mRNA_P-wetherbeei_contig14015.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14015.1.1
Unique NamemRNA_P-wetherbeei_contig14015.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14015.1.1 vs. uniprot
Match: A0A835YU16_9STRA (DEAD box RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU16_9STRA)

HSP 1 Score: 326 bits (836), Expect = 5.210e-104
Identity = 163/219 (74.43%), Postives = 185/219 (84.47%), Query Frame = 1
Query:    1 QGALSLGGVGYVVLDEADRMLDLGFENDVREIVSWTSASRQTAMFSATWPREIRELAAEFLKMPVRVTVGDDELTANVRVSQTVEVVGERERDGRLLALLPEIHGSRTNRVLVFALYKREAERLEQTLARNGWKAVAVHGDKSQNERERALGKFRDGSCPLMIATDVAARGLDIPDVEHVVNYSFPLTIADYIHRVGRTGRAGKTGSSHTFFHAGDKVR 657
            +GA+ L GV Y+VLDEADRMLDLGFE DVR+I+  T+ +RQTAMFSATWPREIR LAAEFL+ PVRVTVGDD+LTAN RV+Q VEV+GERERD RLL LL ++HG+R NRVLVFALYK+EA RLE  L+R G+ AVAVHGDK Q +RERAL  FR  S PLMIATDVAARGLDIPDVE V+NYSFPL  + YIHR+GRTGRAGKTG S+TFFH GDK R
Sbjct:  343 EGAVDLSGVVYMVLDEADRMLDLGFEQDVRDIIGATARARQTAMFSATWPREIRALAAEFLREPVRVTVGDDDLTANARVAQHVEVIGERERDARLLELLEKVHGARDNRVLVFALYKKEAARLEALLSRRGYSAVAVHGDKGQADRERALAAFRSKSVPLMIATDVAARGLDIPDVEFVINYSFPLETSSYIHRIGRTGRAGKTGVSYTFFHQGDKAR 561          
BLAST of mRNA_P-wetherbeei_contig14015.1.1 vs. uniprot
Match: D8LEE8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE8_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 4.470e-97
Identity = 158/221 (71.49%), Postives = 179/221 (81.00%), Query Frame = 1
Query:    1 QGALSLGGVGYVVLDEADRMLDLGFENDVREIVSWTS--ASRQTAMFSATWPREIRELAAEFLKMPVRVTVGDDELTANVRVSQTVEVVGERERDGRLLALLPEIHGSRTNRVLVFALYKREAERLEQTLARNGWKAVAVHGDKSQNERERALGKFRDGSCPLMIATDVAARGLDIPDVEHVVNYSFPLTIADYIHRVGRTGRAGKTGSSHTFFHAGDKVR 657
            +GA  L  V  +VLDEADRMLDLGFE DVR+I+ + +  + RQTAMFSATWP+ IR+LAAEFL  PV+VTVG D+LTAN RV Q VEVV ERERDG+LL LL   H SR NRVLVFALYKREA RLEQ L RN + AVAVHGDK Q +RERALG+F+    PLM+ATDVAARGLDIPDVE+V+NYSFPLTI DYIHR+GRTGRAGK G SHT+FH GDK R
Sbjct:  306 EGACDLSKVTSLVLDEADRMLDLGFEQDVRDIIGYCAGPSKRQTAMFSATWPKSIRDLAAEFLADPVKVTVGADDLTANYRVEQHVEVVEERERDGKLLRLLATCHKSRKNRVLVFALYKREAARLEQFLQRNNFDAVAVHGDKGQADRERALGQFKSKERPLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKKGVSHTYFHQGDKAR 526          
BLAST of mRNA_P-wetherbeei_contig14015.1.1 vs. uniprot
Match: A0A7S2V5P3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P3_9STRA)

