mRNA_P-wetherbeei_contig1400.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1400.1.1
Unique NamemRNA_P-wetherbeei_contig1400.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1400.1.1 vs. uniprot
Match: A0A329SW12_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SW12_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.730e-21
Identity = 49/118 (41.53%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 VTISTTGLGDIEPVSYAAKVFSLFYLPIATL----GLGKVLSEFLSAARQRRIFPFRVDTTRFLNMDSNHDGRVDKLEYLCELLVTQGKCEKGDIDAILTKFDILDSNLTGYLTRSEV 342
            VTI+T G GD+ P S +A+VF++FYLP+A +    G+G +L+E LSA   R +   ++     L+MD++ DG+V +LEYLC +LV   K ++ DID I+ +F  LD + +G L R ++
Sbjct:  273 VTITTVGFGDLSPKSQSARVFAIFYLPLAVVTVAHGIGSILNE-LSA---RSVMKTKISMKELLDMDADGDGKVSQLEYLCYMLVKLNKADQDDIDGIIAQFHKLDRDGSGELDRDDL 386          
BLAST of mRNA_P-wetherbeei_contig1400.1.1 vs. uniprot
Match: H3GTB3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTB3_PHYRM)

HSP 1 Score: 96.3 bits (238), Expect = 8.890e-21
Identity = 48/118 (40.68%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 VTISTTGLGDIEPVSYAAKVFSLFYLPIATL----GLGKVLSEFLSAARQRRIFPFRVDTTRFLNMDSNHDGRVDKLEYLCELLVTQGKCEKGDIDAILTKFDILDSNLTGYLTRSEV 342
            +TI+T G GD+ P S  A+VF++FYLP+A +    G+G +L+E LSA   R +   ++     L+MD++ DG+V ++EYLC +LV   K ++ DID I+T+F  LD + +G L R ++
Sbjct:  915 ITITTVGFGDLSPKSQGARVFAIFYLPLAVVTVAHGIGSILNE-LSA---RSVMKTKISMKELLDMDADGDGKVSQMEYLCYMLVKLNKADQDDIDGIITQFHKLDRDGSGELDRDDL 1028          
BLAST of mRNA_P-wetherbeei_contig1400.1.1 vs. uniprot
Match: A0A662XUN9_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUN9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.210e-20
Identity = 48/118 (40.68%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 VTISTTGLGDIEPVSYAAKVFSLFYLPIATL----GLGKVLSEFLSAARQRRIFPFRVDTTRFLNMDSNHDGRVDKLEYLCELLVTQGKCEKGDIDAILTKFDILDSNLTGYLTRSEV 342
            +TI+T G GD+ P S AA++F++FYLP+A +    G+G +L+E LSA   R +   ++     L MD++ DG+V +LEY+C +LV   K ++ DID I+T+F  LD + +G L R ++
Sbjct:  913 ITITTVGFGDLSPKSEAARIFAIFYLPLAVVTVAHGIGSILNE-LSA---RSVMKTKISMKELLAMDTDGDGKVSQLEYMCYMLVKLNKADQDDIDGIITQFHKLDRDGSGELDRDDL 1026          
BLAST of mRNA_P-wetherbeei_contig1400.1.1 vs. uniprot
Match: G4ZLG8_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4ZLG8_PHYSP)

