mRNA_P-wetherbeei_contig14026.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14026.1.2
Unique NamemRNA_P-wetherbeei_contig14026.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14026.1.2 vs. uniprot
Match: A0A7S3XQ39_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ39_HETAK)

HSP 1 Score: 114 bits (284), Expect = 3.450e-29
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 1
Query:   10 SLFCDLDGVLCDFDAAGCIRVTGRPPGAMHARQMWPRLARAPSFYGNLPWMRDGRQLWDNIRAHRPTILTGVPMGGWAPSQK 255
            ++FCDLDGVL DFD+ G  ++TG+ P  MH + MWP+LARA  FY  L WM DG++LWD I++ RPTILTG+PMG WA +QK
Sbjct:   98 NIFCDLDGVLVDFDS-GVQQITGKMPSEMHPKTMWPQLARAEDFYNGLSWMPDGKELWDRIQSQRPTILTGLPMGRWAEAQK 178          
BLAST of mRNA_P-wetherbeei_contig14026.1.2 vs. uniprot
Match: A0A7S2S4S1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4S1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 8.880e-26
Identity = 50/82 (60.98%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   13 LFCDLDGVLCDFDAAGCIRVTGRPPGAMHARQ-MWPRLARAPSFYGNLPWMRDGRQLWDNIRAHRPTILTGVPMGGWAPSQK 255
            +FCDLDGVL DF+  G   VTGRP  A + R  MW RLAR   FY +LPWM DGR+LW+ I+  +PTILTG+P GGWA SQK
Sbjct:   63 VFCDLDGVLADFER-GVEAVTGRPVNAYNRRSDMWARLARTEGFYSHLPWMEDGRELWEAIKCLKPTILTGLPRGGWAHSQK 143          
BLAST of mRNA_P-wetherbeei_contig14026.1.2 vs. uniprot
Match: A0A1X7Q5M6_AZOLI (Uncharacterized protein n=2 Tax=Azospirillum TaxID=191 RepID=A0A1X7Q5M6_AZOLI)

HSP 1 Score: 101 bits (252), Expect = 1.300e-25
Identity = 45/86 (52.33%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    4 VPSLFCDLDGVLCDFDAAGCIRVTGRPPGAMHARQMWPRLARAPSFYGNLPWMRDGRQLWDNIRAHRPTILTGVPMGGWAPSQKAR 261
            +P+LF DLDGVL DFD  G + VTG+ P  +  ++MW  L+R P F+G L +M D ++LW     HRPTILTG+P+G WAP+QK R
Sbjct:    3 LPALFLDLDGVLADFDR-GVVAVTGKRPEQLPMKEMWRALSRHPDFFGTLEFMHDAQELWAFCAPHRPTILTGLPLGSWAPAQKTR 87          
BLAST of mRNA_P-wetherbeei_contig14026.1.2 vs. uniprot
Match: A0A3S0VGF0_9PROT (Uncharacterized protein n=2 Tax=Azospirillum doebereinerae TaxID=92933 RepID=A0A3S0VGF0_9PROT)

HSP 1 Score: 101 bits (252), Expect = 1.340e-25
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    7 PSLFCDLDGVLCDFDAAGCIRVTGRPPGAMHARQMWPRLARAPSFYGNLPWMRDGRQLWDNIRAHRPTILTGVPMGGWAPSQKAR 261
            P+LF DLDGVL DFD  G +  TGR P A+  ++MW  L+R P F+G L +M D ++LW     HRPTILTG+P+G WAP QK R
Sbjct:    5 PALFLDLDGVLADFDR-GVVAATGRRPEALPMKEMWWALSRHPDFFGTLEFMHDAQELWAFCAPHRPTILTGLPLGSWAPDQKTR 88          
BLAST of mRNA_P-wetherbeei_contig14026.1.2 vs. uniprot
Match: A0A1W9N866_9SPIO (Uncharacterized protein n=1 Tax=Spirochaeta sp. LUC14_002_19_P3 TaxID=1940821 RepID=A0A1W9N866_9SPIO)

HSP 1 Score: 101 bits (252), Expect = 1.890e-25
Identity = 47/82 (57.32%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   10 SLFCDLDGVLCDFDAAGCIRVTGRPPGAMHARQMWPRLARAPSFYGNLPWMRDGRQLWDNIRAHRPTILTGVPMGGWAPSQK 255
             LF DLDGVL DFDA G  + TG  PG +   +MWP LA+ P FY  LPWM DGR+LW+ +R   P ILTG+PMG WA  QK
Sbjct:    7 QLFIDLDGVLADFDA-GVKQATGLLPGELPPSRMWPILAKTPGFYDKLPWMSDGRELWEAVRNFSPAILTGLPMGQWAEGQK 87          
BLAST of mRNA_P-wetherbeei_contig14026.1.2 vs. uniprot
Match: A0A2U1WG72_9PROT (Uncharacterized protein n=3 Tax=unclassified Azospirillum TaxID=2630922 RepID=A0A2U1WG72_9PROT)

