mRNA_P-wetherbeei_contig140.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig140.1.3 vs. uniprot
Match: A0A6H5KQ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE) HSP 1 Score: 321 bits (822), Expect = 9.370e-86 Identity = 436/1372 (31.78%), Postives = 562/1372 (40.96%), Query Frame = 1
Query: 151 SAGSRDKGLLLSGKEGDMG---VGGMTPWGPFPGVPSCADWSLNLRMREALRWDGEARLLHDALRLLSRREGGCLPSPQA-WNPGERVAVMLALATVALTQPAKKIQLHLEDVEKRSENLRK-----TALTVGSKGFAGMLRSVGGDAAVMHWAAAHTLATGVAATDGXXXXXXXXXAGALDN--DEED-----EVGRVPGQCSKCKDSTGVPTAGALAAXXXXXXXXXXXXXXXXADQVAVCEKCRAEWHLK--CAKLRAAPKGE--WLCPACARLAEQRKKGGVSGTTHKIPKVEFEEEVRLMRERKAREHILKEEVLDYVMPLLRPPESEAAKRMRLQAEAVAACGGPTVGGSKGXXXXXXXXXXDGDAPGGLSIGPLITAAFSGGALKPGAGLGGSSAXXXXXXXXXXXXXXXXTSVVGDASGTGGDAGPTATDNGGATAXXXXXXXXXXXXXXXXXIGAAXXXXVGSDAASFVILDAEVDGAAAAXXXXXXXXXXXXXXXXXXXXXXXXLAADXXXXXFCKDMKKRGGPNTLRQPCERRRCQVVTGEVVVPTLSQIDWEGAL-----ASRGRG----VCEYCGLPELSLCSTLVRGMTAEEATEYIEKQRAAAAGHGAGASSREGGGGSLHKEAPIVLPRFQAA---------GDAGARDRR-GPIVHELCAQNMLKARAEHTQQHGLRQLRQRAVEEAVRLAGCRTEPLGRDRRGRVYFRFPGDEDRLYVCEPSGAPRDE-------EDAGAGSGGFDVGDFGGXXXXXXXXXXXXXXXXXVVLPPRPERSCE-WHVYEGPEDIRALLAWLNPRGKREKPLHVALQAAFAHRLAPAAPAXXXXXXXXXXXXXPGXAANXAGDAAGRQDGGSSDGGGSPWQGSRPGEHS-VADGGGVISRIEADSED------DGGVARSGRGRRDSIDGSVASDAESHAGGGGHXXXXXXXXXXXXXXVTASVRRTRATLTASPLPLGEMRQAVEVVLELIEG--------------KGQVPPELATVGIDDGDGDGAFDNDE-----VVQFDKKTWYALALVDSATGRILAVPPNVAVRFTYDVYLDHRVVLSESQGEPYKRAEAIYYFKAARFLRVGDFTVRFTV------EAPPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGEMSVKEMTKLLAGTKPLEYSVQVTARYQRTGAAAALHKLRAVEFQAGIGGXXXXNWRRKHAAASQLDVAPGKNEVTALKAALVTVMQALPHGALKD----------FSTSHDGGSEXXXXXXXXDGWTEAVREHWTNDVLSADGPEPLMEALLLLESCVEPRWLRPWYTPFVKRVQDPAYLLRLATPAAVALRLFQLDSALCYDK 3999
S GS +K G D G VGGM WGP GVP DWSL+ R RE L + AR+LHDALR+LSRREGG LPSP W+PGE VAV+ AL VA+ + D E+R ENLRK T ++ S +GML SVGG+ AV W + + DG A+ N DEED + G+ PG C C PTA A Q+ +C+ C+ E HLK C+ R P + + C C TT R+R+AR + P +EA XXXXXXXXXX AA GA LG + GD G GG XXXXXXXXXXXXXXXXX XXX G A V G A A A +C D KK GPN L+QPC +RRC+ + G+ IDW AL A+ G G CEYC E LCS +V ++ EEA +++ Q A G G+G + + H++ + PRF A G R GP+VHE+CAQ+M KARAE Q H LR LR++AVEEA+RL G +T PLGRDR GR Y+RFPGD R++V +P + + E GA GG