mRNA_P-wetherbeei_contig1402.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1402.4.1
Unique NamemRNA_P-wetherbeei_contig1402.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1402.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1402contigP-wetherbeei_contig1402:2042..6484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3401
Hectar predicted targeting categorysignal peptide
Exons4
Cds size2385
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1402.4.1prot_P-wetherbeei_contig1402.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1402 2607..6033 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186005.7243605-UTR-P-wetherbeei_contig1402:2041..26061683186005.7243605-UTR-P-wetherbeei_contig1402:2041..2606Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1402 2042..2606 +
1683186005.7877398-UTR-P-wetherbeei_contig1402:6033..64841683186005.7877398-UTR-P-wetherbeei_contig1402:6033..6484Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1402 6034..6484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186005.7485833-CDS-P-wetherbeei_contig1402:2606..26901683186005.7485833-CDS-P-wetherbeei_contig1402:2606..2690Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1402 2607..2690 +
1683186005.7592382-CDS-P-wetherbeei_contig1402:2910..39511683186005.7592382-CDS-P-wetherbeei_contig1402:2910..3951Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1402 2911..3951 +
1683186005.76806-CDS-P-wetherbeei_contig1402:4323..45391683186005.76806-CDS-P-wetherbeei_contig1402:4323..4539Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1402 4324..4539 +
1683186005.7779691-CDS-P-wetherbeei_contig1402:4989..60331683186005.7779691-CDS-P-wetherbeei_contig1402:4989..6033Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1402 4990..6033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1402.4.1

>prot_P-wetherbeei_contig1402.4.1 ID=prot_P-wetherbeei_contig1402.4.1|Name=mRNA_P-wetherbeei_contig1402.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=795bp
MPTSALLCITQLLEAVYHVLVGRTELHDECLAHAVQSFHAAYGPPVGPRS
GAAEAATAASGSGSQQLAVLENDETSAHGLLASTLLGFQFIGAFRRGLVR