HSP 1 Score: 286 bits (731), Expect = 1.120e-90
Identity = 146/223 (65.47%), Postives = 177/223 (79.37%), Query Frame = 1
Query:    1 QGALSLGGVGYVVLDEADRMLDLGFENDVREIVSWT-SASRQTAMFSATWPREIRELAAEFLKM---PVRVTVGDDELTANVRVSQTVEVVGERERDGRLLALLPEIHGSRTNRVLVFALYKREAERLEQTLARNGWKAVAVHGDKSQNERERALGKFRDGSCPLMIATDVAARGLDIPDVEHVVNYSFPLTIADYIHRVGRTGRAGKTGSSHTFFHAGDKVR 657
            +G+LSLG VGY+VLDEADRMLDLGFE D+R I+  T +A+RQTAMFSATWP E+R+LA+EFL+     V+V VG ++L++N  V Q V+VV ER+RDG L  LL + H   TNRVLVFALYK+EA RLE  + R GWK  A+HGDKSQ +RE AL  FR    PL++ATDVAARGLDIPDVE+V+NYSFPLTI DY+HR+GRTGRAG+ G +HTFFHAGDK R
Sbjct:  161 EGSLSLGQVGYLVLDEADRMLDLGFEEDMRAIIGATPAATRQTAMFSATWPLEVRKLASEFLRGGEGTVKVVVGGEKLSSNKNVHQIVDVVEERQRDGLLRNLLTKYHPEGTNRVLVFALYKKEAARLEAMIQRAGWKVGAIHGDKSQRDREAALADFRACRVPLLVATDVAARGLDIPDVEYVINYSFPLTIEDYVHRIGRTGRAGQKGVAHTFFHAGDKAR 383          
BLAST of mRNA_P-wetherbeei_contig14015.1.1 vs. uniprot
Match: A0A7S2FZJ9_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FZJ9_9EUKA)

HSP 1 Score: 280 bits (716), Expect = 8.150e-89
Identity = 137/220 (62.27%), Postives = 171/220 (77.73%), Query Frame = 1
Query:    1 QGALSLGGVGYVVLDEADRMLDLGFENDVREIVSWTSASRQTAMFSATWPREIRELAAEFLKMPVRVTVGDDELTANVRVSQTVEVVGERERDGRLLALLPEIHGSRTNRVLVFALYKREAERLEQTLARNGWKAVAVHGDKSQNERERALGKFRDGSCPLMIATDVAARGLDIPDVEHVVNYSFPLTIADYIHRVGRTGRAGKTGSSHTFFHAGDKVRK 660
            +GA+SL G  Y+VLDEADRMLD+GFE DVR I+S TS +R+TAMF+ATWP  +R LAAEFL  PVRV VG ++L+AN+RV+QTVEV+ E  +  RL  LL + H SR NRVLVF LYK+EA R+EQ + R G+ A+ +HGD +Q  R +AL +F++GS PL++ATDVAARGLDIPDVE V+NY+FPLTI DYIHR+GRTGR GKTG SHT F    +  K
Sbjct:  138 EGAVSLSGTTYLVLDEADRMLDMGFEKDVRSIISSTSKARRTAMFTATWPDSVRTLAAEFLTSPVRVNVGSEDLSANIRVTQTVEVLDEARKPSRLPQLLQKYHSSRKNRVLVFCLYKKEAARVEQDIQRAGYSAIGIHGDMTQAARTQALQQFKEGSVPLLVATDVAARGLDIPDVEVVINYTFPLTIEDYIHRIGRTGRGGKTGISHTLFTGNPQFEK 357          
BLAST of mRNA_P-wetherbeei_contig14015.1.1 vs. uniprot
Match: A0A7S1UCS2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCS2_9STRA)

HSP 1 Score: 276 bits (705), Expect = 8.260e-89
Identity = 138/216 (63.89%), Postives = 172/216 (79.63%), Query Frame = 1
Query:   10 LSLGGVGYVVLDEADRMLDLGFENDVREIVS--WTSASRQTAMFSATWPREIRELAAEFLKMPVRVTVGDDELTANVRVSQTVEVVGERERDGRLLALLPEIHGSRTNRVLVFALYKREAERLEQTLARNGWKAVAVHGDKSQNERERALGKFRDGSCPLMIATDVAARGLDIPDVEHVVNYSFPLTIADYIHRVGRTGRAGKTGSSHTFFHAGDK 651
            L+LG V Y+VLDEADRMLD+GFE DV+ I++      +RQT MFSATWP+ IRELA+ FL  P++++VG D+LT+N RV QTVEV+GE +R+ RL  LL + H  R NRVLVFALYK+EA RLE+ L R+ ++  +VHGDK Q ER RA+ +FR  +CPL++ATDVAARGLDIPDVE V+NYSFPLTI DYIHR+GRTGRAGK+G SHT FH G+K
Sbjct:   20 LTLGAVEYLVLDEADRMLDMGFERDVKAIIANCMPPPARQTVMFSATWPQSIRELASTFLNSPIKISVGSDDLTSNHRVKQTVEVIGEFDREQRLRELLKKYHKGRNNRVLVFALYKKEAARLERMLQRD-FRCSSVHGDKPQTERSRAVDEFRANTCPLLVATDVAARGLDIPDVEVVINYSFPLTIEDYIHRIGRTGRAGKSGISHTLFHDGNK 234          
BLAST of mRNA_P-wetherbeei_contig14015.1.1 vs. uniprot
Match: A0A7S3XUU1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUU1_HETAK)

