mRNA_P-wetherbeei_contig1405.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1405.3.1
Unique NamemRNA_P-wetherbeei_contig1405.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1405.3.1 vs. uniprot
Match: D8LJN4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJN4_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 4.740e-19
Identity = 41/55 (74.55%), Postives = 50/55 (90.91%), Query Frame = 2 
Query:    2 RPPNAVDYIKRYMGAPTGVDVEAIRLQNEELKRDNDELRTQMRSLNDKIAAEADA 166
            RPPNAVDYIKRYMGAPTGVD EA+RLQNEE KR+N+ELR++++SL +K+ AE DA
Sbjct:   40 RPPNAVDYIKRYMGAPTGVDAEAMRLQNEEFKRENEELRSKLQSLTEKMTAEVDA 94
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BLAST of mRNA_P-wetherbeei_contig1405.3.1 vs. uniprot
Match: A0A836C913_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C913_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 7.480e-18
Identity = 39/51 (76.47%), Postives = 49/51 (96.08%), Query Frame = 2 
Query:    2 RPPNAVDYIKRYMGAPTGVDVEAIRLQNEELKRDNDELRTQMRSLNDKIAA 154
            RP NAVDYIKRYMGAPTGVD+EAIRLQNEELKRDN+ LR+QM+++N+K+++
Sbjct:   40 RPSNAVDYIKRYMGAPTGVDIEAIRLQNEELKRDNELLRSQMQAMNEKLSS 90
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BLAST of mRNA_P-wetherbeei_contig1405.3.1 vs. uniprot
Match: A0A485LCE8_9STRA (Aste57867_19307 protein n=9 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LCE8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.860e-13
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:    2 RPPNAVDYIKRYMGAPTGVDVEAIRLQNEELKRDNDELRTQMRSLNDKIAAE 157
            +PPNAVDYIKR+MGAPTGVDVEA+RL+NEELK+ N EL   +  LN ++ AE
Sbjct:   43 KPPNAVDYIKRFMGAPTGVDVEAMRLENEELKKKNAELTKVIEELNKRLTAE 94
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BLAST of mRNA_P-wetherbeei_contig1405.3.1 vs. uniprot
Match: A0A662YJ52_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YJ52_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.320e-11
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 2 
Query:    2 RPPNAVDYIKRYMGAPTGVDVEAIRLQNEELKRDNDELRTQMRSLNDKIAAE 157
            +PPNAVDY+KR+MGAPTGVDV+A+R +NEELK+ N EL   +  LN ++  E
Sbjct:   36 KPPNAVDYVKRFMGAPTGVDVDALRAENEELKKKNAELIKTIEELNKRLTTE 87
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BLAST of mRNA_P-wetherbeei_contig1405.3.1 vs. uniprot
Match: A0A3R7EKQ2_9STRA (Non-specific serine/threonine protein kinase n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7EKQ2_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.460e-11
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:    2 RPPNAVDYIKRYMGAPTGVDVEAIRLQNEELKRDNDELRTQMRSLNDKIAAE 157
            +PPNAVDYIKR+MGAPTGVDVEA+RL+NEELK+ N EL   +  LN ++ AE
Sbjct: 1196 KPPNAVDYIKRFMGAPTGVDVEAMRLENEELKKKNAELTKVIEELNKRLTAE 1247
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BLAST of mRNA_P-wetherbeei_contig1405.3.1 vs. uniprot
Match: G4ZAR7_PHYSP (Uncharacterized protein n=2 Tax=Oomycota TaxID=4762 RepID=G4ZAR7_PHYSP)

HSP 1 Score: 65.9 bits (159), Expect = 4.890e-11
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 2 
Query:    2 RPPNAVDYIKRYMGAPTGVDVEAIRLQNEELKRDNDELRTQMRSLNDKI 148
            +PPNAVDY+KR+MGAPTG+DV+A+R +NEELK+ N EL   +  LN ++
Sbjct:   42 KPPNAVDYVKRFMGAPTGIDVDALRAENEELKKKNAELIKTIEELNKRV 90
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BLAST of mRNA_P-wetherbeei_contig1405.3.1 vs. uniprot
Match: A0A0W8DQZ1_PHYNI (c-Myc-binding protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DQZ1_PHYNI)

