mRNA_P-wetherbeei_contig13958.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13958.1.1
Unique NamemRNA_P-wetherbeei_contig13958.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13958.1.1 vs. uniprot
Match: A0A6H5JI02_9PHAE (ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI02_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.260e-43
Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 1
Query:    1 LLRAWVRTGMVQNVLSKATKYALFDPTKEMAYIPLDKEYKVKGKAAIDVLGARLGKSGGALVQQALVVVCGTILTGAPVLAAMFALVNAMWISSVLKLGQLFHQKVKDNER 333
            ++  WV  GMVQNVLSKATKYALFDPTKEMAYIPLDKE KVKGKAAIDVLGARLGKSGGAL QQ LVV CG+ILTGAPVLA +FA+V+AMWI+SV+ L +LF  +  + E+
Sbjct:  539 MMAVWV--GMVQNVLSKATKYALFDPTKEMAYIPLDKESKVKGKAAIDVLGARLGKSGGALAQQGLVVACGSILTGAPVLATLFAMVSAMWITSVVNLAKLFRVRQAEAEK 647          
BLAST of mRNA_P-wetherbeei_contig13958.1.1 vs. uniprot
Match: A0A8J5XQC4_DIALT (ADP,ATP carrier protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XQC4_DIALT)

HSP 1 Score: 140 bits (352), Expect = 1.030e-36
Identity = 75/107 (70.09%), Postives = 88/107 (82.24%), Query Frame = 1
Query:    4 LRAWVRTGMVQNVLSKATKYALFDPTKEMAYIPLDKEYKVKGKAAIDVLGARLGKSGGALVQQALVVVCGTILTGAPVLAAMFALVNAMWISSVLKLGQLFHQKVKD 324
            LR  V  G VQNVLSKA KYALFDPTKEMAYIPLD++ K+KGKAAIDVLGARLGKSGGAL+QQA+VV  G+IL GAPV+A++F+ V   WI+SV KL  LF  K+K+
Sbjct:  465 LRMAVLVGTVQNVLSKAVKYALFDPTKEMAYIPLDEDSKLKGKAAIDVLGARLGKSGGALIQQAIVVYTGSILGGAPVIASLFSAVIIAWIASVNKLNVLFKAKLKE 571          
BLAST of mRNA_P-wetherbeei_contig13958.1.1 vs. uniprot
Match: W7T7G0_9STRA (ADP,ATP carrier protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T7G0_9STRA)

HSP 1 Score: 137 bits (346), Expect = 9.960e-36
Identity = 74/99 (74.75%), Postives = 81/99 (81.82%), Query Frame = 1
Query:   25 GMVQNVLSKATKYALFDPTKEMAYIPLDKEYKVKGKAAIDVLGARLGKSGGALVQQALVVVCGTILTGAPVLAAMFALVNAMWISSVLKLGQLFHQKVK 321
            G VQN+LSKATKYA FDPTKEMAYIPLD+E KVKGKAAIDVLGARLGKSGGAL QQALV+  G I+ GAPVLA +F LV   W+SSV KL  LFH+  K
Sbjct:  512 GTVQNILSKATKYAFFDPTKEMAYIPLDEEAKVKGKAAIDVLGARLGKSGGALGQQALVLAFGGIMQGAPVLAGLFYLVIIGWLSSVNKLAHLFHENEK 610          
BLAST of mRNA_P-wetherbeei_contig13958.1.1 vs. uniprot
Match: A0A7S3UWV3_HETAK (ADP,ATP carrier protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWV3_HETAK)

