mRNA_P-wetherbeei_contig1401.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1401.2.1
Unique NamemRNA_P-wetherbeei_contig1401.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1401.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1401contigP-wetherbeei_contig1401:3474..5324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1095
Hectar predicted targeting categoryother localisation
Exons3
Cds size690
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186005.425085-CDS-P-wetherbeei_contig1401:3473..36471683186005.425085-CDS-P-wetherbeei_contig1401:3473..3647Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1401 3474..3647 -
1683186005.4328327-CDS-P-wetherbeei_contig1401:4011..41591683186005.4328327-CDS-P-wetherbeei_contig1401:4011..4159Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1401 4012..4159 -
1683186005.440743-CDS-P-wetherbeei_contig1401:4553..49211683186005.440743-CDS-P-wetherbeei_contig1401:4553..4921Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1401 4554..4921 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186005.4499068-UTR-P-wetherbeei_contig1401:4921..53241683186005.4499068-UTR-P-wetherbeei_contig1401:4921..5324Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1401 4922..5324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1401.2.1prot_P-wetherbeei_contig1401.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1401 3474..4921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1401.2.1

>prot_P-wetherbeei_contig1401.2.1 ID=prot_P-wetherbeei_contig1401.2.1|Name=mRNA_P-wetherbeei_contig1401.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=230bp
MAADECAAAATTDSDTRSRSAESRTRNGMMRPPVKKMEEVEGKGEGSYAT
GFPPTPTGPDSCFIATIHADDGGSTCSSHSDGSGDRRRTWESALREVGIV
VREGWTDDGEWDGVERCPVRCRRFVEASFERSNATAYLALVPVDDDEVVG
ARILAHIPGDGGIRSSLERQGKLRANMQLTRMNDHPVEATAFSDILTLLK
WGPSPGAPLRLRFEERLPQPLTPSLVPDGH
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mRNA from alignment at P-wetherbeei_contig1401:3474..5324-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1401.2.1 ID=mRNA_P-wetherbeei_contig1401.2.1|Name=mRNA_P-wetherbeei_contig1401.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1851bp|location=Sequence derived from alignment at P-wetherbeei_contig1401:3474..5324- (Phaeothamnion wetherbeei SAG_119_79)
GACGAAACGGCCTCGTGCACGCGGGAAAGGAGCTACCTTCCCTTTTTGAA
GGAGATTGAGCTTCTCTTCTGCTTTTCGAGGCTGATACTGAAGGAGCGGA
GGTGTCCACCCAAGAAAGAGCAGGCTGAACTTCGGTTGCCTTCTTTTCCG
ACCTCTCTAACTTGGGAGGCTAGACACTGAATGGAGTCGTAGCTGTTCAT
CTACGGCTTGCCTTTTCCAACCTTTCCAACTTCTTCGAGCTTGCTTTCCG
GCATCCTTTCGAGGGTGCGCGGGAGCACTTCTTGCGAAAATCTCTTCGTT
GCGAGGACCACGCCGGGGCAGCAAATTACTGAAAGTAGGCGGCGGAGCTA