HSP 1 Score: 100 bits (249), Expect = 3.610e-25
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 MVPSLFCDLDGVLCDFDAAGCIRVTGRPPGAMHARQMWPRLARAPSFYGNLPWMRDGRQLWDNIRAHRPTILTGVPMGGWAPSQKAR 261
            M P LF DLDGVL DFD  G +  TG+ P  +  ++MW  L+R   F+G L +M D ++LW     HRPTILTG+P+GGWAP QK R
Sbjct:    1 MAPPLFLDLDGVLADFDR-GVVAATGKRPEQLAMKEMWRALSRHADFFGTLEFMHDAQELWSFCAPHRPTILTGLPLGGWAPEQKTR 86          
BLAST of mRNA_P-wetherbeei_contig14026.1.2 vs. uniprot
Match: A0A0F2KVM4_9PROT (Uncharacterized protein n=2 Tax=Azospirillum thiophilum TaxID=528244 RepID=A0A0F2KVM4_9PROT)

HSP 1 Score: 99.0 bits (245), Expect = 1.460e-24
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    1 MVPSLFCDLDGVLCDFDAAGCIRVTGRPPGAMHARQMWPRLARAPSFYGNLPWMRDGRQLWDNIRAHRPTILTGVPMGGWAPSQKAR 261
            M P LF DLDGVL DFD  G + VTGR P  +  ++MW  L+R   F+G L +M D ++LW     HRP ILTG+P+G WAP QK R
Sbjct:    1 MAPPLFLDLDGVLADFDR-GVVAVTGRRPEQLAVKEMWRALSRHADFFGTLEFMHDAQELWSFCAQHRPAILTGLPLGSWAPDQKMR 86          
BLAST of mRNA_P-wetherbeei_contig14026.1.2 vs. uniprot
Match: D3NUX8_AZOS1 (Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) TaxID=137722 RepID=D3NUX8_AZOS1)

HSP 1 Score: 99.0 bits (245), Expect = 1.460e-24
Identity = 46/87 (52.87%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    1 MVPSLFCDLDGVLCDFDAAGCIRVTGRPPGAMHARQMWPRLARAPSFYGNLPWMRDGRQLWDNIRAHRPTILTGVPMGGWAPSQKAR 261
            M P LF DLDGVL DFD  G + VTG+ P     ++MW  L+R   F+G L +M D R+LW     H+PTILTG+PMG WAP QK R
Sbjct:    1 MAPPLFLDLDGVLADFDR-GVVAVTGKRPEQQPMKEMWRALSRHADFFGTLEFMHDARELWAFCAPHQPTILTGLPMGSWAPDQKKR 86          
BLAST of mRNA_P-wetherbeei_contig14026.1.2 vs. uniprot
Match: UPI00192A7E9A (hypothetical protein n=4 Tax=Skermanella TaxID=204447 RepID=UPI00192A7E9A)

HSP 1 Score: 97.4 bits (241), Expect = 5.560e-24
Identity = 47/84 (55.95%), Postives = 54/84 (64.29%), Query Frame = 1
Query:   10 SLFCDLDGVLCDFDAAGCIRVTGRPPGAMHARQMWPRLARAPSFYGNLPWMRDGRQLWDNIRAHRPTILTGVPMGGWAPSQKAR 261
             LF DLDGVL DFD  G   VTGR P  +  ++MW  LA AP FYG L  M D + LW+  + H PTILTG+PMG WAP QK R
Sbjct:    2 KLFLDLDGVLADFDR-GVEAVTGRRPDQLPLKRMWQALATAPDFYGTLEMMHDAQVLWEFCKPHGPTILTGLPMGDWAPEQKRR 84          
BLAST of mRNA_P-wetherbeei_contig14026.1.2 vs. uniprot
Match: A0A1Q3V2D5_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium 69-11 TaxID=1895825 RepID=A0A1Q3V2D5_9PROT)