DPRPVAAVFHPERELACAAAAISGSGRSRGAAASGAAGGEVSGNSGCGSS
GDGDGYGDGGSVGGGSWSGGGGSSGTTADLAGAYFAKAPWFAHSDPSKEG
ASAAGVVAATAAPGVSHVLPSLAEPCSALRVSRAINFLVHRYMPVAINPA
PRGASDDDGAAAAAHYADSGVGDGEGVIGDGGGSIGNGGSNGGGNSSGGR
RVSCQGGSECDGRCNPRPSDSRTAAAGTTAATVAGAGGSSQYSQAAASSA
EGASRSSLEQAALLSEWCLERSVRQAEDGGLMMVMKALALRNCVMICLPF
SPALGRQLATGWSAVMPLMRYCPGLLAFFPIVPLQATLVVAGGGGVVDPR
AYNMMRQAWEVCQRNCGNTLMPSVPFGTPYSRRMAEHAVGGGRVYDGLAL
RWNRWLPVSVAESGAEVGVLLPPPAGPAGPPPLGAMSLLPGAAAASPRAR
ATPLPPVGANAPRKGVFSPAKAEGRYASPKPVGAFLPFGDEPESPPGAGA
LPRRDAAALSSSSAWLPFQPLEENAAGCAAAPTAGEGATSGVAAVGPGGG
VGLEPEEAWERAAETSQLAATAAAASAAAAAAAAATDGTPLRHAPLELRS
ASSVTGSPSFDILDMLADDSDNEFDLPPASPPASPPAGPRGAAAETAPEK
SPSELPPQQPPPPQQATAAVRLLGLLSREAERGGAPRGRVQSMQ*
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mRNA from alignment at P-wetherbeei_contig1402:2042..6484+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1402.4.1 ID=mRNA_P-wetherbeei_contig1402.4.1|Name=mRNA_P-wetherbeei_contig1402.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4443bp|location=Sequence derived from alignment at P-wetherbeei_contig1402:2042..6484+ (Phaeothamnion wetherbeei SAG_119_79)
CGCCGCCGCCGCCAACGCGGCCCGGGCGGGTGCGGCGGCGGACGCTTCTC
TTTTCATCGAACGCGTGGAGCGCGTGACGTTCTCCCCGTCGCCGGCATCG
GGTCTCGCGGGATCGCTGCTCCACCGCTATCTCCGCTCTTTCCTTGCGTG
CTTTGGACGCCACTCAATCCCTTTCGGTGTCCAGCCCAGCGGCCTCGTCT
CGGCGCTCCTGGCACCTGATGCCAGGCTCGACGGCAGCGGCGGCACCGGC
GACGACGCCTTGGTGCGAAGGGTTCTCGAGCAATCGATAGCGTTCGGTGT
CGCCGCTGTCGGCGCTCTCCTTTCCGGGGAGTGCTCGGACGGGAGGGACC
ACGCCCGGCTGATCCTGCGGTCGAACCTCGGCCAGCAATATGCCCTGCAG
GCAGAGGTATTGAGCAACAATCGCGCATCTGCCGGCAGATTCGGCATCGG
CGGCGGCGCGAGTGGCTTCGGCGGCGTCTACGGCAGCGGCGACGGCGCCG
ATTGCGGCGGATTTGACGCGGTCGGATTGGATGGCGGTGGCGGCAGCAGC
GGTGGATACTCGGAAATGCCGACGTCCGCGCTGCTGTGCATCACGCAACT
CCTCGAAGCGGTCTACCACGTCCTTGTGGGGAGAACGGAATTGCATGATG
TGAGGGACGGGGGTTATCCGGTTTGAGTTTGAGGGCATTGCAGTTGGCAT
CTGCTCCTGAGTAAGAAAAGCAAGGGCTTTCTGCCCGGGCCAGACGGCTG
GGGGGGGTGGGCTGGTCCGCTTTCCTCTGTATTGCCAATTTCCGCTGCCT
TGCTGAATATGTTCGCCAGCTTTTTGGCTTCCGTTACCAACTGCGATGCG
TCTGGCGGCAACAACGCAGGAATGTCTCGCGCACGCCGTCCAGTCTTTCC
ACGCCGCCTACGGCCCCCCGGTGGGACCCCGTTCAGGCGCCGCGGAGGCC
GCAACGGCGGCATCAGGATCGGGGTCGCAGCAGCTTGCGGTCCTCGAGAA
