mRNA_P-wetherbeei_contig14053.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14053.1.1
Unique NamemRNA_P-wetherbeei_contig14053.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14053.1.1 vs. uniprot
Match: A0A6L5FP18_9HYPH (Thioesterase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FP18_9HYPH)

HSP 1 Score: 240 bits (613), Expect = 3.730e-79
Identity = 114/152 (75.00%), Postives = 133/152 (87.50%), Query Frame = 1 
Query:   28 RLETVESFFGIQAAGRLLTEVVAPWVQDLGLLVEAIESGRPAGAPADWQPGAVIRLPFSNKLCRDGGVVCPQALMALADTAMVFACAAAWSGYRPMSAVDQTMHFLRPVKFDVLADARIVRIGRTTCFGRVTLSSASDKRPVGMVSSAYSML 483
            ++E+V+S FG+QAAGRL+ E+VAPWVQDLGLLVE++ES RP GAPA+W PGAVIRLPFS +LC DGG VC QALMA+ADTAMVFAC+AAW+ YRPMS +DQT HFLRPV FDVLADAR++RI RTT FGRVT+ SASD  PVGMVS AY+ML
Sbjct:    6 QVESVQSIFGLQAAGRLMAEIVAPWVQDLGLLVESVESSRPRGAPAEWHPGAVIRLPFSARLCHDGGAVCGQALMAVADTAMVFACSAAWNRYRPMSPIDQTTHFLRPVDFDVLADARVIRISRTTSFGRVTIMSASDHEPVGMVSGAYAML 157
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BLAST of mRNA_P-wetherbeei_contig14053.1.1 vs. uniprot
Match: A0A212Q2L8_9HYPH (Uncharacterized domain 1-containing protein n=1 Tax=Rhodoplanes sp. JGI PP 4-B12 TaxID=1873883 RepID=A0A212Q2L8_9HYPH)

HSP 1 Score: 221 bits (562), Expect = 2.180e-71
Identity = 106/155 (68.39%), Postives = 126/155 (81.29%), Query Frame = 1 
Query:   19 QARRLETVESFFGIQAAGRLLTEVVAPWVQDLGLLVEAIESGRPAGAPADWQPGAVIRLPFSNKLCRDGGVVCPQALMALADTAMVFACAAAWSGYRPMSAVDQTMHFLRPVKFDVLADARIVRIGRTTCFGRVTLSSASDKRPVGMVSSAYSML 483
            +  RL   +  F +Q AGRL+TEV   WVQDL LLVE++E+ RPAGA  DWQPGA +RLP+S K+C DG  VC QALMALADTAMV AC+AAW+GYRPM+++DQT HFLRPV FDV+ADAR+VRIGR T FGRV L +ASD+RPVGMV+SAYSML
Sbjct:    3 EVHRLPAPQISFSLQTAGRLMTEVFPAWVQDLALLVESVETVRPAGALPDWQPGATVRLPYSKKVCSDGAAVCTQALMALADTAMVLACSAAWNGYRPMTSIDQTTHFLRPVNFDVVADARVVRIGRNTSFGRVMLLNASDRRPVGMVASAYSML 157
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BLAST of mRNA_P-wetherbeei_contig14053.1.1 vs. uniprot
Match: A0A127ES07_9HYPH (Thioesterase n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127ES07_9HYPH)

HSP 1 Score: 218 bits (554), Expect = 3.610e-70
Identity = 108/158 (68.35%), Postives = 129/158 (81.65%), Query Frame = 1 
Query:   10 MALQARRLETVESFFGIQAAGRLLTEVVAPWVQDLGLLVEAIESGRPAGAPADWQPGAVIRLPFSNKLCRDGGVVCPQALMALADTAMVFACAAAWSGYRPMSAVDQTMHFLRPVKFDVLADARIVRIGRTTCFGRVTLSSASDKRPVGMVSSAYSML 483
            MA++ARRLE V+  FGI AA R+L E +  W+Q+LGLLVEA+E+GRPA AP DWQPGA++RLPFS +L R GG+VC QALMA ADTAM  ACAA W+G RP SAVDQT+HFLRP   D+LADARIVRIGR T FGRV+LSSA D R +GMVS+AY++L
Sbjct:    1 MAVEARRLEPVDGVFGIAAASRVLIETLPSWMQELGLLVEAVEAGRPASAPPDWQPGAIVRLPFSVRLAR-GGIVCSQALMAAADTAMALACAAVWNGQRPTSAVDQTIHFLRPANVDILADARIVRIGRNTVFGRVSLSSAVDGREIGMVSTAYAIL 157
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BLAST of mRNA_P-wetherbeei_contig14053.1.1 vs. uniprot
Match: A0A833GD90_9HYPH (PaaI family thioesterase n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GD90_9HYPH)

