mRNA_P-wetherbeei_contig1404.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1404.2.1
Unique NamemRNA_P-wetherbeei_contig1404.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1404.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1404contigP-wetherbeei_contig1404:5363..6879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1517
Hectar predicted targeting categoryother localisation
Exons1
Cds size1125
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186006.4013307-UTR-P-wetherbeei_contig1404:5362..55431683186006.4013307-UTR-P-wetherbeei_contig1404:5362..5543Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1404 5363..5543 -
1683186006.4173057-UTR-P-wetherbeei_contig1404:6668..68791683186006.4173057-UTR-P-wetherbeei_contig1404:6668..6879Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1404 6669..6879 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186006.4094324-CDS-P-wetherbeei_contig1404:5543..66681683186006.4094324-CDS-P-wetherbeei_contig1404:5543..6668Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1404 5544..6668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1404.2.1prot_P-wetherbeei_contig1404.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1404 5544..6668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1404.2.1

>prot_P-wetherbeei_contig1404.2.1 ID=prot_P-wetherbeei_contig1404.2.1|Name=mRNA_P-wetherbeei_contig1404.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=375bp
MWRDAAEAADVVLQVRNANDAARAPLAEDWASFHVDEMAAAEERAGTAAA
AQFAERFPEDTARRAVAAAVAADPLSPHTLGAVAWCARNDGVARDAEVAL
AGDAVAKREALRRQQEALERRLERAEEIFWTGGRGGSGGGGERSGVDEGQ
DSSASEGKSIGNFDGNAPESAPAANGVAMGTSDLVVVNPDATAKNAPVAS
AQGTAPPLAPLQPPPARLQLLREELSDVLRARLAQLSAELMLAAHRRSRA
VAEDDSIAATLLGMRPSEAAERRRHWETERAAALAALDAAAAECHQEHEA
VVAAAARLQEAVDEGRRAIAAVAAATVTAAAAAASAGGGDAGVKDVWQRF
YEDATGYWYRYNEATGESVYETVL*
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mRNA from alignment at P-wetherbeei_contig1404:5363..6879-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1404.2.1 ID=mRNA_P-wetherbeei_contig1404.2.1|Name=mRNA_P-wetherbeei_contig1404.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1517bp|location=Sequence derived from alignment at P-wetherbeei_contig1404:5363..6879- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGGAGCTGGAGGCGCTCTGCGGCGGCACCGGTGCAGAGGCCGCCG
AGGCCGCCGCCGCCGTGCTCGAAGGGCCGCCGCCGGGGACGGTCGGTGGC
GCCGATGCCACGACGGTGGCGGCGTCGGCGGCATGGGAGGTGCTTCACCG
GGATGAAGCGGGCGAGTTCCGCCGCGCCCGCGCCGCGCGCCGCGCGGCAG
AATTCGCCGCCATGTGGCGGGACGCCGCCGAGGCCGCCGACGTCGTCCTC
CAGGTGCGAAACGCCAACGATGCTGCGCGTGCGCCGCTCGCGGAAGATTG
GGCCAGTTTTCACGTTGACGAGATGGCCGCAGCAGAAGAGCGAGCGGGGA
CCGCCGCGGCGGCTCAGTTCGCCGAGCGCTTTCCCGAGGACACGGCCCGG
