mRNA_P-wetherbeei_contig13929.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13929.1.1
Unique NamemRNA_P-wetherbeei_contig13929.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13929.1.1 vs. uniprot
Match: A0A7Z9PXN4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PXN4_9BACT)

HSP 1 Score: 93.2 bits (230), Expect = 2.550e-21
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 LMEDHRDAYFLWKELAIRDAVCLHVDAHLDISNFKVPEYDLD-CPEVNCANFLLHACREKIVAHTIWVIPD 210
            LMEDHR+AYF WKEL +    CLH+DAHLD+S+ K P  +L   PE++C NFLL A RE IV+  +WVIP+
Sbjct:    8 LMEDHREAYFFWKELGLEGLPCLHIDAHLDVSDLKAPANELVYSPEIHCGNFLLPAIREGIVSSLVWVIPN 78
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BLAST of mRNA_P-wetherbeei_contig13929.1.1 vs. uniprot
Match: UPI0013EE251B (hypothetical protein n=1 Tax=Litoribacterium kuwaitense TaxID=1398745 RepID=UPI0013EE251B)

HSP 1 Score: 55.8 bits (133), Expect = 2.060e-7
Identity = 26/69 (37.68%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:    1 LMEDHRDAYFLWKELAIRDAVCLHVDAHLDISNFKVPEYDLDCPEVNCANFLLHACREKIVAHTIWVIP 207
            +++DH +AY++WKE  I  A  LH+DAH DI + K         E++  +F+ HA    IV    W+IP
Sbjct:    4 VIDDHDEAYYIWKENNISKATLLHIDAHSDIQDEK---------ELHIGSFIRHAINTNIVNSYYWIIP 63
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BLAST of mRNA_P-wetherbeei_contig13929.1.1 vs. uniprot
Match: A0A132TVX5_9BACL (Uncharacterized protein n=2 Tax=Paenibacillus sonchi group TaxID=2044880 RepID=A0A132TVX5_9BACL)

HSP 1 Score: 54.3 bits (129), Expect = 7.490e-7
Identity = 24/69 (34.78%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:    4 MEDHRDAYFLWKELAIRDAVCLHVDAHLDISNFKVPEYDLDCPEVNCANFLLHACREKIVAHTIWVIPD 210
            +++H +AY +WK+ ++++AV  H+DAH D   F   E    C  ++  NFL +A  + I+   +W+IPD
Sbjct:    7 IDNHDEAYQIWKDNSVKEAVLFHIDAHKD---FVTDE----CNYISIGNFLNYAWSDGIINTIVWIIPD 68
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BLAST of mRNA_P-wetherbeei_contig13929.1.1 vs. uniprot
Match: A0A2V9K6M9_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9K6M9_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 5.030e-6
Identity = 23/70 (32.86%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 LMEDHRDAYFLWKELAIRDAVCLHVDAHLDISNFKVPEYDLDCPEVNCANFLLHACREKIVAHTIWVIPD 210
            +ME+H +AY +W++  +R A  +HVDAH D+  +  PE +     +  A+F+  A ++ ++    WV+PD
Sbjct:   17 VMENHDEAYRIWRDAGVRQATLVHVDAHHDM--WWNPEPN----SLTIADFICPALKDDLIRQVFWVVPD 80
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BLAST of mRNA_P-wetherbeei_contig13929.1.1 vs. uniprot
Match: A0A7Z9PXY4_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PXY4_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 1.720e-5
Identity = 19/31 (61.29%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:    1 LMEDHRDAYFLWKELAIRDAVCLHVDAHLDI 93
            +MEDH  AY LWKE  +R+ +C+HVDAHLD+
Sbjct:    7 VMEDHSGAYVLWKESDLRNGICIHVDAHLDV 37
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13929.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7Z9PXN4_9BACT2.550e-2157.75Uncharacterized protein (Fragment) n=1 Tax=Phycisp... [more]
UPI0013EE251B2.060e-737.68hypothetical protein n=1 Tax=Litoribacterium kuwai... [more]
A0A132TVX5_9BACL7.490e-734.78Uncharacterized protein n=2 Tax=Paenibacillus sonc... [more]
A0A2V9K6M9_9BACT5.030e-632.86Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A7Z9PXY4_9BACT1.720e-561.29Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13929contigP-wetherbeei_contig13929:83..292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size210
Hectar predicted targeting categoryother localisation
Exons1
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.1447191-CDS-P-wetherbeei_contig13929:82..2891683186002.1447191-CDS-P-wetherbeei_contig13929:82..289Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13929 83..289 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186002.154548-UTR-P-wetherbeei_contig13929:289..2921683186002.154548-UTR-P-wetherbeei_contig13929:289..292Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13929 290..292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13929.1.1prot_P-wetherbeei_contig13929.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13929 83..289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13929.1.1

>prot_P-wetherbeei_contig13929.1.1 ID=prot_P-wetherbeei_contig13929.1.1|Name=mRNA_P-wetherbeei_contig13929.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
MEDHRDAYFLWKELAIRDAVCLHVDAHLDISNFKVPEYDLDCPEVNCANF
LLHACREKIVAHTIWVIPD
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mRNA from alignment at P-wetherbeei_contig13929:83..292-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13929.1.1 ID=mRNA_P-wetherbeei_contig13929.1.1|Name=mRNA_P-wetherbeei_contig13929.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig13929:83..292- (Phaeothamnion wetherbeei SAG_119_79)
CTGATGGAGGATCACCGGGACGCCTACTTCCTCTGGAAGGAGCTGGCCAT
TCGGGATGCTGTGTGCCTGCACGTTGATGCGCATCTCGACATCAGCAACT
TCAAGGTGCCCGAATACGACCTCGACTGCCCCGAGGTCAACTGTGCCAAC
TTTTTGCTGCACGCCTGCCGAGAGAAGATTGTGGCTCATACCATCTGGGT
CATCCCGGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13929:83..292-

>mRNA_P-wetherbeei_contig13929.1.1 ID=mRNA_P-wetherbeei_contig13929.1.1|Name=mRNA_P-wetherbeei_contig13929.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig13929:83..292- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGATCACCGGGACGCCTACTTCCTCTGGAAGGAGCTGGCCATTCG
GGATGCTGTGTGCCTGCACGTTGATGCGCATCTCGACATCAGCAACTTCA
AGGTGCCCGAATACGACCTCGACTGCCCCGAGGTCAACTGTGCCAACTTT
TTGCTGCACGCCTGCCGAGAGAAGATTGTGGCTCATACCATCTGGGTCAT
CCCGGAT
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