mRNA_P-wetherbeei_contig13867.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13867.1.1
Unique NamemRNA_P-wetherbeei_contig13867.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13867.1.1 vs. uniprot
Match: A0A3R6ZU19_9STRA (Aminotran_5 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZU19_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.980e-67
Identity = 111/166 (66.87%), Postives = 134/166 (80.72%), Query Frame = 1
Query:    1 VRVNLIGRLSPFTTPFGQRPLVYADWTATGRPLRVIEEFIRSEVLPFYGNTHTTSSITGLQSTCFRAEARQIIAQAVNAKVTGRAAEDVVLFAGSGATAAVTKLVAALGLHRPPPPGGLRPVVLVGPHEHHSNLLPWRESCAEVVAVAEASSGGIDLADLERRLRT 498
            +R  +IGR S F TPFG RPLVYAD+TA+GR L+ IE+++++EVLP YGNTHTT+SITGLQSTCFR E RQI+AQ VNAK+TGR AEDVVLF GSG+T A+ KLV ALGLH P P G  +PVV VGP EHHSNLLPWRES A+VV + E+S G +D+A L+ +L T
Sbjct:   59 IRSTVIGRNSAFDTPFGVRPLVYADYTASGRSLQCIEDYMQTEVLPQYGNTHTTTSITGLQSTCFRHETRQIVAQCVNAKITGRGAEDVVLFTGSGSTGAIHKLVLALGLHVPIPDGRPKPVVFVGPFEHHSNLLPWRESSADVVQIGESSDGTVDIAALKLQLTT 224          
BLAST of mRNA_P-wetherbeei_contig13867.1.1 vs. uniprot
Match: A0A6H5JLY0_9PHAE (Aminotran_5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY0_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 5.010e-64
Identity = 116/169 (68.64%), Postives = 136/169 (80.47%), Query Frame = 1
Query:    1 VRVNLIGRLSPFTTPFGQRPLVYADWTATGRPLRVIEEFIRSEVLPFYGNTHTTSSITGLQSTCFRAEARQIIAQAVNAKVTGRAAEDVVLFAGSGATAAVTKLVAALGLHRPPPPGGL---RPVVLVGPHEHHSNLLPWRESCAEVVAVAE-ASSGGIDLADLERRLR 495
            VR  L+GR +PF TP+G +PLVY+DWTATGR +  IE ++  +V+P +GNTHTT+SITG Q++CFR EARQIIAQAVNAKVTGRAAEDVVLF G+GAT+AV KLV+ALGL  P PPG     RPV+ VGP EHHSNLLPWRESC EVV V E  SSGG+DLA LE +LR
Sbjct:   98 VRQGLLGRNTPFRTPYGMKPLVYSDWTATGRAVASIETYLADQVVPLFGNTHTTTSITGAQTSCFRHEARQIIAQAVNAKVTGRAAEDVVLFTGTGATSAVAKLVSALGLAAPFPPGWNPDDRPVIFVGPLEHHSNLLPWRESCGEVVTVRENRSSGGVDLAHLEDQLR 266          
BLAST of mRNA_P-wetherbeei_contig13867.1.1 vs. uniprot
Match: W4GX72_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GX72_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.420e-63
Identity = 111/166 (66.87%), Postives = 134/166 (80.72%), Query Frame = 1
Query:    1 VRVNLIGRLSPFTTPFGQRPLVYADWTATGRPLRVIEEFIRSEVLPFYGNTHTTSSITGLQSTCFRAEARQIIAQAVNAKVTGRAAEDVVLFAGSGATAAVTKLVAALGLHRPPPPGGLRPVVLVGPHEHHSNLLPWRESCAEVVAVAEASSGGIDLADLERRLRT 498
            +R  +IGR S F TPFG RPLVYAD+TA+GR L+ IE+++++EVLP YGNTHTT+SITGLQSTCFR E RQI+AQ VNAK+TGR AEDVVLF GSG+T A+ KLV ALGLH P P G  +PVV VGP EHHSNLLPWRES A+VV + E+S G +D+A L+ +L T