HSP 1 Score: 97.8 bits (242), Expect = 5.670e-24
Identity = 48/87 (55.17%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    1 MVPSLFCDLDGVLCDFDAAGCIRVTGRPPGAMHARQMWPRLARAPSFYGNLPWMRDGRQLWDNIRAHRPTILTGVPMGGWAPSQKAR 261
            M   LF DLDGVL DFD  G    TGRPP     R MW  L+R   F+G L +M D R+LW   R H PTILTG+P+G WAP+QKAR
Sbjct:    1 MPMKLFLDLDGVLADFDR-GVRETTGRPPEDQGIRGMWRALSRHQDFFGTLEFMADARELWAFCRPHTPTILTGLPLGSWAPTQKAR 86          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14026.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XQ39_HETAK3.450e-2959.76Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2S4S1_9STRA8.880e-2660.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1X7Q5M6_AZOLI1.300e-2552.33Uncharacterized protein n=2 Tax=Azospirillum TaxID... [more]
A0A3S0VGF0_9PROT1.340e-2554.12Uncharacterized protein n=2 Tax=Azospirillum doebe... [more]
A0A1W9N866_9SPIO1.890e-2557.32Uncharacterized protein n=1 Tax=Spirochaeta sp. LU... [more]
A0A2U1WG72_9PROT3.610e-2551.72Uncharacterized protein n=3 Tax=unclassified Azosp... [more]
A0A0F2KVM4_9PROT1.460e-2451.72Uncharacterized protein n=2 Tax=Azospirillum thiop... [more]
D3NUX8_AZOS11.460e-2452.87Uncharacterized protein n=1 Tax=Azospirillum sp. (... [more]
UPI00192A7E9A5.560e-2455.95hypothetical protein n=4 Tax=Skermanella TaxID=204... [more]
A0A1Q3V2D5_9PROT5.670e-2455.17Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14026contigP-wetherbeei_contig14026:210..1000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1307761.L21SP2_1636
PFAMsNT5C
Model size261
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.03e-26
EggNOG OGs2D94Q@1|root,32TSM@2|Bacteria
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186006.0264392-CDS-P-wetherbeei_contig14026:209..3281683186006.0264392-CDS-P-wetherbeei_contig14026:209..328Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14026 210..328 -
1683186006.0367959-CDS-P-wetherbeei_contig14026:502..5891683186006.0367959-CDS-P-wetherbeei_contig14026:502..589Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14026 503..589 -
1683186006.0461724-CDS-P-wetherbeei_contig14026:945..10001683186006.0461724-CDS-P-wetherbeei_contig14026:945..1000Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14026 946..1000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14026.1.2prot_P-wetherbeei_contig14026.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14026 210..1000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14026.1.2

>prot_P-wetherbeei_contig14026.1.2 ID=prot_P-wetherbeei_contig14026.1.2|Name=mRNA_P-wetherbeei_contig14026.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
MVPSLFCDLDGVLCDFDAAGCIRVTGRPPGAMHARQMWPRLARAPSFYGN
LPWMRDGRQLWDNIRAHRPTILTGVPMGGWAPSQKAR
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mRNA from alignment at P-wetherbeei_contig14026:210..1000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14026.1.2 ID=mRNA_P-wetherbeei_contig14026.1.2|Name=mRNA_P-wetherbeei_contig14026.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=791bp|location=Sequence derived from alignment at P-wetherbeei_contig14026:210..1000- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCCCCAGCTTATTTTGCGACTTGGACGGAGTCCTGTGCGATTTCGA CGCAGGTTAGCACTCACTCTCCAAGTTTCCCTCTTTAACAACACTACGAG TGCGGCATTTTCTCGCGCTGCCGCTCTTTAGCATTGAATTTTCTCAAGGG GGTTGGAGGGCTTGTCCAGGATTTTTCGCGCCATTTTTGTTCACTCCCAA GTTCCTCCTTTGTTTTTGTTTTTCAATTAGCCTTGCTGAGCGGTTTACGT AAGATGTTGGGAGGAGGACTGGTGCCCCACTTAACCGCCTTAAGGTAGAC CATCTGCACCGGTCTCACCAGCCTTCCACAGGCTCTTTGAAAAAGTTCAT CCTTTCTTGCCCTCTCATCCACAGGGATCCACCCACTCCGTCCATCACCC TTGCCGCCGAGCAGGATGCATTCGCGTCACGGGGCGCCCCCCAGGTGCCA TGCACGCTCGCCAGATGTGGCCCCGACTTGCCCGGGCGCCGTCGTTCTGT GAGTGACGAGGACCTGAAGCGATTTCATTCTACCGCAAGGTTGTGTTGAG AGATTGCACGATTTTCCAACTACGACGACACCGCAACGCAACGCAACGCT GTTTCTATTACGTTCTCTCCAGCTCTCTATCCCCAAGCAACATCTTTCTT CCTCTTCTCCGCCATGAAACAGATGGCAACCTTCCGTGGATGCGCGATGG GAGGCAGCTCTGGGACAACATTAGGGCACACCGGCCCACCATCCTAACCG GCGTCCCGATGGGAGGATGGGCGCCAAGTCAAAAGGCGAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14026:210..1000-

>mRNA_P-wetherbeei_contig14026.1.2 ID=mRNA_P-wetherbeei_contig14026.1.2|Name=mRNA_P-wetherbeei_contig14026.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig14026:210..1000- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCCCCAGCTTATTTTGCGACTTGGACGGAGTCCTGTGCGATTTCGA
CGCAGCAGGATGCATTCGCGTCACGGGGCGCCCCCCAGGTGCCATGCACG
CTCGCCAGATGTGGCCCCGACTTGCCCGGGCGCCGTCGTTCTATGGCAAC
CTTCCGTGGATGCGCGATGGGAGGCAGCTCTGGGACAACATTAGGGCACA
CCGGCCCACCATCCTAACCGGCGTCCCGATGGGAGGATGGGCGCCAAGTC
AAAAGGCGAGA
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