D G V P P + E + VYE D+ AL+AWLN G+RE PL AL AF PA+P+ P X A A + A DG +P + VADG G D A + G XXXXXXXXX S R + L + E+ L EG V PE V D DG+ D+ V + KK +YA+ L D++TG +L + Y+++ ++V P+ + +Y+F A +F R G F + F V AP G EG + ++ + KPLE+ VQV+ R+ TGA AALHKLRAV + + A LD+ +E+ LK L T++ ALP GA K+ S E GWT ++RE W + V SA + LMEALLLLE C++ +WL+PWY P +++Q +LLRL+TPAAVALRLF LD A+ YDK
Sbjct: 1648 SGGSIEKDGQARGGTVDGGSGVVGGMGEWGPSEGVPKALDWSLSRRARECLESEDNARVLHDALRILSRREGGWLPSPTGCWSPGEWVAVLAAL--VAMAVETHTLNHFFSDAEQRCENLRKKVVSGTKMSTRSFQASGMLLSVGGNGAVEFWQRL------MKSVDGEMD--------AVKNCADEEDXXXXXDFGKTPGVCIVCW----CPTA------------------HIDASQILMCDGCQGEVHLKKSCSGFRRKPSDDTPFFCGGC--------------TTR--------------RDRQAR------------VEAAPAPAAEAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALK---YHGGANLGLEDSRREGEAAGQESRRGRRRWDRGDGEG------------GGGXXXXXXXXXXXXXXXXXXXXXXXXXXGRGEGATP-------VAGGAGAKRSKRCGICVGCR------------AKACDRCKYCLDSKKNNGPNKLKQPCIKRRCRNLPGDA-------IDWADALLPDPRANGGGGGGELECEYCFKMEKELCSPMVVDLSPEEAETFLKHQEAEQNGDGSGGAECS----NPHRK--VRFPRFSRARPGEGXXXXXXVGKSPRASGPVVHEVCAQSMFKARAERAQ-HKLRGLREQAVEEAIRLGGYQTLPLGRDRHGRFYYRFPGDSRRVFVSQPVREGKGDGLDSVVSEATGADGGGGDAKAAG-------VAAAQPSWRKLVPSPGGPAPAEEDFMVYENDGDVDALVAWLNESGQREGPLRAALLRAFP----PASPSP------------PXXEAALALEKADHGDG------------LKPSAAAMVADGEGXXXXXXXXXXXXXXXGADNVAAATAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRGGARRSSSRRAGDAASDRGVLARPSRNQELPRLLAEGGVELRVAVNPPGASNNVVVPETEVVVEFDNDGEAVEDDARNEGGGSVSWSKK-YYAVRLHDASTGEVLVPSQRQGISVVYEIWRGQQLVEFTPCDVPFDK-NGVYFFTAPKFHRTGRFRLVFHVVPAQFYAAPQPGD-----------------------------EGAATAEKKGFKI---KPLEFHVQVSPRFTYTGAVAALHKLRAVPY------LKQRHREESEAVEVDLDLRFDCDELECLKMGLFTLLNALPKGAFKEGGLTTDEVEGLSEQQXXXRERLPATTTTSGWTPSLRECWVSQVASATRGQDLMEALLLLELCLDQKWLKPWYRPAQQKMQSAWHLLRLSTPAAVALRLFALDRAILYDK 2818
BLAST of mRNA_P-wetherbeei_contig140.1.3 vs. uniprot
Match: D8LI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI13_ECTSI) HSP 1 Score: 306 bits (785), Expect = 3.190e-81 Identity = 415/1338 (31.02%), Postives = 550/1338 (41.11%), Query Frame = 1