Sbjct:   59 IRSTVIGRNSAFDTPFGVRPLVYADYTASGRTLQCIEDYMQTEVLPQYGNTHTTTSITGLQSTCFRHETRQIVAQCVNAKITGRGAEDVVLFTGSGSTGAIHKLVLALGLHVPIPDGRPKPVVFVGPFEHHSNLLPWRESSADVVQIGESSDGTVDIAALKLQLTT 224          
BLAST of mRNA_P-wetherbeei_contig13867.1.1 vs. uniprot
Match: A0A1V9ZU97_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZU97_9STRA)

HSP 1 Score: 219 bits (557), Expect = 2.540e-63
Identity = 110/164 (67.07%), Postives = 130/164 (79.27%), Query Frame = 1
Query:    1 VRVNLIGRLSPFTTPFGQRPLVYADWTATGRPLRVIEEFIRSEVLPFYGNTHTTSSITGLQSTCFRAEARQIIAQAVNAKVTGRAAEDVVLFAGSGATAAVTKLVAALGLHRPPPPGGLRPVVLVGPHEHHSNLLPWRESCAEVVAVAEASSGGIDLADLERRL 492
            +R +L+G   PF TP+G RPLVYAD+TA+GR L  IE+++R+EVLP YGNTHTT+SITGLQSTCFR E RQI+AQ VNAK+TGR AEDVVLF GSG+TAA+ KLV  LGLH P  PG  RPVV VGP EHHSNLLPWRES AEVV +AE + G +D+  L  +L
Sbjct:   35 MRASLVGHKVPFDTPYGPRPLVYADFTASGRSLACIEDYMRAEVLPLYGNTHTTTSITGLQSTCFRHETRQIVAQCVNAKITGRGAEDVVLFTGSGSTAAINKLVQILGLHVPLLPGVGRPVVFVGPFEHHSNLLPWRESAAEVVQIAENAEGNVDMVMLAAKL 198          
BLAST of mRNA_P-wetherbeei_contig13867.1.1 vs. uniprot
Match: D7FR81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR81_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 3.210e-63
Identity = 116/169 (68.64%), Postives = 134/169 (79.29%), Query Frame = 1
Query:    1 VRVNLIGRLSPFTTPFGQRPLVYADWTATGRPLRVIEEFIRSEVLPFYGNTHTTSSITGLQSTCFRAEARQIIAQAVNAKVTGRAAEDVVLFAGSGATAAVTKLVAALGLHRPPPPGGL---RPVVLVGPHEHHSNLLPWRESCAEVVAVAE-ASSGGIDLADLERRLR 495
            VR  L+GR +PF TP+G +PLVY+DWTATGR +  IE ++   V+P +GNTHT +SITG Q++CFR EARQIIAQAVNAKVTGRAAEDVVLF G+GATAAV KLV+ALGL  P PPG     RPV+ VGP EHHSNLLPWRESC EVV V E  SSGG+DLA LE +LR
Sbjct:   87 VRRGLLGRNTPFRTPYGMKPLVYSDWTATGRAVASIETYLADRVVPLFGNTHTATSITGAQTSCFRHEARQIIAQAVNAKVTGRAAEDVVLFTGTGATAAVAKLVSALGLAVPLPPGWNPDDRPVIFVGPLEHHSNLLPWRESCGEVVTVRENPSSGGVDLAHLEEQLR 255          
BLAST of mRNA_P-wetherbeei_contig13867.1.1 vs. uniprot
Match: A0A6G0WTZ0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTZ0_9STRA)

HSP 1 Score: 216 bits (551), Expect = 1.990e-62
Identity = 110/164 (67.07%), Postives = 133/164 (81.10%), Query Frame = 1
Query:    1 VRVNLIGRLSPFTTPFGQRPLVYADWTATGRPLRVIEEFIRSEVLPFYGNTHTTSSITGLQSTCFRAEARQIIAQAVNAKVTGRAAEDVVLFAGSGATAAVTKLVAALGLHRPPPPGGLRPVVLVGPHEHHSNLLPWRESCAEVVAVAEASSGGIDLADLERRL 492
            +R  +IGR S F TPFG RPLVYAD+TA+GR L+ IE++++ EVLP YGNTHTT+SITGLQSTCFR E RQI+AQAVNAK+TGR AEDVVLF GSG+T+AV KLV ALGLH P   G  +PVV VGP EHHSNLLPWRES A+VV++ E ++G +DL  L ++L