CGACGAAACATCAGCGCATGGGCTGTTGGCCTCCACGCTCCTGGGATTTC
AGTTCATCGGCGCATTCCGGCGCGGCCTCGTGCGCGACCCACGCCCCGTC
GCCGCGGTGTTCCACCCCGAGCGGGAGCTGGCATGCGCCGCCGCAGCCAT
CTCCGGTTCCGGCCGATCTCGAGGCGCGGCCGCCTCCGGGGCAGCCGGCG
GCGAGGTGAGCGGCAACAGCGGCTGCGGGAGCAGCGGCGATGGTGACGGC
TACGGCGATGGTGGCAGCGTCGGCGGCGGAAGCTGGAGCGGCGGCGGCGG
GAGCAGCGGCACTACCGCCGACCTGGCTGGCGCGTACTTCGCCAAAGCGC
CATGGTTCGCGCACTCTGATCCATCAAAAGAGGGTGCTTCGGCGGCGGGC
GTGGTGGCCGCCACAGCAGCACCCGGCGTATCGCACGTCCTCCCGTCCCT
GGCGGAGCCCTGCTCGGCCCTACGTGTGAGCCGGGCAATCAATTTTTTGG
TGCATCGCTACATGCCCGTCGCAATCAACCCGGCTCCTAGAGGCGCTAGC
GACGACGATGGTGCTGCTGCTGCCGCACACTACGCCGATAGCGGCGTTGG
CGATGGCGAAGGCGTCATTGGCGATGGCGGTGGCAGCATTGGGAATGGCG
GCAGCAACGGCGGCGGCAACAGCAGCGGCGGCCGCAGGGTTTCGTGTCAG
GGCGGGTCAGAATGCGACGGGCGCTGTAATCCGCGACCGTCAGACAGTCG
CACCGCCGCAGCTGGCACCACTGCCGCTACCGTCGCGGGAGCGGGCGGAT
CCAGCCAGTATTCTCAGGCCGCTGCAAGTTCTGCCGAAGGCGCTTCCCGC
AGCTCGCTGGAGCAGGCGGCTCTTCTCTCAGAGTGGTGCTTGGAGCGCTC
GGTTCGGCAGGTGTGTTCATCGGCGTGCTGCTCTTTGTTTCATTCTTCTA
AGAATGCGTTGGCTTGTACTAAAGACAGAGATAGGTGGCCGTTCAGAGAC
GCCTGGTCCTGCCGCGTGCTAAGAGATGGCCGTTTCTCCCCAAGTGATCG
GGGCAGATCAGCCTCCGTTTCCAATTTAAATGGACCCGCCCCATCCACCT
ACACGATGTGCTTCGCTGTCCCATATTCCGCGATGCTACGCGTTTCTTCG
CCCTTCACCGCGCCCTGCCGTGCCGTGTCGCACTTTGCTCACGCTCTTTT
GCTGGACTTCGCTCTGGCTGCTCTTCATTCTTTGCTGCCTCGCTCCACCT
CCTCCTCACTCGAGGACTCGCGCTGACTGCAGGCGGAGGACGGCGGCCTG
ATGATGGTGATGAAGGCGCTCGCGCTGCGCAACTGCGTAATGATCTGCCT
GCCGTTCTCGCCGGCGCTCGGGCGGCAGCTCGCGACCGGCTGGTCGGCGG
TCATGCCGCTAATGCGGTACTGCCCGGGCCTGCTCGCCTTTTTCCCCATC
GTCCCACTGCAGGCCACCCTCGTGGTGGCAGGCGGCGGCGGCGTCGTGGT
AAGTGCGGTTCTGTATCAGTATGGGCTGGCTGTGGCGGGGCAGGCCGGAG
CCGGGTTTGGGGCGCGGCCTGACGTTGGGACGGGTTTGTGGCAGCGCTGC
CGGTTCGTTTCTGGCCTTTTATCGTGTTTCCAATGTCTTCTCCTGCGGTT
GGGGCGGTGGGCACTGCTAAGGATCGTGCAAAGACGTACTTCTGCCGTGT
GCTGCCTTCTGGTTAGGATGGCTGCCTGCTTTAGCGAATATCGAAGCTCT
ATCTGACTGTTGCCGCTCCTGCGTGCACTCTGGCGGTTGGTTTGCCAATG
AAATCTTTCGCCTGGCGCGGTTTCCCGTTCTATCTTTGTCCATGGTTTAA
CCTCCCACGTGCCCCCTTTTTGGTACTGAAATCGGTTGCCGAAAACCGCG
CTTCTTCTTACGCTGGAAATGCCTCTGCCGACCGTCCGGGCATTGCAGGA
CCCCCGGGCCTACAACATGATGCGTCAAGCGTGGGAGGTCTGCCAGCGGA
ACTGCGGCAACACTCTCATGCCGTCGGTGCCCTTCGGCACCCCCTACTCG