HSP 1 Score: 65.9 bits (159), Expect = 1.040e-10
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 2 
Query:    2 RPPNAVDYIKRYMGAPTGVDVEAIRLQNEELKRDNDELRTQMRSLNDKI 148
            +PPNAVDY+KR+MGAPTG+DV+A+R +NEELK+ N EL   +  LN ++
Sbjct:   42 KPPNAVDYVKRFMGAPTGIDVDALRAENEELKKKNAELIKTIEELNKRV 90
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BLAST of mRNA_P-wetherbeei_contig1405.3.1 vs. uniprot
Match: H3G7M4_PHYRM (Uncharacterized protein n=14 Tax=Peronosporaceae TaxID=4777 RepID=H3G7M4_PHYRM)

HSP 1 Score: 64.3 bits (155), Expect = 1.370e-10
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 2 
Query:    2 RPPNAVDYIKRYMGAPTGVDVEAIRLQNEELKRDNDELRTQMRSLN 139
            +PPNAVDY+KR+MGAPTG+DV+A+R +NEELK+ N EL   +  LN
Sbjct:   33 KPPNAVDYVKRFMGAPTGIDVDALRAENEELKKKNAELIKTIEELN 78
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BLAST of mRNA_P-wetherbeei_contig1405.3.1 vs. uniprot
Match: K3WP52_GLOUD (Uncharacterized protein n=7 Tax=Oomycota TaxID=4762 RepID=K3WP52_GLOUD)

HSP 1 Score: 63.9 bits (154), Expect = 3.350e-10
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 2 
Query:    2 RPPNAVDYIKRYMGAPTGVDVEAIRLQNEELKRDNDELRTQMRSLNDKIAAE 157
            +P NAVDYIKR+MGAPTG+D++A+R +NEELK+ N EL   +  LN ++  E
Sbjct:   43 KPSNAVDYIKRFMGAPTGIDIDALRAENEELKKKNAELIKTIEELNKRLTTE 94
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BLAST of mRNA_P-wetherbeei_contig1405.3.1 vs. uniprot
Match: A0A7S4QA33_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QA33_9DINO)

HSP 1 Score: 63.9 bits (154), Expect = 5.650e-10
Identity = 29/45 (64.44%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:    2 RPPNAVDYIKRYMGAPTGVDVEAIRLQNEELKRDNDELRTQMRSL 136
            RP NA+DYIK+Y+GAPTGVDVE +R +N+ELKR N +L  +M+SL
Sbjct:   64 RPANAIDYIKKYLGAPTGVDVEELRAENDELKRQNADLEAKMQSL 108
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1405.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJN4_ECTSI4.740e-1974.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C913_9STRA7.480e-1876.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A485LCE8_9STRA1.860e-1367.31Aste57867_19307 protein n=9 Tax=Saprolegniaceae Ta... [more]
A0A662YJ52_9STRA1.320e-1159.62Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A3R7EKQ2_9STRA1.460e-1167.31Non-specific serine/threonine protein kinase n=9 T... [more]
G4ZAR7_PHYSP4.890e-1159.18Uncharacterized protein n=2 Tax=Oomycota TaxID=476... [more]
A0A0W8DQZ1_PHYNI1.040e-1059.18c-Myc-binding protein n=1 Tax=Phytophthora nicotia... [more]
H3G7M4_PHYRM1.370e-1063.04Uncharacterized protein n=14 Tax=Peronosporaceae T... [more]
K3WP52_GLOUD3.350e-1055.77Uncharacterized protein n=7 Tax=Oomycota TaxID=476... [more]
A0A7S4QA33_9DINO5.650e-1064.44Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1405contigP-wetherbeei_contig1405:1075..1886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJN4
Preferred namemycbp
Model size538
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Exons2
Evalue1.88e-11
EggNOG OGs2CYZS@1|root,2S7GH@2759|Eukaryota
Cds size132
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186006.8018985-UTR-P-wetherbeei_contig1405:1074..14431683186006.8018985-UTR-P-wetherbeei_contig1405:1074..1443Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1405 1075..1443 -
1683186006.8364658-UTR-P-wetherbeei_contig1405:1849..18861683186006.8364658-UTR-P-wetherbeei_contig1405:1849..1886Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1405 1850..1886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186006.8173428-CDS-P-wetherbeei_contig1405:1443..14671683186006.8173428-CDS-P-wetherbeei_contig1405:1443..1467Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1405 1444..1467 -
1683186006.827237-CDS-P-wetherbeei_contig1405:1741..18491683186006.827237-CDS-P-wetherbeei_contig1405:1741..1849Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1405 1742..1849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1405.3.1prot_P-wetherbeei_contig1405.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1405 1444..1849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1405.3.1