HSP 1 Score: 94.4 bits (233), Expect = 4.210e-20
Identity = 46/118 (38.98%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 VTISTTGLGDIEPVSYAAKVFSLFYLPIATL----GLGKVLSEFLSAARQRRIFPFRVDTTRFLNMDSNHDGRVDKLEYLCELLVTQGKCEKGDIDAILTKFDILDSNLTGYLTRSEV 342
            +TI+T G GD+ P S +A+++++FYLP+A +    G+G +L+E LSA   R +   ++     L+MD++ DG+V +LEYLC +LV   K ++ DID I+ +F  LD + +G L R ++
Sbjct:  956 ITITTVGFGDLSPTSKSARIYAIFYLPLAVVTVAHGIGSILNE-LSA---RSVMKTKISMKELLDMDADGDGKVSQLEYLCYMLVKLNKADQDDIDGIIAQFHKLDRDGSGELDRDDL 1069          
BLAST of mRNA_P-wetherbeei_contig1400.1.1 vs. uniprot
Match: A0A5D6XXA4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXA4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.830e-20
Identity = 46/118 (38.98%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    1 VTISTTGLGDIEPVSYAAKVFSLFYLPIATL----GLGKVLSEFLSAARQRRIFPFRVDTTRFLNMDSNHDGRVDKLEYLCELLVTQGKCEKGDIDAILTKFDILDSNLTGYLTRSEV 342
            +TI+T G GD  P S AA++F++FYLP+A +    G+G +  EF     +R +   ++     L MDS+ DG+V KLEYL  +LV   K ++ DID IL +F+ LD + +G L ++++
Sbjct:  254 ITITTVGFGDRSPTSEAARIFAIFYLPLAVVSVAHGIGSIAEEF----SRRSVMKSKISMKELLEMDSDGDGKVSKLEYLSYMLVKLSKADQDDIDGILAQFNKLDRDGSGELDKADL 367          
BLAST of mRNA_P-wetherbeei_contig1400.1.1 vs. uniprot
Match: A0A662WXW0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXW0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 5.870e-20
Identity = 47/118 (39.83%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    1 VTISTTGLGDIEPVSYAAKVFSLFYLPIATL----GLGKVLSEFLSAARQRRIFPFRVDTTRFLNMDSNHDGRVDKLEYLCELLVTQGKCEKGDIDAILTKFDILDSNLTGYLTRSEV 342
            +TI+T G GD+ P S AA++F++FYLP+A +    G+G +L+E LSA   R +   ++     L MD++ DG+V +LEY+C +LV   K ++ DID I+ +F  LD + +G L R ++
Sbjct: 1619 ITITTVGFGDLSPKSEAARIFAIFYLPLAVVTVAHGIGSILNE-LSA---RSVMKTKISMKELLAMDTDGDGKVSQLEYMCYMLVKLNKADQDDIDGIIAQFHKLDRDGSGELDRDDL 1732          
BLAST of mRNA_P-wetherbeei_contig1400.1.1 vs. uniprot
Match: D0N6H5_PHYIT (Voltage-gated Ion Channel (VIC) Superfamily n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0N6H5_PHYIT)

HSP 1 Score: 92.4 bits (228), Expect = 6.290e-20
Identity = 46/118 (38.98%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 VTISTTGLGDIEPVSYAAKVFSLFYLPIATL----GLGKVLSEFLSAARQRRIFPFRVDTTRFLNMDSNHDGRVDKLEYLCELLVTQGKCEKGDIDAILTKFDILDSNLTGYLTRSEV 342
            +TI+T G GD+ P S +A++F++FYLP+A +    G+G +++E LSA   R +   ++     L+MD++ DG+V +LEYLC +LV   K ++ DI  I+T+F  LD + +G L R ++
Sbjct:  215 ITITTVGFGDLSPKSESARIFAIFYLPLAVVTVAHGIGSIVNE-LSA---RSVMKTKISMKELLDMDTDGDGKVSQLEYLCYMLVKLNKVDQDDIGGIITQFHKLDRDGSGELDRDDL 328          
BLAST of mRNA_P-wetherbeei_contig1400.1.1 vs. uniprot
Match: W2MW69_PHYPR (Uncharacterized protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2MW69_PHYPR)