Query: 208 VGGMTPWGPFPGVPSCADWSLNLRMREALRWDGEARLLHDALRLLSRREGGCLPSPQA-WNPGERVAVMLALATVALTQPAKKIQLHLEDVEKRSENLRKTALT---VGSKGFAGMLRSVGGDAAVMHWAAAHTLATGVAATDGXXXXXXXXXAGALDNDEED---EVGRVPGQCSKCKDSTGVPTAGALAAXXXXXXXXXXXXXXXXADQVAVCEKCRAEWHLK--CAKLRAAPKGE--WLCPACARLAEQRKKGGVSGTTHKIPKVEFEEEVRLMRERKAREHILKEEVLDYV----------------------MPLLRPPESEAAKRMRLQAEAVAACGGPTVGGSKGXXXXXXXXXXDGDAPGGLSIGPLITAAFSGGALKPGAGLGGSSAXXXXXXXXXXXXXXXXTSVVGDASGTGGDAGPTATDNGGATAXXXXXXXXXXXXXXXXXIGAAXXXXVGSDAASFVILDAEVDGAAAAXXXXXXXXXXXXXXXXXXXXXXXXLAADXXXXXFCKDMKKRGGPNTLRQPCERRRCQVVTGEVVVPTLSQIDWEGAL-----ASRGRG----VCEYCGLPELSLCSTLVRGMTAEEATEYIEKQRAAAAGHGAGASSREGGGGSLHKEAPIVLPRFQAA-------GDAGARDRR-GPIVHELCAQNMLKARAEHTQQHGLRQLRQRAVEEAVRLAGCRTEPLGRDRRGRVYFRFPGDEDRLYVCEPSGAPRDE-------EDAGAGSGGFDVGDFGGXXXXXXXXXXXXXXXXXVVLPPRPERSCE-WHVYEGPEDIRALLAWLNPRGKREKPLHVALQAAFAHRLAPAAPAXXXXXXXXXXXXXPGXAANXAGDAAGRQDGGSSDGGGSPWQGSRPGEHSVADGGGVISRIEADSEDDGGVARSGRGRRDSIDGSV------ASDAESHAGGGGHXXXXXXXXXXXXXXVTASVRRTRATLTASPLPLGEMRQAV----EVVLELIEGKGQVPPELATVGIDDGDGDGAFDNDEVVQFDKKTWYALALVDSATGRILAVPPNVAVRFTYDVYLDHRVVLSESQGEPYKRAEAIYYFKAARFLRVGDFTVRFTV------EAPPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGEMSVKEMTKLLAGTKPLEYSVQVTARYQRTGAAAALHKLRAVEFQAGIGGXXXXNWRRKHAAASQLDVAPGKNEVTALKAALVTVMQALPHGALKDFSTSHDGGSEXXXXXXXXDGWTEAVREHWTNDVLSADGPEPLMEALLLLESCVEPRWLRPWYTPFVKRVQDPAYLLRLATPAAVALRLFQLDSALCYDK 3999
VGGM WGP GVP DWSL+ R RE L + AR+LHDALR+L RREGG LPSP W+PGE VAV+ AL VA+ + D E+R ENLRK A++ + ++ F GML SVGG+ AV W + + DG D D + G+ PG C C PTA A Q+ +C+ C+ E HLK C+ R P + + C C +++ + + +E A +K+EV + V M PE E R + + A GG +G K G+ PG P G PG G + G+ SG PTA G AA XXXXXX XXXXXX +C D KK GPN L+QPC +RRC+ + G+ IDW AL A+ G G CEYC E LCS +V ++ EEA ++++Q A G G+GA G + H++ + PRF A G G R GP+VHE+CAQ+M KARAE Q H LR LR++AVEEA+RL G +T PLGRDR GR Y+RFPGD R++V P + + E GA G D XXXXXXXXXXXXXX V P P + E VYE D+ AL+AWLN G+RE PL AL AF PAXXXXXXXX A A + D G G +P +A + + AD E DG A DA S G + + L + P G + EVV+E + G+ E A G G G+ V + KK ++A+ L D++TG +L + Y+++ ++V P+ + +Y+F A +F R G F + F V AP G EG + ++ K KPLE+ VQV+ R+ TGA AALHKLRAV + R+ + A ++D+ + L AA T GWT ++RE W + V SA + LMEALLLLE C++ +WL+PWY P +++Q +LLRL+TPAAVALRLF LD A+ YDK