HSP 1 Score: 282 bits (721), Expect = 1.230e-87
Identity = 146/225 (64.89%), Postives = 166/225 (73.78%), Query Frame = 1
Query:    1 QGALSLGGVGYVVLDEADRMLDLGFENDVREIVSWTSA------SRQTAMFSATWPREIRELAAEFLKMPVRVTVGDDELTANVRVSQTVEVVGERERDGRLLALLPEIHGSRTNRVLVFALYKREAERLEQTLARNGWKAVAVHGDKSQNERERALGKFRDGSCPLMIATDVAARGLDIPDVEHVVNYSFPLTIADYIHRVGRTGRAGKTGSSHTFFHAGDKVR 657
            + A+ LG V ++VLDEADRMLDLGFE D+R I+    A       R+TAMFSATWPRE+RELAAEFL  PVRVT+G  +L AN RVSQ VEV+GERER  RL  LL   H  R NRV+VF LYK+E  RLE  L R GWK  A+HGDK Q  RE AL  FR    P++IATDVAARGLDIPDVE V+NYSFPLTI DY+HR+GRTGRAGK+G SHT FH GDK R
Sbjct:  292 ENAVDLGRVAHLVLDEADRMLDLGFEQDMRAIIGACPAPGAAAGGRRTAMFSATWPREVRELAAEFLDRPVRVTIGGSKLAANARVSQCVEVMGERERGARLQQLLERYHDGR-NRVIVFGLYKKECSRLEGDLRRAGWKVGAIHGDKGQGAREAALEDFRQQKVPILIATDVAARGLDIPDVEVVINYSFPLTIEDYVHRIGRTGRAGKSGVSHTLFHEGDKAR 515          
BLAST of mRNA_P-wetherbeei_contig14015.1.1 vs. uniprot
Match: H3G5S8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5S8_PHYRM)

HSP 1 Score: 275 bits (702), Expect = 1.280e-86
Identity = 131/215 (60.93%), Postives = 166/215 (77.21%), Query Frame = 1
Query:   13 SLGGVGYVVLDEADRMLDLGFENDVREIVSWTSASRQTAMFSATWPREIRELAAEFLKMPVRVTVGDDELTANVRVSQTVEVVGERERDGRLLALLPEIHGSRTNRVLVFALYKREAERLEQTLARNGWKAVAVHGDKSQNERERALGKFRDGSCPLMIATDVAARGLDIPDVEHVVNYSFPLTIADYIHRVGRTGRAGKTGSSHTFFHAGDKVR 657
            +L  V +VVLDEADRMLD GFE D+R I+  T   RQ AMFSATWP+ I++LA EFL  PV+VT+G DEL A+V V+Q VEV+ +R RD R  ALL + H SR NR+L+F LYK+EA+R+E+ L + GW  +A+HGD+SQ +R  A+ +F+ G  PL+IATDVAARGLDIP VE+V+NYSFPLTI DY+HR+GRTGR GK G++HTFF A DK R
Sbjct:  148 NLSKVTFVVLDEADRMLDEGFEKDIRSIIGSTHPERQIAMFSATWPQSIQKLAHEFLNNPVKVTIGSDELAASVNVTQIVEVIDDRARDARAHALLQKYHSSRKNRILLFVLYKKEADRVERMLHQRGWNCIAIHGDRSQQQRSEAVEQFKSGEVPLLIATDVAARGLDIPGVEYVINYSFPLTIEDYVHRIGRTGRGGKKGTAHTFFTANDKPR 362          
BLAST of mRNA_P-wetherbeei_contig14015.1.1 vs. uniprot
Match: A0A1D6HXH9_MAIZE (DEAD-box ATP-dependent RNA helicase 5 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6HXH9_MAIZE)

