mRNA_P-wetherbeei_contig13941.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13941.1.1
Unique NamemRNA_P-wetherbeei_contig13941.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13941.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13941contigP-wetherbeei_contig13941:159..1772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1038
Hectar predicted targeting categoryother localisation
Exons2
Cds size1038
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.872181-CDS-P-wetherbeei_contig13941:158..9651683186002.872181-CDS-P-wetherbeei_contig13941:158..965Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13941 159..965 -
1683186002.8803504-CDS-P-wetherbeei_contig13941:1541..17721683186002.8803504-CDS-P-wetherbeei_contig13941:1541..1772Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13941 1542..1772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13941.1.1prot_P-wetherbeei_contig13941.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13941 159..1772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13941.1.1

>prot_P-wetherbeei_contig13941.1.1 ID=prot_P-wetherbeei_contig13941.1.1|Name=mRNA_P-wetherbeei_contig13941.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=346bp
YRHFALPLQDFSALERALGQKLEGVEEARRTYLRRLSTAKNRAEFQAALA
AFAVESGVLEALEGFSLNSLNPEAATRPLADFVFEAKPSILASGFPAEIR
NELPLPERLQNFIERWPENARLVSDVPFTFGKGSQQREVLVLAREGLTEA
NAEMFRRDYVDTIGCDTISFPLREGAEHLRTRIGALTFALSPEGLRVDDY
QAPRPRRRRLEAVLRLESAEMWNLRRAVGAILDNTLAVLGPITLDAGSRR
TTARIDDNRPLDGGEHNCTTWITLAPLGTAGEDLATLAQMPAHWTSHDNP
GWWSMFLTGASRSPRAGLVVYWTDKSLHEEPCASGVPIPWDFNLR*
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mRNA from alignment at P-wetherbeei_contig13941:159..1772-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13941.1.1 ID=mRNA_P-wetherbeei_contig13941.1.1|Name=mRNA_P-wetherbeei_contig13941.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1614bp|location=Sequence derived from alignment at P-wetherbeei_contig13941:159..1772- (Phaeothamnion wetherbeei SAG_119_79)
TACCGCCACTTCGCGCTGCCCCTCCAGGATTTTTCCGCGCTGGAGCGGGC
CCTGGGGCAAAAGCTCGAGGGAGTCGAGGAGGCCCGAAGGACCTATTTGC
GGCGCCTGAGCACCGCAAAAAATCGAGCGGAATTTCAGGCAGCCCTGGCT
GCCTTCGCGGTGGAAAGTGGAGTGCTCGAAGCTCTCGAGGGCTTCAGCCT
AAACTCCCTCAACCCCGAGGCGGCTACGCGGGTCCAGGCCCTTATGCCGC
TCTCCCACGTCACCCCACGGACGTCCTGGAGCGGTTCCCTGTCCCGCCGA
CTGGCTCGTCTTCAATCTCGCTGGCCCGCCCAGGTCCGATACACTCGGTC
TTCGCTTGTGATCAGCCTGCACGGGCTCAATGCCCAGGGCCGTTCCCGTC
TGGTCGCCGATTATCTCGATGCGGTCGCCTACCACAGCTTCTCCGTCCGC
GCCACGGACCGGGGAGAAATGGAGATGCGGGTGGGTCACCACACCTTCAC
GCCGGGAACGGCGGCCTCCCAATCCGGCGTCTTCCAACCCCGCACCGATC