CAGGCTCTTCCAAATTGGGCAGAAACTATCGTCGGAGGCGCTCCACGGCC
CCAATGGCAGCCGACGAATGCGCCGCTGCTGCGACGACGGACAGCGACAC
ACGCAGCCGGAGCGCCGAGAGCCGAACGCGGAACGGCATGATGCGACCAC
CCGTCAAGAAGATGGAAGAAGTTGAGGGGAAGGGCGAAGGCAGCTACGCA
ACAGGCTTTCCGCCCACTCCTACGGGCCCCGACAGCTGCTTCATTGCGAC
GATACATGCGGACGACGGGGGAAGCACATGCAGCTCCCACAGCGACGGGA
GCGGCGACCGGAGACGCACGTGGGAGTCAGCGCTCCGAGAAGTTGGCATC
GTTGTGAGGGAGGGCTGGACAGACGACGGCGAATGGGATGGCGTCGAGAG
GTGCCCAGTGCGTTGCCGGAGGTGAGAGGTGCTGGGCTGTTCGGGCTGGC
GGACGGCGAGCTGTCGTGCTTTTGCCGGCAGTGATGTGCCTTTGGCGGGT
CCCGTTCCGTGTTCAATTTTTCGCTCGCTTCTCCGGGTCGCAAGTACAGG
TCGGTAGGGAGGGAGTCATGGCAAGAAATATGTGTGTGGATGGATTGCCT
CCTCTTTCTAGCAGGCAGAGCGTCACCTTCAATGGAGAGCAACGATCCCG
ACGCCGTAACGCACGAGGCCGGTGAAAAACAAAGAGGATGGTCGCCTCAT
CCTGCCTTTTATTCTTGCCATTCTTCCGTGTTTTACGCTTTCTCTATCCT
CCCTTCTTCTTTTCCCGCCGCTTCCTGTCCTGCCTACCGACTGGCGAAAA
CCCCTTCGAAAAAAGGTTTGTGGAGGCGTCGTTTGAGCGCAGCAATGCGA
CGGCCTACCTGGCGCTTGTGCCGGTGGATGACGACGAGGTGGTCGGAGCG
CGCATCCTCGCCCACATCCCCGGTGACGGCGGCATCCGCAGCTCCCTCGA
GCGCCAGGGCAAGGTGCGCGCGGAAGGGGGAAAAAACGGGCAGAATTAGG
GCCGGCCAAGAGGCCGGAAAGAGGAAGAGAAAGAGAGAGAAGGCGCGAGT
ATCTGGAGTTCTTGCCGCACAACGGCGGCCGCCGCGTTTGCTTCGTCTTC
TTGTGGCTTTTTTGTGCCGCGTGGGCCGCCTGGAATGCGACCCCATCAGT
CTTGCAATGATCTTGAAGCGACAGATCTCTGCACCGAAGTGCGGGCACCA
ACCATCGCCGTAGCGACGCCTTGCTTCTCTTCCGCTCGCTCTCACGGTCC
GCACGCCCTTGCCCCTTACTTCGTCGTCGGCACGGTTTCTCTTTTCCTCT
TCGTCTTCTTGTTCCGTCCGCTGGCAGCTCCGCGCGAACATGCAGCTGAC
GCGCATGAACGACCACCCCGTCGAGGCGACCGCCTTCTCCGACATCCTTA
CGCTCCTCAAGTGGGGACCGTCTCCAGGCGCCCCGCTGCGGCTGCGCTTC
GAGGAAAGGCTGCCACAGCCGCTGACACCGTCGCTGGTGCCCGATGGCCA
C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1401:3474..5324-

>mRNA_P-wetherbeei_contig1401.2.1 ID=mRNA_P-wetherbeei_contig1401.2.1|Name=mRNA_P-wetherbeei_contig1401.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=690bp|location=Sequence derived from alignment at P-wetherbeei_contig1401:3474..5324- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGCCGACGAATGCGCCGCTGCTGCGACGACGGACAGCGACACACG
CAGCCGGAGCGCCGAGAGCCGAACGCGGAACGGCATGATGCGACCACCCG
TCAAGAAGATGGAAGAAGTTGAGGGGAAGGGCGAAGGCAGCTACGCAACA
GGCTTTCCGCCCACTCCTACGGGCCCCGACAGCTGCTTCATTGCGACGAT
ACATGCGGACGACGGGGGAAGCACATGCAGCTCCCACAGCGACGGGAGCG
GCGACCGGAGACGCACGTGGGAGTCAGCGCTCCGAGAAGTTGGCATCGTT
GTGAGGGAGGGCTGGACAGACGACGGCGAATGGGATGGCGTCGAGAGGTG
CCCAGTGCGTTGCCGGAGGTTTGTGGAGGCGTCGTTTGAGCGCAGCAATG
CGACGGCCTACCTGGCGCTTGTGCCGGTGGATGACGACGAGGTGGTCGGA
GCGCGCATCCTCGCCCACATCCCCGGTGACGGCGGCATCCGCAGCTCCCT
CGAGCGCCAGGGCAAGCTCCGCGCGAACATGCAGCTGACGCGCATGAACG
ACCACCCCGTCGAGGCGACCGCCTTCTCCGACATCCTTACGCTCCTCAAG
TGGGGACCGTCTCCAGGCGCCCCGCTGCGGCTGCGCTTCGAGGAAAGGCT
GCCACAGCCGCTGACACCGTCGCTGGTGCCCGATGGCCAC
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