HSP 1 Score: 269 bits (687), Expect = 3.050e-86
Identity = 133/218 (61.01%), Postives = 167/218 (76.61%), Query Frame = 1
Query:    4 GALSLGGVGYVVLDEADRMLDLGFENDVREIVSWTSASRQTAMFSATWPREIRELAAEFLKM-PVRVTVGDDELTANVRVSQTVEVVGERERDGRLLALLPEIHGSRTNRVLVFALYKREAERLEQTLARNGWKAVAVHGDKSQNERERALGKFRDGSCPLMIATDVAARGLDIPDVEHVVNYSFPLTIADYIHRVGRTGRAGKTGSSHTFFHAGDKV 654
            G   L  V +VVLDEADRMLDLGFE +VR I+S TS+ RQ  MFSATWP  + +LA EF+   P++V +G ++L AN  V Q VEV+ +R RD RLLALL + H +++NRVLVF LYK+EA R+E  L R GWKAV+VHGDK+Q++R +AL  F++G CPLMIATDVA+RGLDIPDVE V+NYS+PLT  DY+HR+GRTGRAGK G +HTFF   +K 
Sbjct:    8 GVCCLNEVSFVVLDEADRMLDLGFEPEVRAILSQTSSVRQMVMFSATWPLAVHKLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRTRDSRLLALLDKYHQAQSNRVLVFVLYKKEAARVETMLQRRGWKAVSVHGDKAQHDRTKALSLFKEGKCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQANKA 225          
BLAST of mRNA_P-wetherbeei_contig14015.1.1 vs. uniprot
Match: A0A7R9U8F6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8F6_9STRA)

HSP 1 Score: 276 bits (707), Expect = 7.570e-86
Identity = 144/218 (66.06%), Postives = 166/218 (76.15%), Query Frame = 1
Query:    4 GALSLGGVGYVVLDEADRMLDLGFENDVREIVS--WTSASRQTAMFSATWPREIRELAAEFLKMPVRVTVGDDELTANVRVSQTVEVVGERERDGRLLALLPEIHGSRTNRVLVFALYKREAERLEQTLARNGWKAVAVHGDKSQNERERALGKFRDGSCPLMIATDVAARGLDIPDVEHVVNYSFPLTIADYIHRVGRTGRAGKTGSSHTFFHAGDK 651
            G L L  V Y+VLDEADRMLDLGFE DV+ I++       RQT MFSATWP  IR+LAA FL  PV++TVG DELT+N RV QTVEV+ ER+R  RL  LL   H  + NR+LVFALYK+EA RLE  L R  ++  +VHGDKSQ ER RA+  FR+  CPL+IATDVAARGLDIPDVE V+NYSFPLTI DYIHR+GRTGRAGKTG SHTFFH G+K
Sbjct:  275 GGLVLDAVEYLVLDEADRMLDLGFERDVKAIIANCMPPPERQTVMFSATWPESIRQLAATFLNNPVKITVGTDELTSNHRVQQTVEVIAERDRFQRLRELLNRYHRKKNNRILVFALYKKEAARLESMLQRE-FRCNSVHGDKSQPERSRAVDDFRNKDCPLLIATDVAARGLDIPDVEVVINYSFPLTIEDYIHRIGRTGRAGKTGVSHTFFHDGNK 491          
BLAST of mRNA_P-wetherbeei_contig14015.1.1 vs. uniprot
Match: A0A2P6U3S5_CHLSO (DEAD-box ATP-dependent RNA helicase 5 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U3S5_CHLSO)

