mRNA_P-wetherbeei_contig13864.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13864.1.1
Unique NamemRNA_P-wetherbeei_contig13864.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13864.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13864contigP-wetherbeei_contig13864:333..1240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size908
Hectar predicted targeting categorymitochondrion
Exons1
Cds size540
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185999.6164262-UTR-P-wetherbeei_contig13864:332..4601683185999.6164262-UTR-P-wetherbeei_contig13864:332..460Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13864 333..460 -
1683185999.6362252-UTR-P-wetherbeei_contig13864:1000..12401683185999.6362252-UTR-P-wetherbeei_contig13864:1000..1240Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13864 1001..1240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185999.6267793-CDS-P-wetherbeei_contig13864:460..10001683185999.6267793-CDS-P-wetherbeei_contig13864:460..1000Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13864 461..1000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13864.1.1prot_P-wetherbeei_contig13864.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13864 461..1000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13864.1.1

>prot_P-wetherbeei_contig13864.1.1 ID=prot_P-wetherbeei_contig13864.1.1|Name=mRNA_P-wetherbeei_contig13864.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
MRRGLFFALCRFARDKANFFRFAAFSSRTVSIPPRPASLLAAHSTWSPCA
HQLGQAASGADMDYELECRTVPPGPRPLVHLRAARPSTRPRPEKDSILSR
LELVRRCSAASELCRRRCLACSGGGGDCGGDCGFGGGAFDDGSSVGGGGR
SDGGGGGLGCDERRGGCDSDGGDCRLDRR*
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mRNA from alignment at P-wetherbeei_contig13864:333..1240-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13864.1.1 ID=mRNA_P-wetherbeei_contig13864.1.1|Name=mRNA_P-wetherbeei_contig13864.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=908bp|location=Sequence derived from alignment at P-wetherbeei_contig13864:333..1240- (Phaeothamnion wetherbeei SAG_119_79)
GGGCTGTCTCGCCCAAGCGTTGGGGTGGCGGATGCGTGCCTTCGTTGATA
CGTAGTAAGAACGGGAGAGGGCGAGCGGACGGCCACCGGTAAACCAATGT
TTGGGGACGAAAAACGGAAGATTGACGAGGGTTAAAAGTGGAATATTTGT
TTCGAGCGGTTGTTTCCGACTTCGCCGCGGCTGAACATTGCAGCATGCTT
GACACGTTTTTTAGCTGTTCCACGGCTTCGTGCTGTGCGAATGCGCCGTG
GACTTTTCTTCGCGCTTTGCCGCTTTGCCCGAGATAAAGCCAACTTCTTT
AGATTCGCTGCCTTCTCCTCTCGCACCGTTTCCATTCCTCCCCGGCCCGC
TTCCCTCCTCGCTGCTCACAGCACCTGGTCGCCGTGCGCTCACCAGCTCG
GGCAGGCTGCCTCCGGAGCTGACATGGACTACGAGTTGGAATGCCGCACT
GTGCCACCTGGCCCGCGTCCTCTCGTCCACTTGAGAGCGGCGCGGCCATC
GACCCGCCCGCGCCCCGAGAAGGACTCGATTTTGAGCCGGCTTGAACTCG
TCCGCCGCTGCTCGGCTGCAAGTGAGCTTTGCCGCCGGCGATGCTTGGCA
TGCTCTGGCGGCGGCGGCGACTGTGGCGGCGATTGCGGCTTTGGCGGCGG
TGCCTTTGACGACGGTAGCTCCGTTGGCGGCGGGGGTCGTAGCGACGGCG
GCGGCGGCGGCCTTGGCTGTGATGAAAGGAGGGGCGGCTGTGACAGCGAC
GGCGGCGATTGCCGTCTAGACCGGCGGTGACGGCAATGGTGGCGGTAAAG
GCTGCGCCAACAGCAGTTTGAAGCGTGAGAAGAACAGATTCGAAACGGCT
GTGTGGTAGGGCACAGCGTCCCGCGCACGGGAAGGAATGGTGACATTGTT
GAATGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13864:333..1240-

>mRNA_P-wetherbeei_contig13864.1.1 ID=mRNA_P-wetherbeei_contig13864.1.1|Name=mRNA_P-wetherbeei_contig13864.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig13864:333..1240- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCGTGGACTTTTCTTCGCGCTTTGCCGCTTTGCCCGAGATAAAGC
CAACTTCTTTAGATTCGCTGCCTTCTCCTCTCGCACCGTTTCCATTCCTC
CCCGGCCCGCTTCCCTCCTCGCTGCTCACAGCACCTGGTCGCCGTGCGCT
CACCAGCTCGGGCAGGCTGCCTCCGGAGCTGACATGGACTACGAGTTGGA
ATGCCGCACTGTGCCACCTGGCCCGCGTCCTCTCGTCCACTTGAGAGCGG
CGCGGCCATCGACCCGCCCGCGCCCCGAGAAGGACTCGATTTTGAGCCGG
CTTGAACTCGTCCGCCGCTGCTCGGCTGCAAGTGAGCTTTGCCGCCGGCG
ATGCTTGGCATGCTCTGGCGGCGGCGGCGACTGTGGCGGCGATTGCGGCT
TTGGCGGCGGTGCCTTTGACGACGGTAGCTCCGTTGGCGGCGGGGGTCGT
AGCGACGGCGGCGGCGGCGGCCTTGGCTGTGATGAAAGGAGGGGCGGCTG
TGACAGCGACGGCGGCGATTGCCGTCTAGACCGGCGGTGA
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