HSP 1 Score: 200 bits (509), Expect = 2.230e-63
Identity = 95/151 (62.91%), Postives = 122/151 (80.79%), Query Frame = 1 
Query:   28 RLETVESFFGIQAAGRLLTEVVAPWVQDLGLLVEAIESGRPAGAPADWQPGAVIRLPFSNKLCRDGGVVCPQALMALADTAMVFACAAAWSGYRPMSAVDQTMHFLRPVKFDVLADARIVRIGRTTCFGRVTLSSASDKRPVGMVSSAYSM 480
            +L+ VE+ FGI+AA RL+TEV+ PW+QDLG+LVEAIE+ RP GA  DW+PGAV+RLPF+ +L RDG  + PQAL A ADTAM+ A +AAW+GYRPMS +DQT+H LR   FDVLADARI+R+ R  CFG+++L SA DKRP+ MVSS Y++
Sbjct:    2 KLQPVETVFGIRAASRLVTEVMPPWIQDLGILVEAIEAVRPPGAAIDWRPGAVLRLPFAKRLSRDGEALWPQALAAFADTAMIVASSAAWNGYRPMSPIDQTVHHLRTASFDVLADARILRVTRAACFGQISLLSAVDKRPLAMVSSVYAV 152
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BLAST of mRNA_P-wetherbeei_contig14053.1.1 vs. uniprot
Match: A0A0X8CKL9_9BRAD (Thioesterase n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A0X8CKL9_9BRAD)

HSP 1 Score: 194 bits (493), Expect = 6.270e-61
Identity = 102/145 (70.34%), Postives = 116/145 (80.00%), Query Frame = 1 
Query:   52 FGIQAAGRLLTEVVAPWVQDLGLLVEAIESGRPAGAPADWQPGAVIRLPFSNKLCRDGGVVCPQALMALADTAMVFACAAAWSGYRPMSAVDQTMHFLRPVKF-DVLADARIVRIGRTTCFGRVTLSSASDKRPVGMVSSAYSML 483
            FGI  AGR+L EV APWVQDLGL VE IE  +PA AP DWQPGAV+R+PFS +LCR+GG+VC QALMALADTAMV A  AA  GYRPM+ VDQT HF+R     DVLADAR+VR+GRT  FGRVTL SASD +PV MVSSA++ML
Sbjct:    9 FGITEAGRILGEVFAPWVQDLGLSVERIEIAQPADAP-DWQPGAVLRMPFSERLCRNGGIVCGQALMALADTAMVIAIFAANRGYRPMTTVDQTTHFMRAASASDVLADARVVRLGRTMSFGRVTLLSASDNKPVAMVSSAFAML 152
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BLAST of mRNA_P-wetherbeei_contig14053.1.1 vs. uniprot
Match: UPI0004979811 (PaaI family thioesterase n=1 Tax=Bradyrhizobium sp. URHD0069 TaxID=1380355 RepID=UPI0004979811)