TCCTGGAGCCAGTTCTGGAGCTGTCCCCTCTGCAATACCTGTCTTTGCGT
CAGCATCTGGCCGCTCACGAGCCGGGGGAACACGCGGCCCACCGGGTGTC
GGCGAGCGGTTGGCTGCGCACGATGCGCACGGGCCCAGGCGAAGTTCTGG
AGCAGACCCTGCGGCTCCCAGCGCCGGGAATCATCGAGACCGCCGCTCAG
TTGATAGGGCACCTGCTGCAAGCCCAACCGGCGGTTGTCGTCCAGTGGAC
CGAGCAGCCTCTGGCGGACTTTGTCTTCGAGGCGAAGCCGTCCATCCTCG
CCTCCGGATTTCCCGCGGAGATCCGGAACGAGCTTCCCTTACCCGAGCGG
CTGCAAAACTTTATCGAGCGGTGGCCTGAAAATGCCCGCCTTGTCTCTGA
CGTTCCCTTCACTTTCGGCAAAGGAAGTCAGCAACGTGAAGTCCTGGTGT
TGGCGCGGGAAGGGTTGACTGAAGCGAATGCAGAGATGTTCCGCCGGGAT
TACGTCGACACGATAGGTTGCGACACGATCTCCTTTCCGCTGCGCGAAGG
GGCTGAGCATCTGCGCACCCGCATCGGGGCCCTCACCTTTGCCCTCAGCC
CCGAAGGGCTGCGCGTGGATGATTACCAGGCTCCCCGGCCCCGGCGGCGT
CGCCTGGAAGCGGTCTTGCGGCTCGAGTCCGCCGAGATGTGGAACCTGAG
ACGCGCGGTGGGAGCCATCCTCGACAATACGCTGGCAGTTCTTGGCCCTA
TCACCCTCGATGCGGGAAGCCGGAGAACGACGGCCCGAATCGATGACAAC
CGGCCTCTCGACGGTGGCGAGCACAACTGTACGACCTGGATCACTCTGGC
GCCGCTGGGAACCGCCGGCGAAGATCTGGCGACCCTGGCGCAGATGCCCG
CTCACTGGACTTCTCACGACAATCCCGGCTGGTGGTCGATGTTTTTAACC
GGCGCGTCCCGCAGCCCGCGCGCAGGCCTGGTCGTGTACTGGACCGACAA
GAGTCTGCACGAAGAGCCCTGTGCGAGCGGCGTGCCCATCCCCTGGGACT
TCAACCTCAGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13941:159..1772-

>mRNA_P-wetherbeei_contig13941.1.1 ID=mRNA_P-wetherbeei_contig13941.1.1|Name=mRNA_P-wetherbeei_contig13941.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1038bp|location=Sequence derived from alignment at P-wetherbeei_contig13941:159..1772- (Phaeothamnion wetherbeei SAG_119_79)
TACCGCCACTTCGCGCTGCCCCTCCAGGATTTTTCCGCGCTGGAGCGGGC
CCTGGGGCAAAAGCTCGAGGGAGTCGAGGAGGCCCGAAGGACCTATTTGC
GGCGCCTGAGCACCGCAAAAAATCGAGCGGAATTTCAGGCAGCCCTGGCT
GCCTTCGCGGTGGAAAGTGGAGTGCTCGAAGCTCTCGAGGGCTTCAGCCT
AAACTCCCTCAACCCCGAGGCGGCTACGCGGCCTCTGGCGGACTTTGTCT
TCGAGGCGAAGCCGTCCATCCTCGCCTCCGGATTTCCCGCGGAGATCCGG
AACGAGCTTCCCTTACCCGAGCGGCTGCAAAACTTTATCGAGCGGTGGCC
TGAAAATGCCCGCCTTGTCTCTGACGTTCCCTTCACTTTCGGCAAAGGAA
GTCAGCAACGTGAAGTCCTGGTGTTGGCGCGGGAAGGGTTGACTGAAGCG
AATGCAGAGATGTTCCGCCGGGATTACGTCGACACGATAGGTTGCGACAC
GATCTCCTTTCCGCTGCGCGAAGGGGCTGAGCATCTGCGCACCCGCATCG
GGGCCCTCACCTTTGCCCTCAGCCCCGAAGGGCTGCGCGTGGATGATTAC
CAGGCTCCCCGGCCCCGGCGGCGTCGCCTGGAAGCGGTCTTGCGGCTCGA
GTCCGCCGAGATGTGGAACCTGAGACGCGCGGTGGGAGCCATCCTCGACA
ATACGCTGGCAGTTCTTGGCCCTATCACCCTCGATGCGGGAAGCCGGAGA
ACGACGGCCCGAATCGATGACAACCGGCCTCTCGACGGTGGCGAGCACAA
CTGTACGACCTGGATCACTCTGGCGCCGCTGGGAACCGCCGGCGAAGATC
TGGCGACCCTGGCGCAGATGCCCGCTCACTGGACTTCTCACGACAATCCC
GGCTGGTGGTCGATGTTTTTAACCGGCGCGTCCCGCAGCCCGCGCGCAGG
CCTGGTCGTGTACTGGACCGACAAGAGTCTGCACGAAGAGCCCTGTGCGA
GCGGCGTGCCCATCCCCTGGGACTTCAACCTCAGGTAG
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