mRNA_P-wetherbeei_contig140.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig140.3.1
Unique NamemRNA_P-wetherbeei_contig140.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig140.3.1 vs. uniprot
Match: A0A6H5KQ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.520e-20
Identity = 180/538 (33.46%), Postives = 223/538 (41.45%), Query Frame = 1 
Query:  358 GYYKENHPEDERYKDAQVLLDGVCVSLVRMLVPFLHDHFNKPCTDHETKEQ--ARMYDAFAVNQLTWPELARQCVMLRILRDQLGMDQTEATGWLRGGARRDPTTQRRDWQVDRATLALLRRRIERRWHGGAYERXXXXXXXXXXXXXXSSPLXXXXXXGPEHGTASATRGAXXXXRARPKAELESKQDAEPEVTSEAGQKENGDADGPVHSRVKSEEQKEXXXXXXXXXXXXXXGNGSATGVSPVKHESGDGAKKTVTFEAGAPEVHYRPADGDAPAQKGKPPAAPAGAGAAAVGSLSKDGSEHGXXXXXXXXXXXXXXXXXXXXDGASIKTGEDEAGXXXXXXXXXXXXXDNLESDDAVWATLRRRLDVLAADNGRGEALRRCAAVLRAFAAHPRAAVFGTAVSKDEEPDYAKIVERPVSIETIAEGLESGRYERTAATLGLFVGDNSCGGDGXXXXXXADPTV--PFVSDVRLMMEDCWCYNSEAADAWHAAARMSVVAERLLREWVW---PAPPARPLPLSAATDGFEPCSGCG 1950
            G Y E    +E  K+AQ LLDGVC+S+VR+L   LH     PC   + KE+    M +   VNQ+TWPELARQC++  + ++ L M   E TGW+RG  R         W   R    LLR+R+E+R                                    G  +A   A                 A P  TS AG      +D              XXXXXXXXXXXXXX                                                                       XXXXXXXXXXXXXXXXXXXX             XXXXXXXXXXXXX    +D+ V   LRRRL  LA D G+ EA+RRCA VLR  A H    VF   + + + P+Y  ++E P+++ ++ + LE           G   G  +   +G      A+  +   F   VR M E+CW YN E   AW AA R+S V ERLLREW+    PAPP  P  L   T    PCS CG
Sbjct: 1037 GGYGEEEGGEEAKKEAQALLDGVCMSIVRVLSIDLHTVLGSPCDQQKDKERESVAMSEVLVVNQMTWPELARQCIVANLAKEYLHMPDAEVTGWVRGAERH--------WTAARPYNILLRQRVEQR------------------------------------GNPTAAVVAT----------------AAPAATS-AGNAAVSSSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDETV---LRRRLHGLAEDEGKPEAVRRCAVVLREIARHRLGGVFLFPMDRMQSPEYYAVIEEPITVLSLLDFLE-----------GWSCGGTAEASEGGRSKAEAEAGLVDEFTISVRRMWENCWSYNHEGTKAWVAAVRLSSVFERLLREWILRATPAPPGLPQLLGGET---RPCSACG 1470
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BLAST of mRNA_P-wetherbeei_contig140.3.1 vs. uniprot
Match: D8LI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI13_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.400e-19
Identity = 70/172 (40.70%), Postives = 91/172 (52.91%), Query Frame = 1 
Query: 1438 ATLRRRLDVLAADNGRGEALRRCAAVLRAFAAHPRAAVFGTAVSKDEEPDYAKIVERPVSIETIAEGLESGRYERTAATLGLFVGDNSCGGDGXXXXXXADPTVPFVSDVRLMMEDCWCYNSEAADAWHAAARMSVVAERLLREWVWPAPPARP-LPLSAATDGFEPCSGCG 1950
            A LRRRL  LA D G+ EA+RRCA VLR  A H    VF   + + + P+Y  ++E P+++ ++ + LE      TA        + S GG+       A     F   VR M E+CW YN E   AW AA R+S V ERLLREW+  A PA P LP    ++   PCS CG
Sbjct:  905 AVLRRRLHGLAEDEGKPEAVRRCAVVLREIARHRLGGVFLFPMDRMQSPEYYAVIEEPITVLSLLDFLEGWSCGGTA--------EASEGGESTAEAE-AGLVDEFTISVRRMWENCWSYNHEGTKAWLAAVRLSSVFERLLREWILRATPAPPGLPQLLGSEA-RPCSACG 1066