HSP 1 Score: 191 bits (486), Expect = 7.280e-60
Identity = 98/151 (64.90%), Postives = 118/151 (78.15%), Query Frame = 1 
Query:   34 ETVESFFGIQAAGRLLTEVVAPWVQDLGLLVEAIESGRPAGAPADWQPGAVIRLPFSNKLCRDGGVVCPQALMALADTAMVFACAAAWSGYRPMSAVDQTMHFLRPV-KFDVLADARIVRIGRTTCFGRVTLSSASDKRPVGMVSSAYSML 483
            ET  + F I+ A R+L +V APWVQDLGL +E IE   P+GA ADWQPGA++R+ FS +LCR+GG+VC QALMALADT+MV A  AA  GYRPM+ VDQT HF+R     DVLADAR+VR+GRT  FGRVTLSSASD +PV MVSSA++ML
Sbjct:    4 ETRAAEFDIEEAKRVLGDVFAPWVQDLGLSIERIECAAPSGAAADWQPGAILRMAFSERLCRNGGIVCGQALMALADTSMVIAILAANRGYRPMTTVDQTTHFMRAATSSDVLADARVVRLGRTMSFGRVTLSSASDNKPVAMVSSAFAML 154
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BLAST of mRNA_P-wetherbeei_contig14053.1.1 vs. uniprot
Match: Q6N330_RHOPA (Thioesterase superfamily n=11 Tax=Proteobacteria TaxID=1224 RepID=Q6N330_RHOPA)

HSP 1 Score: 190 bits (482), Expect = 7.260e-59
Identity = 97/163 (59.51%), Postives = 123/163 (75.46%), Query Frame = 1 
Query:    1 ADLMALQARRL-ETVESFFGIQAAGRLLTEVVAPWVQDLGLLVEAIESGRPAGAPADWQPGAVIRLPFSNKLCRDGGVVCPQALMALADTAMVFACAAAWSGYRPMSAVDQTMHFLRPV-KFDVLADARIVRIGRTTCFGRVTLSSASDKRPVGMVSSAYSML 483
            AD   ++ RR+ E   + +G+Q A ++L E  APWV DLGL +EA+E   PAG+P DWQPGA +R+ FS +LCR GGV+C QALMALADTAMVFA  A + G+RPM+ VDQT HFL+ V   DV+ADAR+VR+GRT  FGRVTL  ASD++PV MVSSA++ML
Sbjct:   20 ADNQRVRERRMAEQQAAEYGLQEARQMLQEAFAPWVLDLGLSIEALELDPPAGSPPDWQPGATLRMAFSERLCRSGGVICGQALMALADTAMVFAVCAGYRGFRPMTTVDQTTHFLKAVASTDVIADARLVRLGRTMSFGRVTLLGASDRKPVAMVSSAFAML 182
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BLAST of mRNA_P-wetherbeei_contig14053.1.1 vs. uniprot
Match: A0A525IMR2_BRASZ (PaaI family thioesterase n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525IMR2_BRASZ)

HSP 1 Score: 188 bits (477), Expect = 1.700e-58
Identity = 97/145 (66.90%), Postives = 115/145 (79.31%), Query Frame = 1 
Query:   52 FGIQAAGRLLTEVVAPWVQDLGLLVEAIESGRPAGAPADWQPGAVIRLPFSNKLCRDGGVVCPQALMALADTAMVFACAAAWSGYRPMSAVDQTMHFLRPV-KFDVLADARIVRIGRTTCFGRVTLSSASDKRPVGMVSSAYSML 483
            F I+ A R+L +V APWVQDLGL +  IES  P GA ADWQPGAV+R+ FS +LCR GG+VC QALMALADT+MV A  AA  GYRPM+ VDQT HF+R V + DVLADAR+VR+GRT  FGRVTLSSA+D +PV MVSSA++ML
Sbjct:   10 FDIEEARRVLGDVFAPWVQDLGLSIGNIESAPPPGAAADWQPGAVLRMAFSERLCRHGGIVCGQALMALADTSMVIAILAANRGYRPMTTVDQTTHFMRAVTQSDVLADARVVRLGRTMSFGRVTLSSAADNKPVAMVSSAFAML 154
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BLAST of mRNA_P-wetherbeei_contig14053.1.1 vs. uniprot
Match: UPI001BCBB251 (PaaI family thioesterase n=1 Tax=Bradyrhizobium sp. dw_411 TaxID=2720082 RepID=UPI001BCBB251)

