mRNA_P-wetherbeei_contig13944.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13944.1.1
Unique NamemRNA_P-wetherbeei_contig13944.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13944.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13944contigP-wetherbeei_contig13944:94..1702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1609
Hectar predicted targeting categoryother localisation
Exons1
Cds size930
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.9328506-UTR-P-wetherbeei_contig13944:93..4601683186002.9328506-UTR-P-wetherbeei_contig13944:93..460Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13944 94..460 +
1683186002.9523704-UTR-P-wetherbeei_contig13944:1390..17021683186002.9523704-UTR-P-wetherbeei_contig13944:1390..1702Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13944 1391..1702 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.9431646-CDS-P-wetherbeei_contig13944:460..13901683186002.9431646-CDS-P-wetherbeei_contig13944:460..1390Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13944 461..1390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13944.1.1prot_P-wetherbeei_contig13944.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13944 461..1390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13944.1.1

>prot_P-wetherbeei_contig13944.1.1 ID=prot_P-wetherbeei_contig13944.1.1|Name=mRNA_P-wetherbeei_contig13944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=310bp
MAPDPTWPGPATELAQITPLFGSPPGSDERQSGALETAPDDVVAAAAVAD
ETAAAPAVAAEETADAVAAVAVVAVTSAVELVVAGPVDGALVVDDATSER
ERANASAAESLSGASSTMPEQEEAAASVAAAAAATATEEEERERMAAAAV
LREARAVAASPTDAERAQAEEDEAVAAATEMEAAEAAEAAAVAAAAAAAA
EATVAEEVSAVARSAESEVDAAAGVPGLEPGQQQQQQQDDAAAIEVAVDA
ASAAAEEAPATVPASPVGDGPPVDIYTDFDRVHDESICLKKKNFFEKLLG
CCSPDKDDA*
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mRNA from alignment at P-wetherbeei_contig13944:94..1702+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13944.1.1 ID=mRNA_P-wetherbeei_contig13944.1.1|Name=mRNA_P-wetherbeei_contig13944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1609bp|location=Sequence derived from alignment at P-wetherbeei_contig13944:94..1702+ (Phaeothamnion wetherbeei SAG_119_79)
AACAGTCGCGCCGACCAACTCTGTGGAGGCAAACGCTGCGACGGCGGCTG
AGAACGAGGAAGAAGAGCTGGCCGCGGCAGTTGTGGACGCGGCCGAGTCA
GCGTCAGAGCCGGAGATTGCGTTAGCGAAAGAAGCCATCACGGAAGACGC
CGTCGCGGAGGCCAATGCGCCGGCTGAAGAGGCGCCGACGGAAAACGCCG
TCAAAGCAGCCACCGCCAGTGCGACCGCGGACGCGACTGCTGACGCCGCC
GACGTGGCTGTTGATGCCGATGCTGGCACTGGCGAGGCCGAGGAGGCCGC
TGTGGACGCGGCGCCGGCGCCGCTGGGGGCGCCGGCGGTGTGGCCCGGGC
CAGCCATCTCGCTGAGCATGGCGCCAGACCCAACGTGGCCGGGCCCTGCC