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BLAST of mRNA_P-wetherbeei_contig140.3.1 vs. uniprot
Match: A0A8J5IMR6_9STRA (Cation-transporting ATPase n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IMR6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 8.360e-5
Identity = 45/147 (30.61%), Postives = 65/147 (44.22%), Query Frame = 1 
Query: 1504 CAAVLRAFAAHPRAAVFGTAVSKDEEPDYAKI--VERPVSIETIAEGLESGRYERTAATLGLFVGDNSCGGDGXXXXXXADPTVPFVSDVRLMMEDCWCYNSEAADAWHAAARMSVVAERLLREWVWPAPPARPLPLSAATDGFEPC 1938
            C  VL+   A   AA F   V  +  PDY     +  P+ + TI+E +E   YE                          D    FV DV+LM  +C+ YNS  A+  + A ++SV+ ERL++EWV   P  RP+ ++A  D    C
Sbjct:  960 CGFVLKLLRAKEIAAPFNQPVDAELYPDYYSSGDIPEPMDLGTISEKIEDEDYEH-------------------------DDVESFVDDVQLMWRNCYTYNSLKAEISNLAQKLSVIFERLMKEWVH-TPVNRPM-IAAEEDSCRNC 1079
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig140.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KQ21_9PHAE3.520e-2033.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI13_ECTSI2.400e-1940.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J5IMR6_9STRA8.360e-530.61Cation-transporting ATPase n=1 Tax=Phytophthora al... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig140contigP-wetherbeei_contig140:5589..7832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LI13
PFAMsPHD,RCC1
Model size1962
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.93e-20
EggNOG OGsKOG0825@1|root,KOG0825@2759|Eukaryota
DescriptionmRNA processing
Cds size1962
COG categoryLO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.9849303-CDS-P-wetherbeei_contig140:5588..70401683186004.9849303-CDS-P-wetherbeei_contig140:5588..7040Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig140 5589..7040 -
1683186004.9945145-CDS-P-wetherbeei_contig140:7322..78321683186004.9945145-CDS-P-wetherbeei_contig140:7322..7832Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig140 7323..7832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig140.3.1prot_P-wetherbeei_contig140.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig140 5589..7832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig140.3.1

>prot_P-wetherbeei_contig140.3.1 ID=prot_P-wetherbeei_contig140.3.1|Name=mRNA_P-wetherbeei_contig140.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=654bp
PAPAAPAAATAAGSRSAEEGGGGGGGRPTAADLMAVDEAAAGSTATATAA
APRPARGGDIMDEEEAEFGDDAPAAGGSCGGGDHNHSSPAAAHTAPAPAA
TASPRRRGGGHGGGGVHGAGYYKENHPEDERYKDAQVLLDGVCVSLVRML
VPFLHDHFNKPCTDHETKEQARMYDAFAVNQLTWPELARQCVMLRILRDQ
LGMDQTEATGWLRGGARRDPTTQRRDWQVDRATLALLRRRIERRWHGGAY
ERQQPPSSPLPPHHHHSSPLHHHHSSGPEHGTASATRGAAAAARARPKAE