HSP 1 Score: 278 bits (710), Expect = 7.970e-86
Identity = 140/219 (63.93%), Postives = 168/219 (76.71%), Query Frame = 1
Query:    4 GALSLGGVGYVVLDEADRMLDLGFENDVREIVSWTSASRQTAMFSATWPREIRELAAEFLKMPVRVTVGDDELTANVRVSQTVEVVGERERDGRLLALLPEIHGSRTNRVLVFALYKREAERLEQTLARNGWKAVAVHGDKSQNERERALGKFRDGSCPLMIATDVAARGLDIPDVEHVVNYSFPLTIADYIHRVGRTGRAGKTGSSHTFF-HAGDKVR 657
            GA  L  V ++VLDEADRMLDLGFE  +R I   T A RQT MFSATWP  +R+LAA+FL  PV+VT+G  +L A+  V+Q VEV+ +R RDGRL  LL   H SRTNRV++F LYK+EA R+EQTL R GWKAVA+HGD SQ +R  A+ KF+ G  PL++ATDVAARGLDIPDVE V+NYSFPLT  DY+HR+GRTGRAGKTG++HTFF  A DK R
Sbjct:  314 GACKLDEVSFLVLDEADRMLDLGFEPHIRAIAGKTRADRQTLMFSATWPTTVRKLAADFLCHPVKVTIGSQDLAASHSVTQVVEVIEDRARDGRLHDLLQRYHSSRTNRVIIFVLYKKEAVRVEQTLQRKGWKAVAIHGDISQVQRTAAVDKFKSGQVPLLVATDVAARGLDIPDVEVVLNYSFPLTTEDYVHRIGRTGRAGKTGTAHTFFVGANDKPR 532          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14015.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YU16_9STRA5.210e-10474.43DEAD box RNA helicase n=1 Tax=Tribonema minus TaxI... [more]
D8LEE8_ECTSI4.470e-9771.49DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S2V5P3_9STRA1.120e-9065.47Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2FZJ9_9EUKA8.150e-8962.27Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S1UCS2_9STRA8.260e-8963.89Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3XUU1_HETAK1.230e-8764.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
H3G5S8_PHYRM1.280e-8660.93Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A1D6HXH9_MAIZE3.050e-8661.01DEAD-box ATP-dependent RNA helicase 5 n=1 Tax=Zea ... [more]
A0A7R9U8F6_9STRA7.570e-8666.06Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A2P6U3S5_CHLSO7.970e-8663.93DEAD-box ATP-dependent RNA helicase 5 n=1 Tax=Chlo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14015contigP-wetherbeei_contig14015:142..1361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEE8
Preferred nameDBP3
PFAMsDEAD,Helicase_C
Model size928
Max annot lvl2759|Eukaryota
KEGG koko:K07466,ko:K14811
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000166,GO:0000460,GO:0000463,GO:0000464,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030554,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042255,GO:0042273,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0070035,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1990904
Exons2
Evalue7.88e-92
EggNOG OGsCOG0513@1|root,KOG0331@2759|Eukaryota
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-00_002030.1
EC3.6.4.13
Descriptionhelicase activity
Cds size741
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03009,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186005.6265984-UTR-P-wetherbeei_contig14015:141..2711683186005.6265984-UTR-P-wetherbeei_contig14015:141..271Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14015 142..271 -
1683186005.650297-UTR-P-wetherbeei_contig14015:1304..13611683186005.650297-UTR-P-wetherbeei_contig14015:1304..1361Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14015 1305..1361 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186005.6357698-CDS-P-wetherbeei_contig14015:271..5161683186005.6357698-CDS-P-wetherbeei_contig14015:271..516Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14015 272..516 -
1683186005.6430912-CDS-P-wetherbeei_contig14015:808..13041683186005.6430912-CDS-P-wetherbeei_contig14015:808..1304Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14015 809..1304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14015.1.1prot_P-wetherbeei_contig14015.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14015 272..1304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14015.1.1