HSP 1 Score: 187 bits (475), Expect = 4.020e-58
Identity = 97/152 (63.82%), Postives = 115/152 (75.66%), Query Frame = 1 
Query:   31 LETVESFFGIQAAGRLLTEVVAPWVQDLGLLVEAIESGRPAGAPADWQPGAVIRLPFSNKLCRDGGVVCPQALMALADTAMVFACAAAWSGYRPMSAVDQTMHFLRPV-KFDVLADARIVRIGRTTCFGRVTLSSASDKRPVGMVSSAYSML 483
            LE     F I+ A R+L +V APWV DLGL + +IE   P GA ADWQPGAV+R+ FS +LCR GG+VC QALMALADT+MV A   A  GYRPM+ VDQT HF+RPV   DVLADAR+VR+GRT  FGRVTLSSA+D +PV MVSSA++ML
Sbjct:    8 LEQKPEEFDIEEARRVLGDVFAPWVLDLGLSISSIEYAPPTGAAADWQPGAVLRMAFSERLCRHGGIVCGQALMALADTSMVIAILTANRGYRPMTTVDQTTHFMRPVMSSDVLADARVVRLGRTMSFGRVTLSSAADNKPVAMVSSAFAML 159
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BLAST of mRNA_P-wetherbeei_contig14053.1.1 vs. uniprot
Match: A0A5H2Z1T6_9BRAD (4HBT domain-containing protein n=29 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A5H2Z1T6_9BRAD)

HSP 1 Score: 187 bits (474), Expect = 4.860e-58
Identity = 98/145 (67.59%), Postives = 115/145 (79.31%), Query Frame = 1 
Query:   52 FGIQAAGRLLTEVVAPWVQDLGLLVEAIESGRPAGAPADWQPGAVIRLPFSNKLCRDGGVVCPQALMALADTAMVFACAAAWSGYRPMSAVDQTMHFLRPVKF-DVLADARIVRIGRTTCFGRVTLSSASDKRPVGMVSSAYSML 483
            FG+  A R+L EV APWVQDL L VE +E  +PA AP DWQPGA++R+PFS +LCR+GGVVC QALMALADTAMV A  AA  GYRPM+ VDQT HF+R V   DVLADAR+VR+GRT  FGRVTL SA+D +PV MVSSA++ML
Sbjct:    9 FGLSDARRILGEVFAPWVQDLNLAVERLEHVQPADAP-DWQPGALLRMPFSERLCRNGGVVCGQALMALADTAMVIAILAANRGYRPMTTVDQTTHFMRAVSSSDVLADARVVRLGRTMSFGRVTLLSAADNKPVAMVSSAFAML 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14053.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L5FP18_9HYPH3.730e-7975.00Thioesterase n=1 Tax=Hyphomicrobiales bacterium Ta... [more]
A0A212Q2L8_9HYPH2.180e-7168.39Uncharacterized domain 1-containing protein n=1 Ta... [more]
A0A127ES07_9HYPH3.610e-7068.35Thioesterase n=1 Tax=Rhodoplanes sp. Z2-YC6860 Tax... [more]
A0A833GD90_9HYPH2.230e-6362.91PaaI family thioesterase n=1 Tax=Pseudorhodoplanes... [more]
A0A0X8CKL9_9BRAD6.270e-6170.34Thioesterase n=3 Tax=Bradyrhizobium TaxID=374 RepI... [more]
UPI00049798117.280e-6064.90PaaI family thioesterase n=1 Tax=Bradyrhizobium sp... [more]
Q6N330_RHOPA7.260e-5959.51Thioesterase superfamily n=11 Tax=Proteobacteria T... [more]
A0A525IMR2_BRASZ1.700e-5866.90PaaI family thioesterase n=1 Tax=Bradyrhizobium sp... [more]
UPI001BCBB2514.020e-5863.82PaaI family thioesterase n=1 Tax=Bradyrhizobium sp... [more]
A0A5H2Z1T6_9BRAD4.860e-5867.594HBT domain-containing protein n=29 Tax=Bradyrhizo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14053contigP-wetherbeei_contig14053:94..579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1380355.JNIJ01000018_gene4490
Preferred nameMA20_08885
PFAMs4HBT
Model size486
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.62e-60
EggNOG OGsCOG2050@1|root,COG2050@2|Bacteria,1MYM3@1224|Proteobacteria,2U5K2@28211|Alphaproteobacteria,3JR03@41294|Bradyrhizobiaceae
DescriptionThioesterase superfamily
Cds size477
COG categoryQ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186007.104991-UTR-P-wetherbeei_contig14053:93..1021683186007.104991-UTR-P-wetherbeei_contig14053:93..102Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14053 94..102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186007.1158004-CDS-P-wetherbeei_contig14053:102..5791683186007.1158004-CDS-P-wetherbeei_contig14053:102..579Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14053 103..579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14053.1.1prot_P-wetherbeei_contig14053.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14053 103..579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14053.1.1