Sbjct:   66 IRQGVIGRNSAFETPFGTRPLVYADYTASGRSLQAIEDYMQMEVLPQYGNTHTTTSITGLQSTCFRHETRQIVAQAVNAKITGRGAEDVVLFTGSGSTSAVVKLVQALGLHIPIAHGASKPVVFVGPFEHHSNLLPWRESSADVVSIPENAAGQVDLEVLRQQL 229          
BLAST of mRNA_P-wetherbeei_contig13867.1.1 vs. uniprot
Match: A0A024U7E6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U7E6_9STRA)

HSP 1 Score: 213 bits (541), Expect = 4.550e-61
Identity = 108/164 (65.85%), Postives = 131/164 (79.88%), Query Frame = 1
Query:    1 VRVNLIGRLSPFTTPFGQRPLVYADWTATGRPLRVIEEFIRSEVLPFYGNTHTTSSITGLQSTCFRAEARQIIAQAVNAKVTGRAAEDVVLFAGSGATAAVTKLVAALGLHRPPPPGGLRPVVLVGPHEHHSNLLPWRESCAEVVAVAEASSGGIDLADLERRL 492
            +R  +IG  S F TPFG RPLVYAD+TA+GR L+ IE+++++EVLP YGNTHTT+SITGLQ+TCFR E RQIIAQ VNAK+TGR AEDVVLF GSG+T A+ KLV ALGLH P   G  +PVV VGP EHHSNLLPWRES A+VV ++E S G +D++ L+R L
Sbjct:   62 IRSTVIGHNSAFDTPFGTRPLVYADYTASGRSLQCIEDYMQTEVLPQYGNTHTTTSITGLQTTCFRHETRQIIAQCVNAKITGRGAEDVVLFTGSGSTGAIAKLVQALGLHVPIVDGRPKPVVFVGPFEHHSNLLPWRESSADVVQISETSEGIVDVSMLKREL 225          
BLAST of mRNA_P-wetherbeei_contig13867.1.1 vs. uniprot
Match: A0A836CNZ6_9STRA (Pyridoxal phosphate-dependent transferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNZ6_9STRA)

HSP 1 Score: 210 bits (534), Expect = 3.670e-60
Identity = 111/177 (62.71%), Postives = 132/177 (74.58%), Query Frame = 1
Query:    1 VRVNLIGRLSPFTTPFGQRPLVYADWTATGRPLRVIEEFIRSEVLPFYGNTHTTSSITGLQSTCFRAEARQIIAQAVNAKVTGRAAEDVVLFAGSGATAAVTKLVAALGLHRPPPPG---GLRPVVLVGPHEHHSNLLPWRESCAEVVAVAEAS----------SGGIDLADLERRL 492
            +R  L+GRLSPF +P+GQ PLVYADWTATGR L  IE +I +EV+P YGNTHTT+SITG QSTCF+ EARQ++A+ VNAK+TGRA+ED VLF G+GATAAV KLV ALGL +  PPG     RPVV VGP EHHSNLLPWRESCAEVV + + +            G+D+  LER L
Sbjct:   59 IRRELVGRLSPFMSPYGQMPLVYADWTATGRSLASIESYIANEVMPMYGNTHTTTSITGSQSTCFQHEARQLVAEYVNAKITGRASEDCVLFTGNGATAAVAKLVQALGLCQQLPPGTPRNQRPVVFVGPWEHHSNLLPWRESCAEVVMLRDTAWSRRGEGXXXXXGVDMEHLERVL 235          
BLAST of mRNA_P-wetherbeei_contig13867.1.1 vs. uniprot
Match: A0A485LRI5_9STRA (Aste57867_23115 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRI5_9STRA)

HSP 1 Score: 210 bits (534), Expect = 4.350e-60
Identity = 108/165 (65.45%), Postives = 131/165 (79.39%), Query Frame = 1
Query:    1 VRVNLIGRLSPFTTPFGQRPLVYADWTATGRPLRVIEEFIRSEVLPFYGNTHTTSSITGLQSTCFRAEARQIIAQAVNAKVTGRAAEDVVLFAGSGATAAVTKLVAALGLHRPP-PPGGLRPVVLVGPHEHHSNLLPWRESCAEVVAVAEASSGGIDLADLERRL 492
            +R  +IGR S F TP+G RPLVYAD+TA+GR L+ IE+++++EVLP YGNTHTT+SITGLQSTCFR E RQI+AQ VNAK+TGR AEDVVLF GSG+T+AV KLV ALGLH P       +PVV VGP EHHSNLLPWRES A+VV +AE ++G +D A L  +L