CGCGCCGTCGCGGCGGCGGTGGCGGCGGACCCGCTGTCGCCGCACACGCT
GGGGGCTGTCGCGTGGTGCGCGCGGAATGACGGCGTAGCGCGCGACGCGG
AGGTGGCGCTGGCGGGGGACGCCGTGGCGAAACGTGAAGCTTTGAGGCGG
CAGCAGGAGGCGCTCGAGCGGCGGCTTGAGCGGGCGGAAGAAATCTTCTG
GACCGGGGGCCGGGGCGGCAGCGGCGGCGGCGGCGAGAGGAGCGGCGTCG
ATGAGGGCCAGGATTCCAGCGCCAGCGAAGGCAAGAGCATTGGAAACTTT
GATGGAAACGCACCAGAGAGTGCTCCCGCCGCCAATGGCGTCGCCATGGG
AACGAGCGACCTCGTCGTGGTCAACCCCGATGCGACGGCCAAGAACGCAC
CCGTTGCGTCAGCGCAAGGGACAGCACCGCCGTTGGCGCCGCTGCAGCCG
CCGCCGGCGCGTCTCCAGCTGCTGCGGGAAGAACTCTCCGATGTCTTGCG
GGCCCGCTTGGCGCAACTCTCTGCTGAACTGATGCTGGCGGCGCACCGCC
GCAGCCGCGCCGTCGCCGAAGACGACAGCATCGCGGCGACGCTGCTCGGG
ATGCGGCCCTCCGAGGCGGCGGAGCGGCGGCGACACTGGGAGACCGAGCG
GGCGGCGGCGCTGGCGGCGCTGGACGCCGCAGCCGCGGAGTGTCACCAGG
AGCACGAGGCGGTGGTGGCGGCGGCGGCGCGGCTGCAGGAGGCGGTAGAC
GAGGGCCGCCGCGCCATCGCCGCCGTCGCGGCTGCCACCGTCACCGCCGC
TGCTGCTGCCGCCTCTGCTGGTGGTGGCGACGCTGGCGTCAAGGATGTGT
GGCAGCGGTTTTATGAGGACGCGACTGGGTATTGGTACCGTTACAATGAG
GCCACCGGCGAATCGGTTTACGAAACGGTGTTATAATTAATTGAGAGGGC
GCGGCTGCAAGGTAGGATTGGTGCCAGCGGGAGAGCTCAGAAACTTGGGT
GCAGTACTTACTGGCCTGTTTGGTGATTTGAAGGGTTTACATCGTCCCAT
GGTGGGGCACCCTGTGACATTTTTTGTGTAGAACTAGACAACGAATCGGT
ACACCTCTCTCGAAAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1404:5363..6879-

>mRNA_P-wetherbeei_contig1404.2.1 ID=mRNA_P-wetherbeei_contig1404.2.1|Name=mRNA_P-wetherbeei_contig1404.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1125bp|location=Sequence derived from alignment at P-wetherbeei_contig1404:5363..6879- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGCGGGACGCCGCCGAGGCCGCCGACGTCGTCCTCCAGGTGCGAAA
CGCCAACGATGCTGCGCGTGCGCCGCTCGCGGAAGATTGGGCCAGTTTTC
ACGTTGACGAGATGGCCGCAGCAGAAGAGCGAGCGGGGACCGCCGCGGCG
GCTCAGTTCGCCGAGCGCTTTCCCGAGGACACGGCCCGGCGCGCCGTCGC
GGCGGCGGTGGCGGCGGACCCGCTGTCGCCGCACACGCTGGGGGCTGTCG
CGTGGTGCGCGCGGAATGACGGCGTAGCGCGCGACGCGGAGGTGGCGCTG
GCGGGGGACGCCGTGGCGAAACGTGAAGCTTTGAGGCGGCAGCAGGAGGC
GCTCGAGCGGCGGCTTGAGCGGGCGGAAGAAATCTTCTGGACCGGGGGCC
GGGGCGGCAGCGGCGGCGGCGGCGAGAGGAGCGGCGTCGATGAGGGCCAG
GATTCCAGCGCCAGCGAAGGCAAGAGCATTGGAAACTTTGATGGAAACGC
ACCAGAGAGTGCTCCCGCCGCCAATGGCGTCGCCATGGGAACGAGCGACC
TCGTCGTGGTCAACCCCGATGCGACGGCCAAGAACGCACCCGTTGCGTCA
GCGCAAGGGACAGCACCGCCGTTGGCGCCGCTGCAGCCGCCGCCGGCGCG
TCTCCAGCTGCTGCGGGAAGAACTCTCCGATGTCTTGCGGGCCCGCTTGG
CGCAACTCTCTGCTGAACTGATGCTGGCGGCGCACCGCCGCAGCCGCGCC
GTCGCCGAAGACGACAGCATCGCGGCGACGCTGCTCGGGATGCGGCCCTC
CGAGGCGGCGGAGCGGCGGCGACACTGGGAGACCGAGCGGGCGGCGGCGC
TGGCGGCGCTGGACGCCGCAGCCGCGGAGTGTCACCAGGAGCACGAGGCG
GTGGTGGCGGCGGCGGCGCGGCTGCAGGAGGCGGTAGACGAGGGCCGCCG
CGCCATCGCCGCCGTCGCGGCTGCCACCGTCACCGCCGCTGCTGCTGCCG
CCTCTGCTGGTGGTGGCGACGCTGGCGTCAAGGATGTGTGGCAGCGGTTT
TATGAGGACGCGACTGGGTATTGGTACCGTTACAATGAGGCCACCGGCGA
ATCGGTTTACGAAACGGTGTTATAA
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