CGGCGCATGGCAGAGCACGCCGTCGGCGGCGGTCGCGTCTACGACGGCCT
CGCACTGCGCTGGAACCGTTGGCTGCCCGTCTCGGTGGCGGAGTCCGGCG
CCGAAGTCGGGGTGCTACTGCCGCCGCCGGCGGGGCCGGCGGGGCCCCCA
CCGCTAGGGGCGATGTCATTGCTGCCGGGGGCCGCGGCGGCATCACCGCG
GGCGAGAGCGACGCCATTGCCGCCCGTGGGAGCGAATGCGCCGCGAAAGG
GAGTATTCTCGCCGGCAAAGGCGGAGGGTAGGTACGCATCGCCAAAGCCA
GTGGGCGCCTTCTTGCCGTTCGGTGATGAGCCAGAGTCGCCGCCGGGTGC
AGGGGCGCTGCCGCGAAGAGATGCGGCAGCGCTGTCATCTTCGTCGGCGT
GGTTGCCGTTCCAGCCGCTGGAGGAAAACGCGGCAGGATGCGCGGCGGCA
CCGACGGCAGGAGAGGGAGCGACGTCGGGCGTGGCAGCGGTAGGACCGGG
AGGGGGAGTGGGACTAGAGCCGGAGGAAGCGTGGGAGAGAGCGGCAGAGA
CGTCGCAGCTGGCAGCGACGGCAGCGGCAGCCTCGGCGGCGGCCGCGGCG
GCGGCCGCTGCCACGGATGGCACGCCGCTGCGTCATGCACCGCTGGAGCT
GCGTTCTGCCTCGTCCGTTACCGGGTCGCCGTCCTTCGACATACTGGATA
TGTTGGCAGACGACAGTGACAACGAGTTTGACCTGCCGCCGGCGTCGCCG
CCGGCGTCGCCGCCGGCGGGTCCCCGAGGGGCAGCGGCGGAAACGGCGCC
TGAAAAGTCGCCGTCGGAGCTTCCGCCGCAGCAGCCGCCGCCGCCGCAGC
AGGCGACGGCGGCGGTCCGTCTCTTGGGGCTGCTTTCTCGGGAGGCGGAG
CGAGGGGGGGCGCCGAGAGGGCGGGTACAGTCCATGCAGTAGAAATTGCG
AGGGAAGGATTGAAGGAATGCCGGAAGAGGCTTCGGCTGGCACTAGAAAG
CGGAGCGGAGGTAGGGGCCAGGAAGCTGTCTCATCATTTGGTAAGCCGCG
CGCAGAAGCATCCGCGGCTTTGGGGCATCGCTTCATCATTCGGCCTGCGG
CCTGCGGGCGGCGGGAACGCACCTGCTGGGAGCTGACTGGCAGAGGCAGA
AGGGGGATGGATCGATCCCATGCAAGTAGGAGAGCTAGATCGAATGGTCG
GATCAGAGGATAGGCGGCGGCAAAAGAGAAGGAAGAAGTGGGGTGACGCT
CGCACTTTCCCCCCTGAACTCCTTCTTGCAAGAGCCTTTTAAGGGAGGCT
GCAACAGCAGCATGTAAAAGGGAAACATTGGATGTCTCAAAGTCTACATC
GCCACCTGGCCCCAGTCGCTGATCTCAGCCGCCGCCACCATGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1402:2042..6484+

>mRNA_P-wetherbeei_contig1402.4.1 ID=mRNA_P-wetherbeei_contig1402.4.1|Name=mRNA_P-wetherbeei_contig1402.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2385bp|location=Sequence derived from alignment at P-wetherbeei_contig1402:2042..6484+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGACGTCCGCGCTGCTGTGCATCACGCAACTCCTCGAAGCGGTCTA
CCACGTCCTTGTGGGGAGAACGGAATTGCATGATGAATGTCTCGCGCACG
CCGTCCAGTCTTTCCACGCCGCCTACGGCCCCCCGGTGGGACCCCGTTCA
GGCGCCGCGGAGGCCGCAACGGCGGCATCAGGATCGGGGTCGCAGCAGCT
TGCGGTCCTCGAGAACGACGAAACATCAGCGCATGGGCTGTTGGCCTCCA
CGCTCCTGGGATTTCAGTTCATCGGCGCATTCCGGCGCGGCCTCGTGCGC
GACCCACGCCCCGTCGCCGCGGTGTTCCACCCCGAGCGGGAGCTGGCATG