Sbjct:   55 IRGGVIGRNSAFETPYGTRPLVYADYTASGRSLKAIEDYMQAEVLPQYGNTHTTTSITGLQSTCFRHETRQIVAQCVNAKITGRGAEDVVLFTGSGSTSAVNKLVQALGLHVPILSTAAKKPVVFVGPFEHHSNLLPWRESSADVVQIAETAAGAVDTAMLAAKL 219          
BLAST of mRNA_P-wetherbeei_contig13867.1.1 vs. uniprot
Match: A0A7S3MGR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGR1_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.480e-59
Identity = 103/167 (61.68%), Postives = 134/167 (80.24%), Query Frame = 1
Query:    1 VRVNLIGRLSPFTTPFGQRPLVYADWTATGRPLRVIEEFIRSEVLPFYGNTHTTSSITGLQSTCFRAEARQIIAQAVNAKVTGRAAEDVVLFAGSGATAAVTKLVAALGLHRPPPPG---GLRPVVLVGPHEHHSNLLPWRESCAEVVAVAEASSGGIDLADLERRL 492
            +R +++G  + FTTPFGQ+P++YADWTA+GRP+  IE+++  EV+PFYGNTHT +SITG QSTCFR EARQI+A++VNAKVTG+AAEDVV+F G+G TAAV KLV ALGL+ P P       +PVV V  +EHHSNLLPWRES A+VV +A  ++ G++L DLER+L
Sbjct:   43 IRNDIVGGYNAFTTPFGQKPIIYADWTASGRPVDKIEKYLLKEVMPFYGNTHTAASITGHQSTCFRHEARQIVAESVNAKVTGKAAEDVVIFTGNGTTAAVNKLVDALGLNLPLPQNHDISKKPVVFVSSYEHHSNLLPWRESVADVVTIAYDAATGVNLVDLERQL 209          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13867.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3R6ZU19_9STRA1.980e-6766.87Aminotran_5 domain-containing protein n=1 Tax=Apha... [more]
A0A6H5JLY0_9PHAE5.010e-6468.64Aminotran_5 domain-containing protein n=1 Tax=Ecto... [more]
W4GX72_9STRA1.420e-6366.87Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
A0A1V9ZU97_9STRA2.540e-6367.07Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
D7FR81_ECTSI3.210e-6368.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6G0WTZ0_9STRA1.990e-6267.07Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024U7E6_9STRA4.550e-6165.85Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A836CNZ6_9STRA3.670e-6062.71Pyridoxal phosphate-dependent transferase (Fragmen... [more]
A0A485LRI5_9STRA4.350e-6065.45Aste57867_23115 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S3MGR1_9STRA2.480e-5961.68Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13867contigP-wetherbeei_contig13867:71..568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FR81
PFAMsATP_bind_3,Aminotran_5
Model size498
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons1
Evalue5.26e-64
EggNOG OGsCOG0037@1|root,KOG2840@2759|Eukaryota
Ec32 ortholog descriptionclass-V aminotransferase
Ec32 orthologEc-03_004780.1
DescriptiontRNA thio-modification
Cds size498