>prot_P-wetherbeei_contig14015.1.1 ID=prot_P-wetherbeei_contig14015.1.1|Name=mRNA_P-wetherbeei_contig14015.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=247bp
MLDLGFENDVREIVSWTSASRQTAMFSATWPREIRELAAEFLKMPVRVTV
GDDELTANVRVSQTVEVVGERERDGRLLALLPEIHGSRTNRVLVFALYKR
EAERLEQTLARNGWKAVAVHGDKSQNERERALGKFRDGSCPLMIATDVAA
RGLDIPDVEHVVNYSFPLTIADYIHRVGRTGRAGKTGSSHTFFHAGDKVR
KDRRDLVRFQRCHQYTFHFGFISGSLSAVLFWPAALGSWWDRGLAV*
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mRNA from alignment at P-wetherbeei_contig14015:142..1361-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14015.1.1 ID=mRNA_P-wetherbeei_contig14015.1.1|Name=mRNA_P-wetherbeei_contig14015.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1220bp|location=Sequence derived from alignment at P-wetherbeei_contig14015:142..1361- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGCGCGCTGTCACTGGGCGGCGTGGGCTATGTGGTGCTGGATGAGGC CGACCGCATGCTGGACCTCGGCTTCGAGAACGACGTCCGCGAGATCGTCT CCTGGACGTCCGCCTCCCGCCAGACGGCCATGTTCTCCGCCACGTGGCCG CGCGAGATCCGGGAGCTGGCCGCCGAGTTCCTGAAGATGCCTGTCCGGGT GACGGTCGGCGACGACGAGCTCACCGCAAACGTTCGCGTCTCCCAGACCG TCGAGGTGGTCGGGGAGCGGGAGCGGGACGGGCGGCTGCTGGCGCTGCTG CCGGAAATCCACGGATCGCGCACCAACCGCGTGCTGGTCTTCGCATTGTA CAAGCGCGAGGCGGAGCGGCTGGAGCAGACGCTGGCACGCAACGGCTGGA AGGCCGTGGCCGTGCATGGGGACAAGTCCCAGAACGAGCGGGAACGGGCG CTCGGAAAGTTCCGGGACGGGAGCTGCCCGCTGATGATCGCGACGGACGT GGCGGCGCGCGGCCTCGACATCCCTGACGTCGAACACGTCGTCAACTACT CATGTGAGAGATGCTTAGAAAAAGAGAAAGAATTGCTGCAGTTTAAAGCA GTTTAAAGGTTTCGAACTCGGCGCTAGAAAAATAAAATCCGTGTCCGTTC CCGTGGAGCTTGTAGCCAGCTATCTGGCAGGGGCGCGATGCCGAGAAGAG CTCTCTAATTAATAGCTACATGGGGAGGAATGACATGTTTCCTTTCTGAT TTTTTGGGACATGTTCCTCAAGCTAGGTGATCGAGTTCTCTGGAAGTTAA CCCCTTTCTCGAACTCATTGTGCCCCTTTTTATCGAAACCATCAGTCCCT CTCACCATCGCGGACTACATTCACCGTGTCGGCCGAACCGGCCGCGCCGG CAAGACGGGCAGCTCGCATACCTTCTTCCATGCGGGAGATAAGGTGAGGA AAGATCGGCGAGATCTGGTCAGATTTCAGCGGTGTCATCAATATACGTTT CATTTTGGTTTTATAAGTGGCTCATTATCGGCCGTCTTGTTTTGGCCGGC AGCCCTTGGTTCTTGGTGGGATAGAGGGTTAGCGGTGTGAATGTTGAATG CGAAAACCGTGTCTCTTTTTTAGCAGAGCCGATTATGGACGCTTGGCTGT CCCTAACAGCGGCGGCTGCGAAACCCGAGCAACGTTACGTGAAGATTCTG TGTTTCCCTCTGCTGACGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14015:142..1361-

>mRNA_P-wetherbeei_contig14015.1.1 ID=mRNA_P-wetherbeei_contig14015.1.1|Name=mRNA_P-wetherbeei_contig14015.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=741bp|location=Sequence derived from alignment at P-wetherbeei_contig14015:142..1361- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGACCTCGGCTTCGAGAACGACGTCCGCGAGATCGTCTCCTGGAC
GTCCGCCTCCCGCCAGACGGCCATGTTCTCCGCCACGTGGCCGCGCGAGA
TCCGGGAGCTGGCCGCCGAGTTCCTGAAGATGCCTGTCCGGGTGACGGTC
GGCGACGACGAGCTCACCGCAAACGTTCGCGTCTCCCAGACCGTCGAGGT
GGTCGGGGAGCGGGAGCGGGACGGGCGGCTGCTGGCGCTGCTGCCGGAAA
TCCACGGATCGCGCACCAACCGCGTGCTGGTCTTCGCATTGTACAAGCGC
GAGGCGGAGCGGCTGGAGCAGACGCTGGCACGCAACGGCTGGAAGGCCGT
GGCCGTGCATGGGGACAAGTCCCAGAACGAGCGGGAACGGGCGCTCGGAA
AGTTCCGGGACGGGAGCTGCCCGCTGATGATCGCGACGGACGTGGCGGCG
CGCGGCCTCGACATCCCTGACGTCGAACACGTCGTCAACTACTCATTCCC
TCTCACCATCGCGGACTACATTCACCGTGTCGGCCGAACCGGCCGCGCCG
GCAAGACGGGCAGCTCGCATACCTTCTTCCATGCGGGAGATAAGGTGAGG
AAAGATCGGCGAGATCTGGTCAGATTTCAGCGGTGTCATCAATATACGTT
TCATTTTGGTTTTATAAGTGGCTCATTATCGGCCGTCTTGTTTTGGCCGG
CAGCCCTTGGTTCTTGGTGGGATAGAGGGTTAGCGGTGTGA
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