HSP 1 Score: 135 bits (341), Expect = 4.970e-35
Identity = 70/100 (70.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:   16 VRTGMVQNVLSKATKYALFDPTKEMAYIPLDKEYKVKGKAAIDVLGARLGKSGGALVQQALVVVCGTILTGAPVLAAMFALVNAMWISSVLKLGQLFHQK 315
            V  G VQN+ SKATKYALFDPTKEMAYIPLDKE K KGKAAIDVLGARLGKSGGAL QQ LVV+ G+IL  AP+L A+F  V A+W+ +VL+L  +F +K
Sbjct:  511 VTIGTVQNIFSKATKYALFDPTKEMAYIPLDKESKSKGKAAIDVLGARLGKSGGALAQQFLVVIVGSILNAAPILGALFYAVIALWVGAVLRLSTMFAEK 610          
BLAST of mRNA_P-wetherbeei_contig13958.1.1 vs. uniprot
Match: A0A7S2XUF9_9STRA (ADP,ATP carrier protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUF9_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.380e-34
Identity = 73/102 (71.57%), Postives = 81/102 (79.41%), Query Frame = 1
Query:   25 GMVQNVLSKATKYALFDPTKEMAYIPLDKEYKVKGKAAIDVLGARLGKSGGALVQQALVVVCGTILTGAPVLAAMFALVNAMWISSVLKLGQLFHQKVKDNE 330
            G VQN+ SKATKYALFDPTKEMAYIPLDKE K KGKAAIDVLGARLGKSGGAL QQ LV+  GTI+  APVL+ +F  V  +WI SVLKL +LF  K K+ E
Sbjct:  621 GTVQNIFSKATKYALFDPTKEMAYIPLDKESKSKGKAAIDVLGARLGKSGGALAQQVLVIFVGTIVRAAPVLSVLFYGVIFLWIISVLKLSKLFEIKQKEAE 722          
BLAST of mRNA_P-wetherbeei_contig13958.1.1 vs. uniprot
Match: L1IL04_GUITC (ADP,ATP carrier protein n=3 Tax=Guillardia theta TaxID=55529 RepID=L1IL04_GUITC)

HSP 1 Score: 133 bits (335), Expect = 2.240e-34
Identity = 68/106 (64.15%), Postives = 85/106 (80.19%), Query Frame = 1
Query:   16 VRTGMVQNVLSKATKYALFDPTKEMAYIPLDKEYKVKGKAAIDVLGARLGKSGGALVQQALVVVCGTILTGAPVLAAMFALVNAMWISSVLKLGQLFHQKVKDNER 333
            V  GMVQN+LSKA KYALFDPTKEMAYIPLD+E KVKGKAAIDVL AR+GKSGGALVQQA+V++ G I+ GA  +AA+F    A+WI  V+ L  +F +K+K+ ++
Sbjct:  444 VYVGMVQNILSKAIKYALFDPTKEMAYIPLDQESKVKGKAAIDVLAARIGKSGGALVQQAIVIIFGNIINGASSVAAVFFATIAVWIYGVMGLATMFEEKLKEGKK 549          
BLAST of mRNA_P-wetherbeei_contig13958.1.1 vs. uniprot
Match: V8TP30_9CHLA (ADP,ATP carrier protein n=3 Tax=Chlamydia pecorum TaxID=85991 RepID=V8TP30_9CHLA)

HSP 1 Score: 125 bits (314), Expect = 1.650e-31
Identity = 66/105 (62.86%), Postives = 80/105 (76.19%), Query Frame = 1
Query:   16 VRTGMVQNVLSKATKYALFDPTKEMAYIPLDKEYKVKGKAAIDVLGARLGKSGGALVQQALVVVCGTILTGAPVLAAMFALVNAMWISSVLKLGQLFHQKVKDNE 330
            V  G +QN+LSK+TKYALFD TKEMAYIPLD+E KVKGKAAIDV+ AR GKSGGAL+QQ L+VVCG+I    P LA +  L+ A+W+ S  KL +LF   +KD E
Sbjct:  397 VIVGAIQNILSKSTKYALFDATKEMAYIPLDQEQKVKGKAAIDVVAARFGKSGGALIQQGLLVVCGSIGAMTPHLAIILFLIIAVWLVSATKLNKLFLAALKDKE 501          
BLAST of mRNA_P-wetherbeei_contig13958.1.1 vs. uniprot
Match: A0A7S2SW40_9STRA (ADP,ATP carrier protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW40_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.720e-30
Identity = 65/110 (59.09%), Postives = 81/110 (73.64%), Query Frame = 1
Query:    4 LRAWVRTGMVQNVLSKATKYALFDPTKEMAYIPLDKEYKVKGKAAIDVLGARLGKSGGALVQQALVVVCGTILTGAPVLAAMFALVNAMWISSVLKLGQLFHQKVKDNER 333
            L A V  G  Q++LSKA K ALFDPT +MAYIPLD E KVKGKAAIDV+G+R GKSGGAL+QQ LV+V G+I+T AP +AA+F  V A W+ S  +L + F  K+K  E+
Sbjct:  388 LMAVVTLGACQSMLSKAAKNALFDPTTQMAYIPLDAESKVKGKAAIDVMGSRFGKSGGALIQQGLVLVFGSIITAAPAVAALFFAVIAAWVYSAFQLAEQFEAKLKAKEK 497          
BLAST of mRNA_P-wetherbeei_contig13958.1.1 vs. uniprot
Match: A0A2H9TAH2_9ZZZZ (ADP,ATP carrier protein 1 n=1 Tax=invertebrate metagenome TaxID=1711999 RepID=A0A2H9TAH2_9ZZZZ)

