mRNA_P-wetherbeei_contig1406.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1406.2.1
Unique NamemRNA_P-wetherbeei_contig1406.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1406.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1406contigP-wetherbeei_contig1406:2197..3311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1115
Hectar predicted targeting categoryother localisation
Exons1
Cds size1041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186007.3195367-UTR-P-wetherbeei_contig1406:2196..22701683186007.3195367-UTR-P-wetherbeei_contig1406:2196..2270Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1406 2197..2270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186007.3271496-CDS-P-wetherbeei_contig1406:2270..33111683186007.3271496-CDS-P-wetherbeei_contig1406:2270..3311Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1406 2271..3311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1406.2.1prot_P-wetherbeei_contig1406.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1406 2271..3311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1406.2.1

>prot_P-wetherbeei_contig1406.2.1 ID=prot_P-wetherbeei_contig1406.2.1|Name=mRNA_P-wetherbeei_contig1406.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=347bp
MDDAFSLSFERNQRRHQSRSRSSLNLQQETFNELAGCCVAEARIEESSSS
ASSQILVEAATNRLQDLLHECLAEYERLRRATSRAEAAFEEALDAQEAEE
LQRMRWQLFCLRLEWDTASAVNAVACDGLAAERIHAVASNALFTAGIAGW
VPCRIVLIRWATTRASRNERRTGLPRRATRRRSPATVVFGTEGTPSELTD
LLSRAIGLSTPLDSTLSTSSTTSESGAGSSTGSSGHEKRLRSRKGTNNNG
ITKIAITDIPGAPSDMCTAFSSLLVPLSMEPIRWLQMPLTPEPYYRIRGA
SGATSACAWRQLVGADDAPSGAEEQDVDAARHEVSLASSLVYYCVEE
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mRNA from alignment at P-wetherbeei_contig1406:2197..3311+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1406.2.1 ID=mRNA_P-wetherbeei_contig1406.2.1|Name=mRNA_P-wetherbeei_contig1406.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1115bp|location=Sequence derived from alignment at P-wetherbeei_contig1406:2197..3311+ (Phaeothamnion wetherbeei SAG_119_79)
CCTCCCCAAACCTCGTTTCCGTCACAGGAAAATACTTTTTCTAGGTGGCA
AACGCTAGCGCCGAGGAAAGGCGAATGGACGACGCTTTCTCTCTCTCGTT
TGAACGAAACCAGCGACGACACCAGTCACGCTCAAGATCATCTCTCAATT
TGCAGCAGGAAACCTTTAACGAGCTGGCAGGCTGCTGCGTCGCCGAAGCG
CGCATCGAAGAATCTAGCTCTTCAGCTTCATCTCAGATCCTGGTGGAGGC
AGCGACAAACAGGCTACAGGATCTCCTCCATGAGTGCCTCGCAGAATATG
AGCGCCTGCGGAGGGCTACTTCACGCGCCGAGGCAGCGTTCGAGGAGGCG
CTCGATGCCCAGGAAGCCGAAGAGCTGCAGCGGATGCGGTGGCAACTCTT
TTGCCTTCGCTTGGAGTGGGACACCGCTAGCGCGGTCAATGCCGTCGCCT
GTGACGGCCTGGCAGCGGAGCGGATCCACGCCGTGGCCTCCAATGCGCTC
TTTACGGCAGGGATCGCCGGTTGGGTCCCGTGTCGCATCGTACTTATCCG
GTGGGCCACTACTCGTGCCAGTCGCAATGAGCGGCGGACAGGGTTGCCAC
GGCGGGCCACTCGCCGCAGATCCCCCGCCACCGTGGTTTTTGGGACTGAA
GGCACGCCGTCGGAGCTGACCGACCTGTTGAGCCGTGCCATCGGCTTAAG
CACCCCCCTTGACTCCACTCTCAGCACCTCCAGCACCACCAGCGAAAGCG
GCGCGGGCAGCAGCACAGGTAGCAGCGGCCATGAGAAGCGCTTGAGGTCT
AGAAAGGGCACCAATAACAACGGCATCACCAAAATCGCGATAACCGATAT
TCCTGGAGCTCCTAGTGACATGTGCACCGCATTCTCGTCGCTTCTGGTGC
CGCTGAGCATGGAGCCAATACGATGGCTCCAGATGCCGTTGACGCCGGAA
CCCTACTACCGCATCCGAGGAGCGTCCGGCGCGACTTCCGCCTGCGCCTG
GAGGCAGCTCGTCGGCGCCGATGACGCTCCTTCCGGCGCCGAAGAACAGG
ATGTCGATGCGGCAAGGCACGAAGTGTCGCTGGCGAGCTCGCTGGTATAC
TACTGCGTTGAGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1406:2197..3311+

>mRNA_P-wetherbeei_contig1406.2.1 ID=mRNA_P-wetherbeei_contig1406.2.1|Name=mRNA_P-wetherbeei_contig1406.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1041bp|location=Sequence derived from alignment at P-wetherbeei_contig1406:2197..3311+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGACGCTTTCTCTCTCTCGTTTGAACGAAACCAGCGACGACACCA
GTCACGCTCAAGATCATCTCTCAATTTGCAGCAGGAAACCTTTAACGAGC
TGGCAGGCTGCTGCGTCGCCGAAGCGCGCATCGAAGAATCTAGCTCTTCA
GCTTCATCTCAGATCCTGGTGGAGGCAGCGACAAACAGGCTACAGGATCT
CCTCCATGAGTGCCTCGCAGAATATGAGCGCCTGCGGAGGGCTACTTCAC
GCGCCGAGGCAGCGTTCGAGGAGGCGCTCGATGCCCAGGAAGCCGAAGAG
CTGCAGCGGATGCGGTGGCAACTCTTTTGCCTTCGCTTGGAGTGGGACAC
CGCTAGCGCGGTCAATGCCGTCGCCTGTGACGGCCTGGCAGCGGAGCGGA
TCCACGCCGTGGCCTCCAATGCGCTCTTTACGGCAGGGATCGCCGGTTGG
GTCCCGTGTCGCATCGTACTTATCCGGTGGGCCACTACTCGTGCCAGTCG
CAATGAGCGGCGGACAGGGTTGCCACGGCGGGCCACTCGCCGCAGATCCC
CCGCCACCGTGGTTTTTGGGACTGAAGGCACGCCGTCGGAGCTGACCGAC
CTGTTGAGCCGTGCCATCGGCTTAAGCACCCCCCTTGACTCCACTCTCAG
CACCTCCAGCACCACCAGCGAAAGCGGCGCGGGCAGCAGCACAGGTAGCA
GCGGCCATGAGAAGCGCTTGAGGTCTAGAAAGGGCACCAATAACAACGGC
ATCACCAAAATCGCGATAACCGATATTCCTGGAGCTCCTAGTGACATGTG
CACCGCATTCTCGTCGCTTCTGGTGCCGCTGAGCATGGAGCCAATACGAT
GGCTCCAGATGCCGTTGACGCCGGAACCCTACTACCGCATCCGAGGAGCG
TCCGGCGCGACTTCCGCCTGCGCCTGGAGGCAGCTCGTCGGCGCCGATGA
CGCTCCTTCCGGCGCCGAAGAACAGGATGTCGATGCGGCAAGGCACGAAG
TGTCGCTGGCGAGCTCGCTGGTATACTACTGCGTTGAGGAG
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