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185999.788164-CDS-P-wetherbeei_contig13867:70..5681683185999.788164-CDS-P-wetherbeei_contig13867:70..568Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13867 71..568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13867.1.1prot_P-wetherbeei_contig13867.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13867 71..568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13867.1.1

>prot_P-wetherbeei_contig13867.1.1 ID=prot_P-wetherbeei_contig13867.1.1|Name=mRNA_P-wetherbeei_contig13867.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
VRVNLIGRLSPFTTPFGQRPLVYADWTATGRPLRVIEEFIRSEVLPFYGN
THTTSSITGLQSTCFRAEARQIIAQAVNAKVTGRAAEDVVLFAGSGATAA
VTKLVAALGLHRPPPPGGLRPVVLVGPHEHHSNLLPWRESCAEVVAVAEA
SSGGIDLADLERRLRT
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mRNA from alignment at P-wetherbeei_contig13867:71..568-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13867.1.1 ID=mRNA_P-wetherbeei_contig13867.1.1|Name=mRNA_P-wetherbeei_contig13867.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig13867:71..568- (Phaeothamnion wetherbeei SAG_119_79)
GTCCGGGTCAACCTCATCGGACGGCTGTCGCCCTTCACTACTCCTTTCGG CCAGCGGCCGCTGGTTTACGCGGACTGGACGGCCACGGGAAGGCCGCTGC GTGTGATCGAGGAGTTCATCAGGAGCGAAGTCCTTCCTTTCTACGGCAAC ACGCACACCACCAGCTCCATCACGGGCTTGCAGAGTACCTGCTTCCGCGC CGAGGCGCGCCAGATCATCGCTCAGGCCGTCAACGCCAAGGTGACGGGCC GCGCCGCCGAAGACGTCGTCCTCTTCGCCGGCAGCGGCGCCACCGCCGCC GTGACCAAGCTCGTGGCGGCACTGGGCCTCCACCGCCCGCCGCCGCCCGG CGGCCTCCGCCCGGTCGTCCTCGTCGGCCCGCACGAGCACCATTCCAACC TGCTGCCGTGGCGCGAGAGCTGCGCCGAGGTCGTCGCCGTCGCCGAGGCG TCGAGCGGTGGCATCGACCTCGCCGACTTGGAGCGGCGCCTGCGGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13867:71..568-

>mRNA_P-wetherbeei_contig13867.1.1 ID=mRNA_P-wetherbeei_contig13867.1.1|Name=mRNA_P-wetherbeei_contig13867.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig13867:71..568- (Phaeothamnion wetherbeei SAG_119_79)
GTCCGGGTCAACCTCATCGGACGGCTGTCGCCCTTCACTACTCCTTTCGG
CCAGCGGCCGCTGGTTTACGCGGACTGGACGGCCACGGGAAGGCCGCTGC
GTGTGATCGAGGAGTTCATCAGGAGCGAAGTCCTTCCTTTCTACGGCAAC
ACGCACACCACCAGCTCCATCACGGGCTTGCAGAGTACCTGCTTCCGCGC
CGAGGCGCGCCAGATCATCGCTCAGGCCGTCAACGCCAAGGTGACGGGCC
GCGCCGCCGAAGACGTCGTCCTCTTCGCCGGCAGCGGCGCCACCGCCGCC
GTGACCAAGCTCGTGGCGGCACTGGGCCTCCACCGCCCGCCGCCGCCCGG
CGGCCTCCGCCCGGTCGTCCTCGTCGGCCCGCACGAGCACCATTCCAACC
TGCTGCCGTGGCGCGAGAGCTGCGCCGAGGTCGTCGCCGTCGCCGAGGCG
TCGAGCGGTGGCATCGACCTCGCCGACTTGGAGCGGCGCCTGCGGACG
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