mRNA_P-wetherbeei_contig14053.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14053.2.1
Unique NamemRNA_P-wetherbeei_contig14053.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14053.2.1 vs. uniprot
Match: A0A537TMX2_9PROT (DUF1236 domain-containing protein n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537TMX2_9PROT)

HSP 1 Score: 52.4 bits (124), Expect = 1.960e-5
Identity = 41/114 (35.96%), Postives = 54/114 (47.37%), Query Frame = 1 
Query:  133 LTPSQRESIYRIITER-----PLRPNPVVTERVLPPTAPKPVEPIRSSADAVPPPAIPDRRLKVGAVVXXXIALHPIPVGAVAAVPEIEPFRYAFVGDRVLLVDPRNGRVVAAI 459
            LTP+QR +IYR I  +     P+    +VTE V P            SA A            VG+ V    AL P+P   VA VP +  +RY  + +R+LLVDP  G VVA +
Sbjct:   70 LTPAQRTTIYRTIIPQGRGRGPIVREQIVTEPVAPAXXXXXXXXXXGSAYAY----------AVGSRVADAYALAPVPQSVVATVPAVRSYRYMVINNRLLLVDPATGTVVAEV 173
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14053.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A537TMX2_9PROT1.960e-535.96DUF1236 domain-containing protein n=3 Tax=Alphapro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14053contigP-wetherbeei_contig14053:900..1367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size468
Hectar predicted targeting categoryother localisation
Exons1
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186007.0791514-CDS-P-wetherbeei_contig14053:899..13671683186007.0791514-CDS-P-wetherbeei_contig14053:899..1367Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14053 900..1367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14053.2.1prot_P-wetherbeei_contig14053.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14053 900..1367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14053.2.1

>prot_P-wetherbeei_contig14053.2.1 ID=prot_P-wetherbeei_contig14053.2.1|Name=mRNA_P-wetherbeei_contig14053.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
MPVRHAVRTPAIKPKAQAWKPVTRKPVATAERGEDAEANASAIPLTPSQR
ESIYRIITERPLRPNPVVTERVLPPTAPKPVEPIRSSADAVPPPAIPDRR
LKVGAVVPPVIALHPIPVGAVAAVPEIEPFRYAFVGDRVLLVDPRNGRVV
AAINQ*
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mRNA from alignment at P-wetherbeei_contig14053:900..1367+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14053.2.1 ID=mRNA_P-wetherbeei_contig14053.2.1|Name=mRNA_P-wetherbeei_contig14053.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig14053:900..1367+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGTCCGGCACGCGGTGCGAACCCCAGCCATCAAGCCGAAGGCGCA
GGCGTGGAAGCCCGTCACCCGAAAGCCAGTGGCGACCGCGGAGCGCGGCG
AGGATGCGGAGGCCAACGCGTCGGCCATTCCGCTCACGCCGTCGCAGCGT
GAATCGATTTATCGCATCATCACCGAGCGGCCGTTGCGCCCCAATCCGGT
GGTCACCGAGCGCGTGCTGCCGCCGACGGCACCGAAGCCCGTTGAGCCGA
TCCGATCGTCCGCCGATGCGGTGCCGCCGCCGGCCATTCCGGATCGCCGG
CTCAAGGTCGGCGCGGTCGTGCCGCCGGTCATCGCGCTGCATCCGATTCC
AGTCGGAGCGGTCGCGGCGGTGCCGGAAATCGAGCCGTTCCGTTATGCCT
TTGTCGGCGATCGGGTGTTGCTCGTCGACCCGCGCAATGGACGCGTGGTT
GCGGCGATTAACCAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14053:900..1367+

>mRNA_P-wetherbeei_contig14053.2.1 ID=mRNA_P-wetherbeei_contig14053.2.1|Name=mRNA_P-wetherbeei_contig14053.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig14053:900..1367+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGTCCGGCACGCGGTGCGAACCCCAGCCATCAAGCCGAAGGCGCA
GGCGTGGAAGCCCGTCACCCGAAAGCCAGTGGCGACCGCGGAGCGCGGCG
AGGATGCGGAGGCCAACGCGTCGGCCATTCCGCTCACGCCGTCGCAGCGT
GAATCGATTTATCGCATCATCACCGAGCGGCCGTTGCGCCCCAATCCGGT
GGTCACCGAGCGCGTGCTGCCGCCGACGGCACCGAAGCCCGTTGAGCCGA
TCCGATCGTCCGCCGATGCGGTGCCGCCGCCGGCCATTCCGGATCGCCGG
CTCAAGGTCGGCGCGGTCGTGCCGCCGGTCATCGCGCTGCATCCGATTCC
AGTCGGAGCGGTCGCGGCGGTGCCGGAAATCGAGCCGTTCCGTTATGCCT
TTGTCGGCGATCGGGTGTTGCTCGTCGACCCGCGCAATGGACGCGTGGTT
GCGGCGATTAACCAATAA
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