mRNA_P-wetherbeei_contig14038.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14038.3.1
Unique NamemRNA_P-wetherbeei_contig14038.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14038.3.1 vs. uniprot
Match: A0A3B9NVM8_9PROT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Gallionellaceae bacterium TaxID=2052162 RepID=A0A3B9NVM8_9PROT)

HSP 1 Score: 173 bits (438), Expect = 4.130e-53
Identity = 85/118 (72.03%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    1 ADVRIHAVCDALRGAAALGDIGKHFPDSDPGYKNADSRVLLRAVAGKLLAAGYVVANLDSTIIAQAPKMAPHIPLMVLNLAADLNVEPGCISVKATTTERLGFTGRGEGIAAQAIALL 354
            ADV +HAVCDA+ GAAALGDIGKHF D+D  YK+ DSR+LLR VAGK+  AG+ V N+D+TIIAQAPKMAPHIP MV N+AADL +E   ++VKATTTE+LG+TGRGEGIAAQA+ALL
Sbjct:   37 ADVLLHAVCDAILGAAALGDIGKHFSDTDAKYKDIDSRLLLRVVAGKIREAGFRVGNVDATIIAQAPKMAPHIPQMVANIAADLGIEQTAVNVKATTTEQLGYTGRGEGIAAQAVALL 154          
BLAST of mRNA_P-wetherbeei_contig14038.3.1 vs. uniprot
Match: A0A6M4GYM6_9PROT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Usitatibacter rugosus TaxID=2732067 RepID=A0A6M4GYM6_9PROT)

HSP 1 Score: 172 bits (437), Expect = 5.670e-53
Identity = 86/118 (72.88%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    1 ADVRIHAVCDALRGAAALGDIGKHFPDSDPGYKNADSRVLLRAVAGKLLAAGYVVANLDSTIIAQAPKMAPHIPLMVLNLAADLNVEPGCISVKATTTERLGFTGRGEGIAAQAIALL 354
            ADV +HA+CDAL GAA+LGDIGKHFPDSDP YK ADSR LLRAVA  + + GY V N+D+TIIA+AP+MAPHI  M LN+AADLN++P  ++VKATTTE+LGFTGRGEGIAAQAI LL
Sbjct:   37 ADVLLHALCDALLGAASLGDIGKHFPDSDPRYKGADSRELLRAVASLVSSRGYRVENVDATIIAEAPRMAPHIGQMCLNIAADLNLQPDQVNVKATTTEKLGFTGRGEGIAAQAICLL 154          
BLAST of mRNA_P-wetherbeei_contig14038.3.1 vs. uniprot
Match: A0A6L9L4R0_9PROT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Ferrovum sp. TaxID=2609467 RepID=A0A6L9L4R0_9PROT)

HSP 1 Score: 172 bits (437), Expect = 6.440e-53
Identity = 85/118 (72.03%), Postives = 98/118 (83.05%), Query Frame = 1
Query:    1 ADVRIHAVCDALRGAAALGDIGKHFPDSDPGYKNADSRVLLRAVAGKLLAAGYVVANLDSTIIAQAPKMAPHIPLMVLNLAADLNVEPGCISVKATTTERLGFTGRGEGIAAQAIALL 354
            ADV +HAVCDAL GA ALGDIG+HFPDSD  YKNADSRVLLR V   + AAG+V  N+D+TIIAQAP+MAPHIP M+ NLAADL V    +++KATTTE+LGFTGRGEGIAAQA+ LL
Sbjct:   37 ADVLLHAVCDALLGAIALGDIGRHFPDSDAAYKNADSRVLLRQVVALIHAAGFVPINVDATIIAQAPRMAPHIPRMITNLAADLGVSEDVVNIKATTTEKLGFTGRGEGIAAQAVCLL 154          
BLAST of mRNA_P-wetherbeei_contig14038.3.1 vs. uniprot
Match: A0A7Y5DGG5_9PROT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Sideroxydans sp. TaxID=2067989 RepID=A0A7Y5DGG5_9PROT)