>prot_P-wetherbeei_contig14053.1.1 ID=prot_P-wetherbeei_contig14053.1.1|Name=mRNA_P-wetherbeei_contig14053.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
MALQARRLETVESFFGIQAAGRLLTEVVAPWVQDLGLLVEAIESGRPAGA
PADWQPGAVIRLPFSNKLCRDGGVVCPQALMALADTAMVFACAAAWSGYR
PMSAVDQTMHFLRPVKFDVLADARIVRIGRTTCFGRVTLSSASDKRPVGM
VSSAYSML*
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mRNA from alignment at P-wetherbeei_contig14053:94..579+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14053.1.1 ID=mRNA_P-wetherbeei_contig14053.1.1|Name=mRNA_P-wetherbeei_contig14053.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig14053:94..579+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGACCTTATGGCGTTGCAGGCGCGTCGTCTTGAAACGGTGGAGAGCTT
TTTCGGCATTCAGGCGGCTGGCCGTCTGTTGACCGAAGTGGTGGCTCCCT
GGGTGCAGGATCTCGGCCTGCTGGTGGAGGCGATCGAATCCGGCCGGCCT
GCGGGCGCGCCCGCTGACTGGCAACCCGGTGCCGTGATCCGGCTGCCGTT
TTCCAACAAGCTTTGCCGTGATGGCGGCGTCGTCTGTCCGCAGGCGCTGA
TGGCGCTGGCCGATACCGCCATGGTCTTTGCCTGCGCCGCCGCCTGGAGC
GGCTACCGGCCGATGAGCGCGGTCGACCAGACAATGCACTTCCTGCGCCC
GGTCAAATTCGACGTGCTGGCCGATGCCCGGATCGTGCGGATCGGCAGGA
CCACGTGCTTCGGCCGGGTCACGCTGTCGAGTGCGTCCGACAAGCGGCCG
GTCGGCATGGTGTCGAGCGCCTATTCGATGCTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14053:94..579+

>mRNA_P-wetherbeei_contig14053.1.1 ID=mRNA_P-wetherbeei_contig14053.1.1|Name=mRNA_P-wetherbeei_contig14053.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig14053:94..579+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTTGCAGGCGCGTCGTCTTGAAACGGTGGAGAGCTTTTTCGGCAT
TCAGGCGGCTGGCCGTCTGTTGACCGAAGTGGTGGCTCCCTGGGTGCAGG
ATCTCGGCCTGCTGGTGGAGGCGATCGAATCCGGCCGGCCTGCGGGCGCG
CCCGCTGACTGGCAACCCGGTGCCGTGATCCGGCTGCCGTTTTCCAACAA
GCTTTGCCGTGATGGCGGCGTCGTCTGTCCGCAGGCGCTGATGGCGCTGG
CCGATACCGCCATGGTCTTTGCCTGCGCCGCCGCCTGGAGCGGCTACCGG
CCGATGAGCGCGGTCGACCAGACAATGCACTTCCTGCGCCCGGTCAAATT
CGACGTGCTGGCCGATGCCCGGATCGTGCGGATCGGCAGGACCACGTGCT
TCGGCCGGGTCACGCTGTCGAGTGCGTCCGACAAGCGGCCGGTCGGCATG
GTGTCGAGCGCCTATTCGATGCTCTGA
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