CGCCGCCGCAGCCATCTCCGGTTCCGGCCGATCTCGAGGCGCGGCCGCCT
CCGGGGCAGCCGGCGGCGAGGTGAGCGGCAACAGCGGCTGCGGGAGCAGC
GGCGATGGTGACGGCTACGGCGATGGTGGCAGCGTCGGCGGCGGAAGCTG
GAGCGGCGGCGGCGGGAGCAGCGGCACTACCGCCGACCTGGCTGGCGCGT
ACTTCGCCAAAGCGCCATGGTTCGCGCACTCTGATCCATCAAAAGAGGGT
GCTTCGGCGGCGGGCGTGGTGGCCGCCACAGCAGCACCCGGCGTATCGCA
CGTCCTCCCGTCCCTGGCGGAGCCCTGCTCGGCCCTACGTGTGAGCCGGG
CAATCAATTTTTTGGTGCATCGCTACATGCCCGTCGCAATCAACCCGGCT
CCTAGAGGCGCTAGCGACGACGATGGTGCTGCTGCTGCCGCACACTACGC
CGATAGCGGCGTTGGCGATGGCGAAGGCGTCATTGGCGATGGCGGTGGCA
GCATTGGGAATGGCGGCAGCAACGGCGGCGGCAACAGCAGCGGCGGCCGC
AGGGTTTCGTGTCAGGGCGGGTCAGAATGCGACGGGCGCTGTAATCCGCG
ACCGTCAGACAGTCGCACCGCCGCAGCTGGCACCACTGCCGCTACCGTCG
CGGGAGCGGGCGGATCCAGCCAGTATTCTCAGGCCGCTGCAAGTTCTGCC
GAAGGCGCTTCCCGCAGCTCGCTGGAGCAGGCGGCTCTTCTCTCAGAGTG
GTGCTTGGAGCGCTCGGTTCGGCAGGCGGAGGACGGCGGCCTGATGATGG
TGATGAAGGCGCTCGCGCTGCGCAACTGCGTAATGATCTGCCTGCCGTTC
TCGCCGGCGCTCGGGCGGCAGCTCGCGACCGGCTGGTCGGCGGTCATGCC
GCTAATGCGGTACTGCCCGGGCCTGCTCGCCTTTTTCCCCATCGTCCCAC
TGCAGGCCACCCTCGTGGTGGCAGGCGGCGGCGGCGTCGTGGACCCCCGG
GCCTACAACATGATGCGTCAAGCGTGGGAGGTCTGCCAGCGGAACTGCGG
CAACACTCTCATGCCGTCGGTGCCCTTCGGCACCCCCTACTCGCGGCGCA
TGGCAGAGCACGCCGTCGGCGGCGGTCGCGTCTACGACGGCCTCGCACTG
CGCTGGAACCGTTGGCTGCCCGTCTCGGTGGCGGAGTCCGGCGCCGAAGT
CGGGGTGCTACTGCCGCCGCCGGCGGGGCCGGCGGGGCCCCCACCGCTAG
GGGCGATGTCATTGCTGCCGGGGGCCGCGGCGGCATCACCGCGGGCGAGA
GCGACGCCATTGCCGCCCGTGGGAGCGAATGCGCCGCGAAAGGGAGTATT
CTCGCCGGCAAAGGCGGAGGGTAGGTACGCATCGCCAAAGCCAGTGGGCG
CCTTCTTGCCGTTCGGTGATGAGCCAGAGTCGCCGCCGGGTGCAGGGGCG
CTGCCGCGAAGAGATGCGGCAGCGCTGTCATCTTCGTCGGCGTGGTTGCC
GTTCCAGCCGCTGGAGGAAAACGCGGCAGGATGCGCGGCGGCACCGACGG
CAGGAGAGGGAGCGACGTCGGGCGTGGCAGCGGTAGGACCGGGAGGGGGA
GTGGGACTAGAGCCGGAGGAAGCGTGGGAGAGAGCGGCAGAGACGTCGCA
GCTGGCAGCGACGGCAGCGGCAGCCTCGGCGGCGGCCGCGGCGGCGGCCG
CTGCCACGGATGGCACGCCGCTGCGTCATGCACCGCTGGAGCTGCGTTCT
GCCTCGTCCGTTACCGGGTCGCCGTCCTTCGACATACTGGATATGTTGGC
AGACGACAGTGACAACGAGTTTGACCTGCCGCCGGCGTCGCCGCCGGCGT
CGCCGCCGGCGGGTCCCCGAGGGGCAGCGGCGGAAACGGCGCCTGAAAAG
TCGCCGTCGGAGCTTCCGCCGCAGCAGCCGCCGCCGCCGCAGCAGGCGAC
GGCGGCGGTCCGTCTCTTGGGGCTGCTTTCTCGGGAGGCGGAGCGAGGGG
GGGCGCCGAGAGGGCGGGTACAGTCCATGCAGTAG
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