LESKQDAEPEVTSEAGQKENGDADGPVHSRVKSEEQKESGGVGGSSGGGG
CCGNGSATGVSPVKHESGDGAKKTVTFEAGAPEVHYRPADGDAPAQKGKP
PAAPAGAGAAAVGSLSKDGSEHGGAAAAAGGGGGGGGDDNMDDDGASIKT
GEDEAGGDASGSDASDNDEDNLESDDAVWATLRRRLDVLAADNGRGEALR
RCAAVLRAFAAHPRAAVFGTAVSKDEEPDYAKIVERPVSIETIAEGLESG
RYERTAATLGLFVGDNSCGGDGGNGGGGADPTVPFVSDVRLMMEDCWCYN
SEAADAWHAAARMSVVAERLLREWVWPAPPARPLPLSAATDGFEPCSGCG
GALL
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mRNA from alignment at P-wetherbeei_contig140:5589..7832-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig140.3.1 ID=mRNA_P-wetherbeei_contig140.3.1|Name=mRNA_P-wetherbeei_contig140.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2244bp|location=Sequence derived from alignment at P-wetherbeei_contig140:5589..7832- (Phaeothamnion wetherbeei SAG_119_79)
CCGGCGCCGGCAGCGCCGGCGGCTGCGACGGCAGCTGGTTCCCGGTCTGC
CGAAGAGGGCGGCGGCGGCGGCGGCGGGCGTCCAACGGCGGCAGATTTGA
TGGCAGTGGACGAGGCTGCAGCGGGATCGACGGCGACGGCGACGGCGGCG
GCGCCGCGTCCCGCCCGCGGCGGCGATATCATGGACGAGGAAGAGGCCGA
ATTCGGCGACGACGCGCCGGCTGCTGGTGGCAGCTGCGGCGGCGGCGACC
ACAACCATAGCAGCCCCGCCGCCGCCCATACCGCCCCAGCTCCGGCCGCG
ACGGCGTCGCCCAGGAGGCGGGGCGGCGGCCACGGCGGCGGCGGTGTCCA
TGGCGCCGGCTATTACAAGGAGAATCACCCGGAGGACGAGAGGTACAAGG
ACGCGCAGGTGCTGCTGGACGGCGTCTGCGTGTCGCTTGTGCGCATGCTT
GTCCCCTTCCTCCACGACCACTTCAACAAGCCATGCACCGACCACGAGAC
CAAGGAGCAGGTGCGCATGTCCGTTTGAAATGGATACGCTGACGTTGGTT
TGGGAGAAGTGGGTTTCGGAGCTCGTTTTCGGATAAATTGGTAGCGGGTG
TAAAGCACCGAGTTCGGAAAGGTCTGGCTACTAACGGTCTAAAAGGGCTG
GGCATTATTTCGAACTGGCAGGTCTGGCGAGTAAGGTGACCGTAGAGAGG
GGCCAAGATGATCCATAAAACCTCCCATTGCTGCTCTACTCCTCCGGCTC
AATCATTTACAACACCGCGTGGCGTTAAACAACGACAAGCAGGCTCGGAT
GTACGACGCCTTCGCCGTCAATCAGCTGACGTGGCCCGAGCTTGCCCGGC
AGTGCGTCATGCTGCGGATCCTGCGGGACCAGTTGGGCATGGACCAGACG
GAGGCTACTGGCTGGCTCCGCGGCGGAGCCCGCCGGGATCCGACGACGCA
GCGGCGGGACTGGCAGGTCGACCGCGCCACGCTGGCGCTGCTGCGCCGCC
GGATCGAACGCCGGTGGCACGGCGGCGCTTACGAGCGGCAGCAGCCGCCG
TCGTCGCCACTACCACCGCATCATCACCATTCCTCGCCACTGCATCATCA
CCATTCGTCGGGTCCGGAGCATGGCACGGCATCGGCGACGAGGGGGGCAG
CGGCGGCGGCGCGGGCGAGACCAAAAGCGGAGTTGGAGTCGAAACAGGAC
GCCGAGCCGGAGGTTACGTCGGAGGCGGGCCAGAAGGAGAACGGCGACGC
CGACGGTCCGGTGCACTCACGTGTGAAGAGTGAGGAGCAGAAGGAGAGCG
GCGGCGTCGGCGGCAGCAGCGGCGGTGGTGGCTGCTGTGGGAACGGAAGC
GCCACGGGTGTCAGCCCGGTGAAGCACGAGTCCGGCGACGGGGCCAAGAA
GACGGTCACTTTCGAGGCGGGCGCCCCTGAGGTGCACTACCGACCGGCGG
ACGGTGACGCGCCCGCACAGAAGGGAAAGCCACCGGCCGCCCCGGCGGGG
GCCGGAGCAGCAGCGGTGGGCTCGCTGTCTAAAGACGGCAGCGAGCACGG
CGGCGCCGCCGCTGCCGCCGGGGGTGGCGGTGGCGGCGGCGGTGACGACA
ACATGGACGACGACGGCGCCAGCATCAAGACGGGGGAGGACGAGGCAGGT
GGCGATGCCTCTGGCTCTGATGCGTCGGACAATGATGAAGACAACTTGGA
GTCCGACGATGCCGTCTGGGCGACACTGCGCCGTCGGCTCGACGTGCTCG
CGGCGGACAACGGCCGCGGCGAGGCGCTGCGGCGCTGCGCGGCGGTGCTG
CGCGCGTTCGCGGCGCACCCGCGGGCTGCCGTCTTCGGGACGGCCGTGTC
GAAAGACGAGGAGCCGGACTACGCAAAAATTGTCGAAAGGCCCGTCAGCA
TCGAAACCATCGCCGAAGGGCTGGAGTCGGGCCGCTACGAGCGGACGGCC