HSP 1 Score: 171 bits (432), Expect = 4.080e-52
Identity = 83/118 (70.34%), Postives = 99/118 (83.90%), Query Frame = 1
Query:    1 ADVRIHAVCDALRGAAALGDIGKHFPDSDPGYKNADSRVLLRAVAGKLLAAGYVVANLDSTIIAQAPKMAPHIPLMVLNLAADLNVEPGCISVKATTTERLGFTGRGEGIAAQAIALL 354
            ADV +HA+CDAL GAAALGDIGKHF D+D  +K+ DSR+LLR VA K+ + GY V N+D+TIIAQAPKMAPHIP MV N+AADL +   C++VKATTTE LG+TGRGEGIAAQA+ALL
Sbjct:   37 ADVLLHAICDALLGAAALGDIGKHFADTDAKFKDIDSRILLRDVARKIESVGYRVGNVDATIIAQAPKMAPHIPTMVANIAADLGIGASCVNVKATTTEHLGYTGRGEGIAAQAVALL 154          
BLAST of mRNA_P-wetherbeei_contig14038.3.1 vs. uniprot
Match: A0A7X4W5W8_9GAMM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=3 Tax=Halomonas TaxID=2745 RepID=A0A7X4W5W8_9GAMM)

HSP 1 Score: 170 bits (430), Expect = 1.400e-51
Identity = 83/119 (69.75%), Postives = 99/119 (83.19%), Query Frame = 1
Query:    4 DVRIHAVCDALRGAAALGDIGKHFPDSDPGYKNADSRVLLRAVAGKLLAAGYVVANLDSTIIAQAPKMAPHIPLMVLNLAADLNVEPGCISVKATTTERLGFTGRGEGIAAQAIALLGP 360
            DV +HA+ DAL GA ALGDIG+HFPD+DP +K ADSR LLR V   + AAGY V NLD+T++AQAPKMAPH+  M  N+AADL+VEPG ++VKATTTERLGFTGRGEGIAA+A+ALL P
Sbjct:   38 DVLLHAISDALLGACALGDIGRHFPDTDPAWKGADSRDLLRRVVALVHAAGYRVGNLDATLMAQAPKMAPHVEAMAANVAADLDVEPGAVNVKATTTERLGFTGRGEGIAAEAVALLLP 156          
BLAST of mRNA_P-wetherbeei_contig14038.3.1 vs. uniprot
Match: D5CUS1_SIDLE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=5 Tax=root TaxID=1 RepID=D5CUS1_SIDLE)

HSP 1 Score: 169 bits (428), Expect = 1.410e-51
Identity = 84/118 (71.19%), Postives = 99/118 (83.90%), Query Frame = 1
Query:    1 ADVRIHAVCDALRGAAALGDIGKHFPDSDPGYKNADSRVLLRAVAGKLLAAGYVVANLDSTIIAQAPKMAPHIPLMVLNLAADLNVEPGCISVKATTTERLGFTGRGEGIAAQAIALL 354
            ADV +HA+CDAL GAAALGDIGKHF D+D  YK+ DSR+LLR VA K+ AAGY + N+D+TIIAQAPKMAPHIP MV N+AADL +    ++VKATTTE LG+TGRGEGIAAQA+ALL
Sbjct:   37 ADVLLHAICDALLGAAALGDIGKHFADTDAKYKDIDSRLLLRDVAKKIEAAGYRIGNVDATIIAQAPKMAPHIPQMVTNIAADLGIAHHAVNVKATTTEHLGYTGRGEGIAAQAVALL 154          
BLAST of mRNA_P-wetherbeei_contig14038.3.1 vs. uniprot
Match: A0A1F4BWX2_9PROT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_65_24 TaxID=1797489 RepID=A0A1F4BWX2_9PROT)

HSP 1 Score: 169 bits (429), Expect = 1.450e-51
Identity = 83/122 (68.03%), Postives = 101/122 (82.79%), Query Frame = 1
Query:    1 ADVRIHAVCDALRGAAALGDIGKHFPDSDPGYKNADSRVLLRAVAGKLLAAGYVVANLDSTIIAQAPKMAPHIPLMVLNLAADLNVEPGCISVKATTTERLGFTGRGEGIAAQAIALLGPRP 366
            ADV +HA+ DA+ GAAALGD+G+HFPD+DP Y+NADSRVLLRA A K+  AG+VV N+D+TIIAQAPKMAPH+  MV N+AADL + PG ++VKA TTE LGF GRGEGIAA+A+ALL   P
Sbjct:   39 ADVLLHAITDAVLGAAALGDVGRHFPDTDPRYRNADSRVLLRAAARKVHEAGWVVVNVDATIIAQAPKMAPHVAAMVNNIAADLGIAPGHVNVKAKTTEGLGFAGRGEGIAAEAVALLNYAP 160          
BLAST of mRNA_P-wetherbeei_contig14038.3.1 vs. uniprot
Match: UPI000DB9B80A (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Marinimicrobium alkaliphilum TaxID=2202654 RepID=UPI000DB9B80A)