HSP 1 Score: 92.8 bits (229), Expect = 7.580e-20
Identity = 40/114 (35.09%), Postives = 71/114 (62.28%), Query Frame = 1
Query:    1 VTISTTGLGDIEPVSYAAKVFSLFYLPIATLGLGKVLSEFLSAARQRRIFPFRVDTTRFLNMDSNHDGRVDKLEYLCELLVTQGKCEKGDIDAILTKFDILDSNLTGYLTRSEV 342
            +TI+T G GD+ P S +A++F++FYLP+A + +   +   L+    R +   ++     L+MD++ DG+V +LEYLC +LV   K ++ D+D I+ +F  LD + +G L R ++
Sbjct:  271 ITITTIGFGDLSPKSESARIFAIFYLPLAVVTVAHGIGSILNEISARSVMKTKISMKELLDMDADGDGKVSQLEYLCYMLVKLNKVDQDDLDGIIAQFHKLDRDGSGELDRDDL 384          
BLAST of mRNA_P-wetherbeei_contig1400.1.1 vs. uniprot
Match: A0A6A3XLK5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XLK5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.030e-19
Identity = 45/118 (38.14%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    1 VTISTTGLGDIEPVSYAAKVFSLFYLPIATL----GLGKVLSEFLSAARQRRIFPFRVDTTRFLNMDSNHDGRVDKLEYLCELLVTQGKCEKGDIDAILTKFDILDSNLTGYLTRSEV 342
            +TI+T G GD+ P S +A+++++FYLP+A +    G+G +L+E LSA   R +   ++     L+MD++ DG+V +LEYLC +LV   K ++ DID I+ +F  LD + +G L   ++
Sbjct:  269 ITITTVGFGDLSPTSKSARIYAIFYLPLAVVTVAHGIGSILNE-LSA---RSVMKTKISMKELLDMDADGDGKVSQLEYLCYMLVKLNKADQDDIDGIIAQFHKLDRDGSGELDHDDL 382          
BLAST of mRNA_P-wetherbeei_contig1400.1.1 vs. uniprot
Match: A0A0W8CIM0_PHYNI (Copine-4 n=2 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CIM0_PHYNI)

HSP 1 Score: 92.8 bits (229), Expect = 1.460e-19
Identity = 40/114 (35.09%), Postives = 71/114 (62.28%), Query Frame = 1
Query:    1 VTISTTGLGDIEPVSYAAKVFSLFYLPIATLGLGKVLSEFLSAARQRRIFPFRVDTTRFLNMDSNHDGRVDKLEYLCELLVTQGKCEKGDIDAILTKFDILDSNLTGYLTRSEV 342
            +TI+T G GD+ P S +A++F++FYLP+A + +   +   L+    R +   ++     L+MD++ DG+V +LEYLC +LV   K ++ D+D I+ +F  LD + +G L R ++
Sbjct: 1018 ITITTIGFGDLSPKSESARIFAIFYLPLAVVTVAHGIGSILNEISARSVMKTKISMKELLDMDADGDGKVSQLEYLCYMLVKLNKVDQDDLDGIIAQFHKLDRDGSGELDRDDL 1131          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1400.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A329SW12_9STRA5.730e-2141.53Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
H3GTB3_PHYRM8.890e-2140.68Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A662XUN9_9STRA1.210e-2040.68Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
G4ZLG8_PHYSP4.210e-2038.98Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A5D6XXA4_9STRA4.830e-2038.98Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A662WXW0_9STRA5.870e-2039.83Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
D0N6H5_PHYIT6.290e-2038.98Voltage-gated Ion Channel (VIC) Superfamily n=3 Ta... [more]
W2MW69_PHYPR7.580e-2035.09Uncharacterized protein n=7 Tax=Phytophthora paras... [more]
A0A6A3XLK5_9STRA1.030e-1938.14Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A0W8CIM0_PHYNI1.460e-1935.09Copine-4 n=2 Tax=Phytophthora nicotianae TaxID=479... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1400contigP-wetherbeei_contig1400:230..1216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog164328.Phyra80350
PFAMsC2,Copine,Ion_trans_2
Model size354
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.46e-21
EggNOG OGsKOG1327@1|root,KOG1418@1|root,KOG1327@2759|Eukaryota,KOG1418@2759|Eukaryota,3QBUD@4776|Peronosporales
Ec32 ortholog descriptionCalcium-activated outward-rectifying potassium channel, putative
Ec32 orthologEc-15_003460.1
DescriptionCopine
Cds size354
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186005.071247-CDS-P-wetherbeei_contig1400:229..3341683186005.071247-CDS-P-wetherbeei_contig1400:229..334Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1400 230..334 -
1683186005.0808883-CDS-P-wetherbeei_contig1400:491..5441683186005.0808883-CDS-P-wetherbeei_contig1400:491..544Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1400 492..544 -
1683186005.089229-CDS-P-wetherbeei_contig1400:771..8091683186005.089229-CDS-P-wetherbeei_contig1400:771..809Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1400 772..809 -
1683186005.0978968-CDS-P-wetherbeei_contig1400:1058..12161683186005.0978968-CDS-P-wetherbeei_contig1400:1058..1216Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1400 1059..1216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1400.1.1prot_P-wetherbeei_contig1400.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1400 230..1216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1400.1.1