GCCACCCTCGGCCTCTTTGTCGGCGACAACAGCTGCGGCGGCGATGGCGG
CAACGGCGGCGGCGGCGCCGACCCAACGGTACCATTCGTCTCGGACGTGC
GGCTCATGATGGAGGACTGTTGGTGCTATAACAGCGAGGCCGCCGACGCC
TGGCACGCCGCCGCCCGCATGTCGGTGGTCGCGGAGCGCCTTCTGCGCGA
GTGGGTCTGGCCGGCACCGCCGGCGCGGCCGCTGCCGCTATCGGCGGCGA
CGGACGGGTTCGAGCCGTGCTCGGGCTGCGGCGGCGCGCTGCTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig140:5589..7832-

>mRNA_P-wetherbeei_contig140.3.1 ID=mRNA_P-wetherbeei_contig140.3.1|Name=mRNA_P-wetherbeei_contig140.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1962bp|location=Sequence derived from alignment at P-wetherbeei_contig140:5589..7832- (Phaeothamnion wetherbeei SAG_119_79)
CCGGCGCCGGCAGCGCCGGCGGCTGCGACGGCAGCTGGTTCCCGGTCTGC
CGAAGAGGGCGGCGGCGGCGGCGGCGGGCGTCCAACGGCGGCAGATTTGA
TGGCAGTGGACGAGGCTGCAGCGGGATCGACGGCGACGGCGACGGCGGCG
GCGCCGCGTCCCGCCCGCGGCGGCGATATCATGGACGAGGAAGAGGCCGA
ATTCGGCGACGACGCGCCGGCTGCTGGTGGCAGCTGCGGCGGCGGCGACC
ACAACCATAGCAGCCCCGCCGCCGCCCATACCGCCCCAGCTCCGGCCGCG
ACGGCGTCGCCCAGGAGGCGGGGCGGCGGCCACGGCGGCGGCGGTGTCCA
TGGCGCCGGCTATTACAAGGAGAATCACCCGGAGGACGAGAGGTACAAGG
ACGCGCAGGTGCTGCTGGACGGCGTCTGCGTGTCGCTTGTGCGCATGCTT
GTCCCCTTCCTCCACGACCACTTCAACAAGCCATGCACCGACCACGAGAC
CAAGGAGCAGGCTCGGATGTACGACGCCTTCGCCGTCAATCAGCTGACGT
GGCCCGAGCTTGCCCGGCAGTGCGTCATGCTGCGGATCCTGCGGGACCAG
TTGGGCATGGACCAGACGGAGGCTACTGGCTGGCTCCGCGGCGGAGCCCG
CCGGGATCCGACGACGCAGCGGCGGGACTGGCAGGTCGACCGCGCCACGC
TGGCGCTGCTGCGCCGCCGGATCGAACGCCGGTGGCACGGCGGCGCTTAC
GAGCGGCAGCAGCCGCCGTCGTCGCCACTACCACCGCATCATCACCATTC
CTCGCCACTGCATCATCACCATTCGTCGGGTCCGGAGCATGGCACGGCAT
CGGCGACGAGGGGGGCAGCGGCGGCGGCGCGGGCGAGACCAAAAGCGGAG
TTGGAGTCGAAACAGGACGCCGAGCCGGAGGTTACGTCGGAGGCGGGCCA
GAAGGAGAACGGCGACGCCGACGGTCCGGTGCACTCACGTGTGAAGAGTG
AGGAGCAGAAGGAGAGCGGCGGCGTCGGCGGCAGCAGCGGCGGTGGTGGC
TGCTGTGGGAACGGAAGCGCCACGGGTGTCAGCCCGGTGAAGCACGAGTC
CGGCGACGGGGCCAAGAAGACGGTCACTTTCGAGGCGGGCGCCCCTGAGG
TGCACTACCGACCGGCGGACGGTGACGCGCCCGCACAGAAGGGAAAGCCA
CCGGCCGCCCCGGCGGGGGCCGGAGCAGCAGCGGTGGGCTCGCTGTCTAA
AGACGGCAGCGAGCACGGCGGCGCCGCCGCTGCCGCCGGGGGTGGCGGTG
GCGGCGGCGGTGACGACAACATGGACGACGACGGCGCCAGCATCAAGACG
GGGGAGGACGAGGCAGGTGGCGATGCCTCTGGCTCTGATGCGTCGGACAA
TGATGAAGACAACTTGGAGTCCGACGATGCCGTCTGGGCGACACTGCGCC
GTCGGCTCGACGTGCTCGCGGCGGACAACGGCCGCGGCGAGGCGCTGCGG
CGCTGCGCGGCGGTGCTGCGCGCGTTCGCGGCGCACCCGCGGGCTGCCGT
CTTCGGGACGGCCGTGTCGAAAGACGAGGAGCCGGACTACGCAAAAATTG
TCGAAAGGCCCGTCAGCATCGAAACCATCGCCGAAGGGCTGGAGTCGGGC
CGCTACGAGCGGACGGCCGCCACCCTCGGCCTCTTTGTCGGCGACAACAG
CTGCGGCGGCGATGGCGGCAACGGCGGCGGCGGCGCCGACCCAACGGTAC
CATTCGTCTCGGACGTGCGGCTCATGATGGAGGACTGTTGGTGCTATAAC
AGCGAGGCCGCCGACGCCTGGCACGCCGCCGCCCGCATGTCGGTGGTCGC
GGAGCGCCTTCTGCGCGAGTGGGTCTGGCCGGCACCGCCGGCGCGGCCGC
TGCCGCTATCGGCGGCGACGGACGGGTTCGAGCCGTGCTCGGGCTGCGGC
GGCGCGCTGCTA
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