCGCGTTGCATCTTCTGCCGCACCCCCTGGTCGCATCTGCGGCCACAGAA
CTGCCCGTCACCCTTCCCGGCGCGCTGGCAGACGCGAGCCTGGCGGACCG
GCTGACGCGCTCGGGCTTTTTCCAGGCATTCTCGCTTGTCTTCGTCTCGG
AGATCGGCGACAAGACGTTCTTCATCGCCGCGCTCCTTGCGGCAAAGACC
AGTCGGCTCGTGGCCTTTGCCGGAGCGGTCGGCGCGTTGGCAGTCATGAC
CGTGCTGGCCGTACTGATCGGCGTCGCCTTCCATGCCGTGCCGGCGGCGC
TTACGTCCACCATTCCCTTCGACGACTATGTCGCCGTCGCCGCCTTTCTC
TTCTTCGGCCTCAACACGCTCAAGGACGCATACCAGCTGCCGGACGATTC
GAGTGGCATCGACAACGAGAAGGAAGAAGCGGAGGAGGAGGTGAAGAAGG
TTGGCACTGAGAAGAAAGCTAGCGCATGGGCCCTCATTCTGCAGACATTC
TCGCTGGTTTTTGCGGCGGAGTTTGGCGACCGCTCCTTTTTGACCACCAT
CGCGCTGGGGGCCGCACAAAACCCGCTTAGCGTCGGCTTTGGGGCGCTCG
CCGCGCATGCGTCAGCAACCGGGATTGCCGTCGCTGGAGGGGCGCTCCTT
TCCCAGTACATTTCGGAGAAGGTGGTCGGCTACATCGGCGGCTCGCTCTT
CATTGTCTTTGCGCTGACGACTGCCGTTGGGATCTTTTGA
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