mRNA_P-wetherbeei_contig1402.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1402.3.1
Unique NamemRNA_P-wetherbeei_contig1402.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1402.3.1 vs. uniprot
Match: A0A261XWW3_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XWW3_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 6.550e-5
Identity = 24/59 (40.68%), Postives = 34/59 (57.63%), Query Frame = 2 
Query:  212 PLNPEGWGHLEI*RMQPRRRVPLRATCDRCSRLRKKCDSMKPWCSRCQRANSSCVYSPL 388
            PL P      E    +P++R  +   C+RC RL++KCD+  P C RCQ +N  CVY+ L
Sbjct:  301 PLIPPEESMAESLDKKPKKRAKVPQACERCRRLKRKCDAQYPVCRRCQYSNDECVYANL 359
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1402.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A261XWW3_9FUNG6.550e-540.68Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1402contigP-wetherbeei_contig1402:1176..1967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog31870.EFQ33702
PFAMsZn_clus
Model size436
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.58e-07
EggNOG OGs2EIBN@1|root,2SNSW@2759|Eukaryota,3AK0B@33154|Opisthokonta,3PDF6@4751|Fungi,3RCA3@4890|Ascomycota,21B1U@147550|Sordariomycetes,1F453@1028384|Glomerellales
DescriptionGAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain
Cds size183
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186005.874644-UTR-P-wetherbeei_contig1402:1175..14281683186005.874644-UTR-P-wetherbeei_contig1402:1175..1428Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1402 1176..1428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186005.8858073-CDS-P-wetherbeei_contig1402:1428..14721683186005.8858073-CDS-P-wetherbeei_contig1402:1428..1472Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1402 1429..1472 +
1683186005.907902-CDS-P-wetherbeei_contig1402:1828..19671683186005.907902-CDS-P-wetherbeei_contig1402:1828..1967Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1402 1829..1967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1402.3.1prot_P-wetherbeei_contig1402.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1402 1429..1967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1402.3.1

>prot_P-wetherbeei_contig1402.3.1 ID=prot_P-wetherbeei_contig1402.3.1|Name=mRNA_P-wetherbeei_contig1402.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
MQPRRRVPLRATCDRCSRLRKKCDSMKPWCSRCQRANSSCVYSPLRRPCR
ALGGTSQSPLL
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mRNA from alignment at P-wetherbeei_contig1402:1176..1967+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1402.3.1 ID=mRNA_P-wetherbeei_contig1402.3.1|Name=mRNA_P-wetherbeei_contig1402.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=792bp|location=Sequence derived from alignment at P-wetherbeei_contig1402:1176..1967+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGCTTCTCCACCCAACTGCCAGGCTGTTTAGGCAAGCCCTCCCCTCCT
CCTCCCCCCTTTCCTCACCTCCTTTTTCCTTCCCGGCCGATCTGGGGGGC
GATTGGTGGATTTGTTTTGAACCCGGGCGTTCTCAGACGCTTTGGTACTC
CACACATCTTGTTATAATGCTTCGGTGAAGGCATCAACATCTGGAGGATC
GGCTGAAAGACCCGCTCAACCCCGAGGGTTGGGGCCACCTCGAAATCTAA
AGGATGCAGCCACGACGCCGGGTCCCACTACGAGCGACATGCGACAGGTA
ATGGCTTTAGATTCTCTCGGCCGGTTTTCGCCAATTTCTCATTCTCATGG
CTAGTGGATAAAATGGAAAAGGAAAGAAAGGGTGTTGGACGACGGAGGGA
GCGAGAAGATCCCGCGAGTTTGCCAAAGATGCAAGCTCTTCCCTCTTCAC
CACATTGCCGAATTCCTGGCTTGGTACAATAACCTTGCTTACCGGTGAAC
GACTGAAGAAGTTTTTCTCCGCGGAAGATTGCTTCATCTAATTCAAACAG
CCGATCGACTTCTCCGGGCGCCCGTGTACAACCTGCGTACTATTAACACG
CATTCCTCCTTGATGATATCCCACTGTGTTTCCAACACGAGGACCTTCGG
CAGGTGCAGTCGCCTGCGCAAGAAGTGCGATAGCATGAAGCCGTGGTGTT
CGCGGTGCCAGCGGGCGAATTCCTCCTGCGTCTACTCGCCGCTCCGTCGC
CCCTGCCGGGCGCTGGGAGGGACCTCGCAGTCTCCGCTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1402:1176..1967+

>mRNA_P-wetherbeei_contig1402.3.1 ID=mRNA_P-wetherbeei_contig1402.3.1|Name=mRNA_P-wetherbeei_contig1402.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig1402:1176..1967+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCCACGACGCCGGGTCCCACTACGAGCGACATGCGACAGGTGCAG
TCGCCTGCGCAAGAAGTGCGATAGCATGAAGCCGTGGTGTTCGCGGTGCC
AGCGGGCGAATTCCTCCTGCGTCTACTCGCCGCTCCGTCGCCCCTGCCGG
GCGCTGGGAGGGACCTCGCAGTCTCCGCTGCTG
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