HSP 1 Score: 169 bits (427), Expect = 2.140e-51
Identity = 84/122 (68.85%), Postives = 98/122 (80.33%), Query Frame = 1
Query:    4 DVRIHAVCDALRGAAALGDIGKHFPDSDPGYKNADSRVLLRAVAGKLLAAGYVVANLDSTIIAQAPKMAPHIPLMVLNLAADLNVEPGCISVKATTTERLGFTGRGEGIAAQAIALLGPRPT 369
            DV +HA+CDAL GAAA+GDIG+HFPD+DP Y+NADSR LLR V  KL AAG+ + N D T++AQAP+MA HI  MV N+AADL V PG I+VKATTTERLGFTGR EGIAAQA+ LL P  T
Sbjct:   38 DVLLHALCDALLGAAAMGDIGRHFPDTDPQYRNADSRALLRMVYAKLKAAGWRLGNADMTVVAQAPRMARHIDAMVANIAADLEVAPGQINVKATTTERLGFTGREEGIAAQAVVLLNPVQT 159          
BLAST of mRNA_P-wetherbeei_contig14038.3.1 vs. uniprot
Match: UPI001679DFB7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Halomonas qijiaojingensis TaxID=980347 RepID=UPI001679DFB7)

HSP 1 Score: 169 bits (427), Expect = 2.500e-51
Identity = 83/120 (69.17%), Postives = 96/120 (80.00%), Query Frame = 1
Query:    4 DVRIHAVCDALRGAAALGDIGKHFPDSDPGYKNADSRVLLRAVAGKLLAAGYVVANLDSTIIAQAPKMAPHIPLMVLNLAADLNVEPGCISVKATTTERLGFTGRGEGIAAQAIALLGPR 363
            DV +HA+CDAL GA ALGDIG+HFPDSDP +  ADSR LLR V   + A GY V NLD+T+IAQAPKMAPHI  MV ++A DL V PG ++VKATTTERLGFTGRGEGIAA+A+ LL PR
Sbjct:   40 DVLLHAICDALLGACALGDIGRHFPDSDPAWAGADSRDLLRHVVELVAARGYRVGNLDATLIAQAPKMAPHIEAMVAHIAEDLKVSPGAVNVKATTTERLGFTGRGEGIAAEAVVLLQPR 159          
BLAST of mRNA_P-wetherbeei_contig14038.3.1 vs. uniprot
Match: UPI001BB8E5F9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Sulfuricella sp. TaxID=2099377 RepID=UPI001BB8E5F9)