Sbjct: 1276 VGGMGEWGPSEGVPKALDWSLSRRARECLESEDNARVLHDALRILGRREGGWLPSPTGCWSPGEWVAVLAAL--VAMAVETHTLNHFFSDAEQRCENLRKKAVSGTKMSTRSFQGMLLSVGGNGAVEFWQRL------MKSVDGEMDAVKN----CADEDXXXXXXDFGKTPGVCIVCW----CPTA------------------HIDASQILMCDGCQGEVHLKKSCSGFRRKPSDDTPFFCGGCTARRDRQARVEAAXXXXXXXXXXXXXXXXXGKEEAAG---VKDEVKEGVGDKAPAAXXXXXXXXXXXXAKKMEFCEEPEDE----QRRKKKEAALKGGANLGLQK--FGPKREGPGPGNPPGRTQWEPHRGEGGGGRPRYPG-GWDQTQQAGWELPGKPPPRHQPKEPPGGNPSGP-----PTAG-----------------------------------------------RGEVAAPAXXXXXXKRSKRCGICVXXXXXXXXXXK----YCLDSKKNNGPNKLKQPCIKRRCRNLPGDA-------IDWADALLPDPRANGGGGGGELECEYCFKMEKELCSPMVVDLSPEEAETFLKQQEAEQNGDGSGAE-----GANPHRK--VRFPRFSRARPGEGGGGGVGRSPRASGPVVHEVCAQSMFKARAERAQ-HKLRGLREQAVEEAIRLGGYQTLPLGRDRHGRFYYRFPGDSRRVFVSHPVREGKGDGLDIVVSEATGADGAGGDAKAAXXXXXXXXXXXXXXXXRKLVPSPGGPAPAEEDLMVYENDGDVDALVAWLNESGQREGPLRAALLRAFP-------PAXXXXXXXX------------AAAALEKTDDG---------DGLKP----LAS-----AAMVADGEGDGXXXXXXXXXXXXXXXXXXXXXXRAGDAASDRG--------VLARPSRNQELPRLLAEGGVELRVAVNPPGASNNVLVPETEVVVEF-DNDGEAVEEDARNG-----GGGS------VSWSKK-YHAVRLHDASTGEVLVPSQRQGISVVYEIWRGQQLVEFTPCDVPFDK-NGVYFFTAPKFHRTGRFRLVFHVVPAQFYAAPQPGD-----------------------------EGAATAEK--KKGFNIKPLEFHVQVSPRFTYTGAVAALHKLRAVPY--------LKQRHREESEAVEVDLDLRFDCDEGLPAATTT------------------------------SGWTPSLRECWVSHVASATRSQDLMEALLLLELCLDQKWLKPWYRPAQQKMQSAWHLLRLSTPAAVALRLFALDRAILYDK 2370
BLAST of mRNA_P-wetherbeei_contig140.1.3 vs. uniprot
Match: A0A4D9D954_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D954_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 5.190e-16 Identity = 102/371 (27.49%), Postives = 151/371 (40.70%), Query Frame = 1
Query: 2962 VVLELIEGKGQ--VPPELATVGIDDGDGDGAFDNDEVVQFDKKTWYALALVDSAT----GRILAVPPNVAVRFTYDVYLDHRVVLSESQGEPYKRAEAIYYFKAARFLRVGDFTVRFTVEAPPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGEMSVKEMTKLLAGTKPLEYSVQVTARYQRTGAAAALHK-LRAVEFQAGIGGXXXXNWRRKHAAASQLDVAPGKNEVTALKAALVTVMQALPHGAL----KDFSTS------------HDGGSEXXXXXXXXDGWTEAVREHWTNDVLSADGPEPLMEALLLLESCVEPRWLRPWYTPFVKR-VQDPAYLLRLATPAAVA-LRLFQLDSALCYDK 3999
V L+ E K Q VP E+ + +D + + V+ +K ++A+ LVD+ GR N+ VRF ++ V E P + I++F FL G +T+R+TV+ L KPL V+V AR T + L+ L + G R + +LD+ +EV L+ AL+ + + LP+GAL +D S H G E WTEA++ W N ++ A+ P +ME LLLLESC+ P WL+PW+ P + ++LLRL T AA A LF LD A+ YDK