>prot_P-wetherbeei_contig1405.3.1 ID=prot_P-wetherbeei_contig1405.3.1|Name=mRNA_P-wetherbeei_contig1405.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=44bp
MGAPTGVDVEAIRLQNEELKRDNDELRTQMRSLNDKIAAEADA*
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mRNA from alignment at P-wetherbeei_contig1405:1075..1886-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1405.3.1 ID=mRNA_P-wetherbeei_contig1405.3.1|Name=mRNA_P-wetherbeei_contig1405.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=812bp|location=Sequence derived from alignment at P-wetherbeei_contig1405:1075..1886- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCCGCCGAACGCCGTCGATTACATCAAGCGCTACATGGGCGCACCGA
CCGGTGTTGACGTCGAGGCCATTCGCCTGCAGAATGAGGAGCTCAAGCGC
GACAATGATGAGCTGCGGACGCAGATGCGGAGCCTAAACGACAAGGTACG
AGGAACAGCGATCGGCTGGTTCTTTTGTTCTGCTTTTGTTCCGGCGGTAA
GCAAGATGGAGGTTGCTGCTTCTGATATTGGTTTGTTGTAGATTTTGATA
GATCTTTTCTTTTCACGCCGCTGCACGAGTCTTCTTGTCTACGAGGTTTA
TTTTTGATTGCAGTTTTGGCAGATATTGCTGGCGTCGCGGTGTTGTCCCT
GTTGTCTTCCTCTTTGAAGTGAATGCGTGCCCTTTCTCTCCGAACGTCGC
GCTTATTAAAATACTGCAGATCGCGGCCGAAGCGGATGCGTAACTAGAAT
AACGCGTTATCTGCGGACGCCAAGAAGACATCTCTCCATCCTCCGGAGTG
TATGAGACATGGTGCAGAGGGGCTGCTAGCTGCCGTTCTCGACATCTTCA
TCCTTTCTACCGCCGCTATTTTAACGGGCGGGCTCGCCGGCGGGCGCTGG
CCCTCCCTCTGCGGTGGCGACGGCGGGAGGGATCGGCCCTCCGTGGCTGT
GGCTGCCGCCGGCTGCTGCTGTTGGCTGCCGCCGCTGCTCCTTCTTGGTC
CAGCAAGCCTTCACTGGACAAGGAGGGCCTGTTGATAAGTACCGTTCGTG
CAGGCGGGGCAGCCCCAAAAACCACACTAAATAAATTGAAGGGATCTGTT
TTGATGACCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1405:1075..1886-

>mRNA_P-wetherbeei_contig1405.3.1 ID=mRNA_P-wetherbeei_contig1405.3.1|Name=mRNA_P-wetherbeei_contig1405.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig1405:1075..1886- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGCACCGACCGGTGTTGACGTCGAGGCCATTCGCCTGCAGAATGA
GGAGCTCAAGCGCGACAATGATGAGCTGCGGACGCAGATGCGGAGCCTAA
ACGACAAGATCGCGGCCGAAGCGGATGCGTAA
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