mRNA_P-wetherbeei_contig13982.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13982.2.1
Unique NamemRNA_P-wetherbeei_contig13982.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13982.2.1 vs. uniprot
Match: D7G4T6_ECTSI (Plastid protein-export protein secB, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4T6_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.590e-24
Identity = 54/111 (48.65%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:    1 ASRDPAFQRRMNAACNRVVRAILDADAGDEHGVRRAAAA---IATQRADLAV--DAESTIFFEHLLLVCNHELHPEVDKLSGFYAGAWTVILKYVEDAGWRLTDPPFTVTG 318
            A ++ A  +++N ACN VVR ILD +  +E    RA A    + +Q+ DL    D  S +FF++LLLVC HELHP++  L G Y  AW  IL YVEDAGW+LTDPPF+++G
Sbjct:   91 ARQEAARSKQLNIACNDVVRTILDGNPTNEK--ERAEALRQRLISQKDDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQYGKAWNTILHYVEDAGWQLTDPPFSISG 199
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BLAST of mRNA_P-wetherbeei_contig13982.2.1 vs. uniprot
Match: A0A836CL25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL25_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.840e-20
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:   22 QRRMNAACNRVVRAILDADA----GDEHGVRRAAAAIATQRADLAV--DAESTIFFEHLLLVCNHELHPEVDKLSGFYAGAWTVILKYVEDAGWRLTDPPFTVTG 318
            Q+ +N ACN V++ IL ADA     D  G++     +   +  L V  D +S +F+ +L+ VC H LHP + +L G YA AW  +L ++EDAGW+LT+PPF V G
Sbjct:   55 QKHLNIACNDVIKTILKADAEKLDSDMQGIKER---LIRDKELLVVTDDPQSELFYNNLVCVCEHSLHPRLHELKGRYASAWKSMLHWIEDAGWQLTEPPFRVNG 156
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13982.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4T6_ECTSI2.590e-2448.65Plastid protein-export protein secB, putative n=2 ... [more]
A0A836CL25_9STRA5.840e-2041.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13982contigP-wetherbeei_contig13982:1390..1710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size321
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionPlastid protein-export protein secB, putative
Ec32 orthologEc-20_000420.1
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.2376077-UTR-P-wetherbeei_contig13982:1389..14191683186004.2376077-UTR-P-wetherbeei_contig13982:1389..1419Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13982 1390..1419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186004.2453263-CDS-P-wetherbeei_contig13982:1419..17101683186004.2453263-CDS-P-wetherbeei_contig13982:1419..1710Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13982 1420..1710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13982.2.1prot_P-wetherbeei_contig13982.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13982 1420..1710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13982.2.1

>prot_P-wetherbeei_contig13982.2.1 ID=prot_P-wetherbeei_contig13982.2.1|Name=mRNA_P-wetherbeei_contig13982.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
MNAACNRVVRAILDADAGDEHGVRRAAAAIATQRADLAVDAESTIFFEHL
LLVCNHELHPEVDKLSGFYAGAWTVILKYVEDAGWRLTDPPFTVTG*
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mRNA from alignment at P-wetherbeei_contig13982:1390..1710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13982.2.1 ID=mRNA_P-wetherbeei_contig13982.2.1|Name=mRNA_P-wetherbeei_contig13982.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig13982:1390..1710+ (Phaeothamnion wetherbeei SAG_119_79)
GCGAGCCGTGACCCGGCCTTCCAGCGCCGGATGAACGCCGCCTGCAACCG
CGTCGTGCGCGCCATCCTCGACGCCGACGCCGGTGACGAGCACGGCGTCC
GCCGCGCTGCCGCTGCCATCGCCACGCAGCGCGCGGATCTGGCCGTCGAC
GCCGAATCGACCATCTTCTTCGAGCACCTTCTGCTGGTCTGCAATCACGA
ATTGCACCCGGAAGTTGATAAGCTTTCCGGATTCTACGCGGGCGCGTGGA
CCGTCATTTTAAAGTACGTGGAAGACGCTGGGTGGCGGTTGACGGACCCG
CCGTTCACCGTTACCGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13982:1390..1710+

>mRNA_P-wetherbeei_contig13982.2.1 ID=mRNA_P-wetherbeei_contig13982.2.1|Name=mRNA_P-wetherbeei_contig13982.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig13982:1390..1710+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGCCGCCTGCAACCGCGTCGTGCGCGCCATCCTCGACGCCGACGC
CGGTGACGAGCACGGCGTCCGCCGCGCTGCCGCTGCCATCGCCACGCAGC
GCGCGGATCTGGCCGTCGACGCCGAATCGACCATCTTCTTCGAGCACCTT
CTGCTGGTCTGCAATCACGAATTGCACCCGGAAGTTGATAAGCTTTCCGG
ATTCTACGCGGGCGCGTGGACCGTCATTTTAAAGTACGTGGAAGACGCTG
GGTGGCGGTTGACGGACCCGCCGTTCACCGTTACCGGCTGA
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