Sbjct: 1648 VALKFWEEKNQSPVPSEVLDIEVDPDIWGDSLERKAAVRKTRK-YHAVVLVDAEDKVWEGR------NLGVRF--QIFKGGEEV--EESSTPRAHKDHIFWFNVYEFLLPGLYTLRYTVDT---------------------------------------------LSREIKPLCLRVEVRARRAATSVRSVLNSHLSFLNISRG--------GRYSLRQSVELDIPEDADEVVGLRIALLQLKETLPNGALLESPEDLGGSIAHLGGGGSTNIHAGDGEVGPVRAPVCYWTEALQAQWINHLMEAETPHEVMEGLLLLESCLHPEWLKPWFHPLRRSYAATSSHLLRLGTTAAAAAFHLFILDKAILYDK 1954
BLAST of mRNA_P-wetherbeei_contig140.1.3 vs. uniprot
Match: A0A7R9U4T2_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4T2_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.430e-9 Identity = 60/181 (33.15%), Postives = 89/181 (49.17%), Query Frame = 1
Query: 3466 EYSVQVTARYQRTGAAAALHK-LRAVEFQAGIGGXXXXNWRRKHAAASQLDVAPG--KNEVTALKAALVTVMQALPHGALKDFSTSHDGGSEXXXXXXXXDGWTEAVREHWTNDVLSADGPEPLMEALLLLESCVEPRWLRPWYTPFVKRVQDPAYLLRLATPAAVALRLFQLDSALCYDK 3999
EY ++ T+ G + AL LRA+E + R A + + PG + +V +LK ++TV ALP G+L + H G+ E+VRE W + VLS++ + L EA+++LES ++ W+ AY LR+ATP AVALRLF LD + YDK
Sbjct: 1593 EYFMRATSARSLVGGSLALKSSLRALE----VAEQDKYALNRALVGAQRPSLTPGIIQKDVESLKTGILTVAAALPRGSLDE--EGH--------------GFVESVREAWESHVLSSETVQELSEAVVILESFLQKAWIGKGSGTVSS---SAAYFLRIATPGAVALRLFALDQLVRYDK 1750 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig140.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig140.1.3 >prot_P-wetherbeei_contig140.1.3 ID=prot_P-wetherbeei_contig140.1.3|Name=mRNA_P-wetherbeei_contig140.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=1344bp MAGGSGPEAAAAAARAAMAVTSPEPPLLSIDCGRSSSYCGGGGGGGGGGGback to top mRNA from alignment at P-wetherbeei_contig140:354..5279- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig140.1.3 ID=mRNA_P-wetherbeei_contig140.1.3|Name=mRNA_P-wetherbeei_contig140.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4926bp|location=Sequence derived from alignment at P-wetherbeei_contig140:354..5279- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig140:354..5279- >mRNA_P-wetherbeei_contig140.1.3 ID=mRNA_P-wetherbeei_contig140.1.3|Name=mRNA_P-wetherbeei_contig140.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=4032bp|location=Sequence derived from alignment at P-wetherbeei_contig140:354..5279- (Phaeothamnion wetherbeei SAG_119_79)back to top |