HSP 1 Score: 168 bits (425), Expect = 4.730e-51
Identity = 82/118 (69.49%), Postives = 94/118 (79.66%), Query Frame = 1
Query:    1 ADVRIHAVCDALRGAAALGDIGKHFPDSDPGYKNADSRVLLRAVAGKLLAAGYVVANLDSTIIAQAPKMAPHIPLMVLNLAADLNVEPGCISVKATTTERLGFTGRGEGIAAQAIALL 354
            ADV +HA+CDAL GAAALGDIG+HF DSDP YK  DSR LLR     L   GY + NLD+TI+AQAPKMAPHIP MV N+A DL V P C++VKATTTE+LG+TGRGEGIAAQA+ LL
Sbjct:   38 ADVLLHAICDALLGAAALGDIGRHFSDSDPRYKGIDSRELLRETMRLLREQGYNLVNLDTTIVAQAPKMAPHIPTMVANIAEDLGVAPSCVNVKATTTEKLGYTGRGEGIAAQAVCLL 155          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14038.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B9NVM8_9PROT4.130e-5372.032-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
A0A6M4GYM6_9PROT5.670e-5372.882-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
A0A6L9L4R0_9PROT6.440e-5372.032-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
A0A7Y5DGG5_9PROT4.080e-5270.342-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
A0A7X4W5W8_9GAMM1.400e-5169.752-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
D5CUS1_SIDLE1.410e-5171.192-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
A0A1F4BWX2_9PROT1.450e-5168.032-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
UPI000DB9B80A2.140e-5168.852-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
UPI001679DFB72.500e-5169.172-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
UPI001BB8E5F94.730e-5169.492-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14038contigP-wetherbeei_contig14038:1377..1760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog580332.Slit_2230
Preferred nameispF
PFAMsYgbB
Model size384
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00002,RC01440
KEGG koko:K01770,ko:K12506
KEGG ReactionR05633,R05637
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.32e-52
EggNOG OGsCOG0245@1|root,COG0245@2|Bacteria,1MVHA@1224|Proteobacteria,2VR7F@28216|Betaproteobacteria,44VPY@713636|Nitrosomonadales
Ec32 ortholog description2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Ec32 orthologEc-25_000990.1
EC2.7.7.60,4.6.1.12
DescriptionInvolved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP)
Cds size384
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186006.3072715-CDS-P-wetherbeei_contig14038:1376..17601683186006.3072715-CDS-P-wetherbeei_contig14038:1376..1760Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14038 1377..1760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14038.3.1prot_P-wetherbeei_contig14038.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14038 1377..1760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14038.3.1

>prot_P-wetherbeei_contig14038.3.1 ID=prot_P-wetherbeei_contig14038.3.1|Name=mRNA_P-wetherbeei_contig14038.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
ADVRIHAVCDALRGAAALGDIGKHFPDSDPGYKNADSRVLLRAVAGKLLA
AGYVVANLDSTIIAQAPKMAPHIPLMVLNLAADLNVEPGCISVKATTTER
LGFTGRGEGIAAQAIALLGPRPTGSPG*
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mRNA from alignment at P-wetherbeei_contig14038:1377..1760-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14038.3.1 ID=mRNA_P-wetherbeei_contig14038.3.1|Name=mRNA_P-wetherbeei_contig14038.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig14038:1377..1760- (Phaeothamnion wetherbeei SAG_119_79)
GCCGACGTGCGGATCCACGCGGTCTGCGACGCGCTGCGCGGCGCCGCGGC GCTCGGGGATATCGGCAAGCACTTTCCCGACAGCGATCCCGGCTACAAGA ACGCCGACAGCCGCGTGCTGCTGCGGGCCGTCGCCGGCAAGCTGCTGGCC GCAGGGTATGTCGTGGCCAACCTCGATTCGACCATCATCGCGCAGGCCCC GAAAATGGCGCCGCACATACCGCTGATGGTCCTGAACCTTGCCGCCGACC TGAACGTCGAGCCCGGGTGCATCAGCGTGAAGGCAACCACCACGGAGCGG TTGGGCTTCACCGGCCGGGGCGAAGGCATCGCGGCGCAGGCGATCGCGTT GCTCGGGCCGCGGCCAACCGGCAGTCCGGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14038:1377..1760-

>mRNA_P-wetherbeei_contig14038.3.1 ID=mRNA_P-wetherbeei_contig14038.3.1|Name=mRNA_P-wetherbeei_contig14038.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig14038:1377..1760- (Phaeothamnion wetherbeei SAG_119_79)
GCCGACGTGCGGATCCACGCGGTCTGCGACGCGCTGCGCGGCGCCGCGGC
GCTCGGGGATATCGGCAAGCACTTTCCCGACAGCGATCCCGGCTACAAGA
ACGCCGACAGCCGCGTGCTGCTGCGGGCCGTCGCCGGCAAGCTGCTGGCC
GCAGGGTATGTCGTGGCCAACCTCGATTCGACCATCATCGCGCAGGCCCC
GAAAATGGCGCCGCACATACCGCTGATGGTCCTGAACCTTGCCGCCGACC
TGAACGTCGAGCCCGGGTGCATCAGCGTGAAGGCAACCACCACGGAGCGG
TTGGGCTTCACCGGCCGGGGCGAAGGCATCGCGGCGCAGGCGATCGCGTT
GCTCGGGCCGCGGCCAACCGGCAGTCCGGGCTGA
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