HSP 1 Score: 122 bits (305), Expect = 2.270e-30
Identity = 64/101 (63.37%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   25 GMVQNVLSKATKYALFDPTKEMAYIPLDKEYKVKGKAAIDVLGARLGKSGGALVQQALVVVCGTILTGAPVLAAMFALVNAMWISSVLKLGQLFHQKVKDN 327
            GM QN+LSKA+KYA+FDPTKEMAYIPLD+E KVKGKAAIDV+GARLGKSGGALVQQAL++  GTI    P L  +  L+   W S+   LG+ F +K   N
Sbjct:  390 GMSQNILSKASKYAMFDPTKEMAYIPLDEEQKVKGKAAIDVIGARLGKSGGALVQQALIIAFGTISAITPYLGIVLLLIILSWSSAAWFLGKQFKKKTDGN 490          
BLAST of mRNA_P-wetherbeei_contig13958.1.1 vs. uniprot
Match: A0A7S2HZ29_9STRA (ADP,ATP carrier protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HZ29_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.740e-30
Identity = 61/101 (60.40%), Postives = 75/101 (74.26%), Query Frame = 1
Query:    4 LRAWVRTGMVQNVLSKATKYALFDPTKEMAYIPLDKEYKVKGKAAIDVLGARLGKSGGALVQQALVVVCGTILTGAPVLAAMFALVNAMWISSVLKLGQLF 306
            L A V  G VQ +LSK  KYALFDPT +MAYIPLD+E KVKGKAAIDVLG+R+GKSGG+L+QQ LV + G IL+ AP ++ +F  +   W+SS  KL  LF
Sbjct:   39 LNAAVALGTVQCLLSKTAKYALFDPTTQMAYIPLDEESKVKGKAAIDVLGSRIGKSGGSLIQQGLVFIFGDILSAAPAVSILFYCILLGWMSSANKLSGLF 139          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13958.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI02_9PHAE2.260e-4374.77ADP,ATP carrier protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J5XQC4_DIALT1.030e-3670.09ADP,ATP carrier protein n=1 Tax=Diacronema lutheri... [more]
W7T7G0_9STRA9.960e-3674.75ADP,ATP carrier protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S3UWV3_HETAK4.970e-3570.00ADP,ATP carrier protein (Fragment) n=1 Tax=Heteros... [more]
A0A7S2XUF9_9STRA1.380e-3471.57ADP,ATP carrier protein n=1 Tax=Fibrocapsa japonic... [more]
L1IL04_GUITC2.240e-3464.15ADP,ATP carrier protein n=3 Tax=Guillardia theta T... [more]
V8TP30_9CHLA1.650e-3162.86ADP,ATP carrier protein n=3 Tax=Chlamydia pecorum ... [more]
A0A7S2SW40_9STRA1.720e-3059.09ADP,ATP carrier protein n=2 Tax=Rhizochromulina ma... [more]
A0A2H9TAH2_9ZZZZ2.270e-3063.37ADP,ATP carrier protein 1 n=1 Tax=invertebrate met... [more]
A0A7S2HZ29_9STRA3.740e-3060.40ADP,ATP carrier protein n=1 Tax=Helicotheca tamesi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13958contigP-wetherbeei_contig13958:313..1513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FVM4
PFAMsTLC
Model size333
Max annot lvl2759|Eukaryota
KEGG koko:K03301
KEGG TC2.A.12
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.43e-42
EggNOG OGsCOG3202@1|root,2QSRY@2759|Eukaryota
DescriptionATP:ADP antiporter activity
Cds size306
COG categoryC
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186003.3485436-CDS-P-wetherbeei_contig13958:312..3871683186003.3485436-CDS-P-wetherbeei_contig13958:312..387Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13958 313..387 -
1683186003.3628938-CDS-P-wetherbeei_contig13958:860..9981683186003.3628938-CDS-P-wetherbeei_contig13958:860..998Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13958 861..998 -
1683186003.3717844-CDS-P-wetherbeei_contig13958:1393..14861683186003.3717844-CDS-P-wetherbeei_contig13958:1393..1486Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13958 1394..1486 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186003.380353-UTR-P-wetherbeei_contig13958:1486..15131683186003.380353-UTR-P-wetherbeei_contig13958:1486..1513Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13958 1487..1513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13958.1.1prot_P-wetherbeei_contig13958.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13958 313..1486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13958.1.1