ACGGAACTGGCGCAGATCACACCGCTTTTCGGCAGCCCGCCGGGCAGCGA
CGAGCGGCAGTCCGGCGCCTTGGAGACGGCGCCGGACGATGTGGTCGCGG
CGGCGGCGGTTGCTGACGAGACTGCCGCCGCGCCGGCGGTGGCGGCGGAG
GAAACGGCTGATGCGGTTGCCGCCGTGGCGGTGGTGGCGGTGACCTCGGC
AGTGGAATTGGTGGTGGCCGGCCCCGTCGACGGCGCCCTCGTCGTCGACG
ACGCCACCTCGGAGCGCGAACGCGCCAACGCTTCGGCCGCCGAGTCGCTG
TCGGGCGCCAGTAGCACGATGCCTGAGCAGGAGGAGGCGGCGGCATCGGT
GGCTGCGGCGGCAGCTGCGACTGCCACCGAGGAGGAAGAGCGGGAACGCA
TGGCGGCGGCGGCGGTCCTGCGGGAGGCCCGAGCCGTGGCGGCGTCGCCG
ACGGACGCGGAGCGCGCGCAGGCAGAGGAGGACGAGGCAGTAGCCGCTGC
CACCGAGATGGAGGCCGCAGAGGCGGCCGAGGCGGCGGCCGTAGCGGCAG
CGGCGGCGGCCGCAGCAGAGGCGACGGTGGCAGAGGAGGTGAGCGCGGTG
GCGCGCTCGGCCGAGTCCGAGGTAGACGCGGCGGCAGGCGTACCGGGGCT
GGAACCGGGGCAGCAGCAGCAGCAGCAGCAGGACGACGCCGCGGCGATAG
AGGTGGCCGTGGACGCCGCCTCCGCAGCCGCCGAGGAAGCACCGGCGACG
GTGCCGGCTTCTCCGGTCGGCGACGGGCCTCCCGTCGACATCTACACGGA
CTTCGACAGGGTCCATGATGAGTCCATCTGCCTCAAGAAAAAGAACTTCT
TCGAGAAGCTCCTCGGCTGCTGCTCGCCGGACAAGGACGACGCTTGAGCC
GTGTCGTGAAGAAAGGCCGCGGTGTCGTGAACAAAAAGCGCAGTGTCGAT
GAAGCTGTCACAGCAAAGCCACTGCTGCGGTGAACCGCTGTTGCGGTTAA
GCCGCTGCGCCGGCAGTACCGTTGCCGCGGTAGAGCCGGTTTGGGTTGAG
CGTGCTGTGATGCCCCATATCGCCAAGAGAGGGAGGGGTCGCGGCGGAGT
GGCGGAGTCGCAGAGGAACAGTGGGAAGGAGCGGAGCTGACAGGCGACTT
TTAACCGGCAGGACTTGGCCGCCGCCGTCGACTGCTTTTTGACGCCCAGA
GCCCCGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13944:94..1702+

>mRNA_P-wetherbeei_contig13944.1.1 ID=mRNA_P-wetherbeei_contig13944.1.1|Name=mRNA_P-wetherbeei_contig13944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=930bp|location=Sequence derived from alignment at P-wetherbeei_contig13944:94..1702+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCAGACCCAACGTGGCCGGGCCCTGCCACGGAACTGGCGCAGAT
CACACCGCTTTTCGGCAGCCCGCCGGGCAGCGACGAGCGGCAGTCCGGCG
CCTTGGAGACGGCGCCGGACGATGTGGTCGCGGCGGCGGCGGTTGCTGAC
GAGACTGCCGCCGCGCCGGCGGTGGCGGCGGAGGAAACGGCTGATGCGGT
TGCCGCCGTGGCGGTGGTGGCGGTGACCTCGGCAGTGGAATTGGTGGTGG
CCGGCCCCGTCGACGGCGCCCTCGTCGTCGACGACGCCACCTCGGAGCGC
GAACGCGCCAACGCTTCGGCCGCCGAGTCGCTGTCGGGCGCCAGTAGCAC
GATGCCTGAGCAGGAGGAGGCGGCGGCATCGGTGGCTGCGGCGGCAGCTG
CGACTGCCACCGAGGAGGAAGAGCGGGAACGCATGGCGGCGGCGGCGGTC
CTGCGGGAGGCCCGAGCCGTGGCGGCGTCGCCGACGGACGCGGAGCGCGC
GCAGGCAGAGGAGGACGAGGCAGTAGCCGCTGCCACCGAGATGGAGGCCG
CAGAGGCGGCCGAGGCGGCGGCCGTAGCGGCAGCGGCGGCGGCCGCAGCA
GAGGCGACGGTGGCAGAGGAGGTGAGCGCGGTGGCGCGCTCGGCCGAGTC
CGAGGTAGACGCGGCGGCAGGCGTACCGGGGCTGGAACCGGGGCAGCAGC
AGCAGCAGCAGCAGGACGACGCCGCGGCGATAGAGGTGGCCGTGGACGCC
GCCTCCGCAGCCGCCGAGGAAGCACCGGCGACGGTGCCGGCTTCTCCGGT
CGGCGACGGGCCTCCCGTCGACATCTACACGGACTTCGACAGGGTCCATG
ATGAGTCCATCTGCCTCAAGAAAAAGAACTTCTTCGAGAAGCTCCTCGGC
TGCTGCTCGCCGGACAAGGACGACGCTTGA
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