>prot_P-wetherbeei_contig1400.1.1 ID=prot_P-wetherbeei_contig1400.1.1|Name=mRNA_P-wetherbeei_contig1400.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
VTISTTGLGDIEPVSYAAKVFSLFYLPIATLGLGKVLSEFLSAARQRRIF
PFRVDTTRFLNMDSNHDGRVDKLEYLCELLVTQGKCEKGDIDAILTKFDI
LDSNLTGYLTRSEVGAI*
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mRNA from alignment at P-wetherbeei_contig1400:230..1216-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1400.1.1 ID=mRNA_P-wetherbeei_contig1400.1.1|Name=mRNA_P-wetherbeei_contig1400.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=987bp|location=Sequence derived from alignment at P-wetherbeei_contig1400:230..1216- (Phaeothamnion wetherbeei SAG_119_79)
GTGACCATATCAACGACGGGGCTGGGCGATATTGAGCCGGTTTCGTACGC TGCGAAGGTGTTCTCCCTCTTCTACCTCCCTATTGCCACGCTCGGACTCG GCAAGGTCCTCAGTGAGTTTCTTTCTGCGGCCCGGCAACGCCGGATTTTT CCCTTTCGGTAATCAGAAGCCTCAGACTGCCCGTTCAATGTTGGGTTGTA CGCTGGAGTGCTTAGAGTATGGCAGCAACATACAATCCATGTGCACTTCA CTGCTTATCTGTCGTTGCAAGTAATGGCCAAACCTAGTCAGTTTTGGTAT TGGTTGGACCCGTCCTTTTCTTGATCGTTTCCGTACGCAGGCGACTACGC GGACATGAGGACGCAGGCCCGCGCGCATGAGATGCAGCGGCGCATCCTTG ATGCAAGAGTCGACACGACGCGGTTCTTGAACATGGACAGTAACCGTAAG TCGGTTTACTGGTGGAGGGTTATGTTTTGGAAACATTTAGAGCACCCGGC AAACCACGAAGAATCAGGCCTTGAAAACAACGGGAAGAGCTTTCTGCATT CAAAATGCCCTGACTCGTAGCAAAAGGAAGGAACGGGCGCATTCTTATAA TCGCCCTTCACTCTCATCGCATCATGTTGCCTGCCATTTACTCCTCCCTG AACCATTGATCCTGCATGGCAGACGACGGTCGCGTCGACAAGCTGGAGTA CCTCTGCGAGCTGTTGGTGACCCAGGTGATTAACGTCTCTTAGAATATAA AGCCGGCGCCTGCCGCCCTCGCTGTCGCCACCACTGGAACTGCCACCAGC ACCGTTCGCTGGCGCCGGCCGCCGCAGCTCCAACCCGCATCGCGCCGCCA TTTCTGCTCCAATCCCTCCTTCTCCCTCTCAGGGCAAGTGCGAGAAAGGC GATATTGACGCCATTCTGACCAAGTTCGACATTCTGGACTCGAACCTCAC CGGATATCTGACCCGATCGGAGGTTGGAGCCATCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1400:230..1216-

>mRNA_P-wetherbeei_contig1400.1.1 ID=mRNA_P-wetherbeei_contig1400.1.1|Name=mRNA_P-wetherbeei_contig1400.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig1400:230..1216- (Phaeothamnion wetherbeei SAG_119_79)
GTGACCATATCAACGACGGGGCTGGGCGATATTGAGCCGGTTTCGTACGC
TGCGAAGGTGTTCTCCCTCTTCTACCTCCCTATTGCCACGCTCGGACTCG
GCAAGGTCCTCAGTGAGTTTCTTTCTGCGGCCCGGCAACGCCGGATTTTT
CCCTTTCGAGTCGACACGACGCGGTTCTTGAACATGGACAGTAACCACGA
CGGTCGCGTCGACAAGCTGGAGTACCTCTGCGAGCTGTTGGTGACCCAGG
GCAAGTGCGAGAAAGGCGATATTGACGCCATTCTGACCAAGTTCGACATT
CTGGACTCGAACCTCACCGGATATCTGACCCGATCGGAGGTTGGAGCCAT
CTAG
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