>prot_P-wetherbeei_contig13958.1.1 ID=prot_P-wetherbeei_contig13958.1.1|Name=mRNA_P-wetherbeei_contig13958.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
MVQNVLSKATKYALFDPTKEMAYIPLDKEYKVKGKAAIDVLGARLGKSGG
ALVQQALVVVCGTILTGAPVLAAMFALVNAMWISSVLKLGQLFHQKVKDN
ER
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mRNA from alignment at P-wetherbeei_contig13958:313..1513-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13958.1.1 ID=mRNA_P-wetherbeei_contig13958.1.1|Name=mRNA_P-wetherbeei_contig13958.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1201bp|location=Sequence derived from alignment at P-wetherbeei_contig13958:313..1513- (Phaeothamnion wetherbeei SAG_119_79)
CTTCTGCGTGCCTGGGTCCGCACAGGGATGGTCCAGAACGTGCTGTCGAA GGCGACCAAATACGCGCTGTTCGACCCCACCAAGGAGATGGCATACATCC CCCTCGATAAGGAGTACAAGGTGCGCCGGCGGGCACTCTTTTTGACGTAG CCGTAACGGCCGTAAAAAATATCGCGGCAGGTTAGGTAGATGCGTCCAGC GTGACTGGGCGGGTGCTATCATGAGTAGCCGTAACCGCCGTCACCGATGC CATAACGGATTTAGATAAGAGGGCGGTGGCGGCGATATTCCTTCTTCGCG CAAAGAGCCTCTTTGGAAATGCTTTTGAAGGCGTTGCTGTTCAACGCCTG TTCCCAGACCAGTCGCAACACGTCTTCTGCAAGGATGGACGATTCTCATT GCGCAACGGTTCAGGTTCCGGTTCCCAGAACTCATCCCCAATCGTTCTGC CTCGCCGTGGCCCGTTGGCGGTGCGCCTCCCCGCCTGCGGTGGCGGCGGC GGCGGAGTTGCACAGGTAAAAGGCAAGGCGGCGATCGACGTGTTAGGGGC GCGGCTGGGCAAATCGGGCGGCGCGTTGGTGCAGCAGGCCCTCGTCGTCG TCTGCGGCACCATCCTCACGGGCGCCCCCGTCCTCGCCGCTATGTTTGCC CTGGTGAGTTCCGTTCCTTTTGACAACCCATGTGGCGTATTCAGTGTAAT CCGTTCGTTAGTGTTTTCCATTCGTGCATTCCGTTCATGCGTTCCATTCA TGAATACTACTTTGCTTTTGCCCGTGGGTTTGTGTTTTCGTCGCCCCTTC TCCTTGTGTCTGCCTGCTGTTGTTGGCTGCAGGTTCGTGGCTGGCTGGGT GGCGGTCGCGAGCTCGTTGGATGTGGAGGCATTGTCTTGCTTCGCGGTGG CAGTAGCGAGGGCGGCATTAAATTTGGTCTCGGAGGCGTGGCTTTGCGGC GCCGGCGCTAGGTCAACGGCTTTGCGGCGCCGGCGCTAGGTCAACGGCAT TGCCGATAGTGGCAGAAAGGGATTCCGCCATATTCACTATCCCTTTTAGA TGACCGAAATTGCCTCACAATGCTCCGGCGTTTGTCCCTTTTCTGCTTTG TGTGCTCTGGCCAATCTTTAACGCAGGTGAACGCCATGTGGATCAGCTCG GTGCTAAAGCTCGGACAGCTCTTCCACCAAAAGGTCAAGGACAACGAGCG G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13958:313..1513-

>mRNA_P-wetherbeei_contig13958.1.1 ID=mRNA_P-wetherbeei_contig13958.1.1|Name=mRNA_P-wetherbeei_contig13958.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig13958:313..1513- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCCAGAACGTGCTGTCGAAGGCGACCAAATACGCGCTGTTCGACCC
CACCAAGGAGATGGCATACATCCCCCTCGATAAGGAGTACAAGGTAAAAG
GCAAGGCGGCGATCGACGTGTTAGGGGCGCGGCTGGGCAAATCGGGCGGC
GCGTTGGTGCAGCAGGCCCTCGTCGTCGTCTGCGGCACCATCCTCACGGG
CGCCCCCGTCCTCGCCGCTATGTTTGCCCTGGTGAACGCCATGTGGATCA
GCTCGGTGCTAAAGCTCGGACAGCTCTTCCACCAAAAGGTCAAGGACAAC
GAGCGG
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