mRNA_P-wetherbeei_contig13852.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13852.1.1
Unique NamemRNA_P-wetherbeei_contig13852.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13852.1.1 vs. uniprot
Match: UPI001986863B (VOC family protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI001986863B)

HSP 1 Score: 230 bits (586), Expect = 2.270e-71
Identity = 120/281 (42.70%), Postives = 158/281 (56.23%), Query Frame = 1
Query:    7 SLDHLGAIAPDLASGAARWEKLGFTLSPVSRQSGRMPDRNEEGPWATANRCAILSKGYLELIGVVDPAAYNPWTKFISRFEGLHLLALRVPDADAAYAGIAARTPTFNPPVQRARKLDVDGAEETMRFRNIFSCDEAYPEGRYIVLEHQTPEFLWQPRYQDHPNGAIALEAALVCADDIQAQRERLATVTGIQPFERADGTLAFAPAGGGTIELHRTEAFSSRYGWVPAERPAFAGVEVRFTDRDRAARHMEGNGVPVSKHGDEWFVGPAHTNGFLLRLTR 849
            +LDH G IA DL   A  WE+LGFTLSP+S Q G +P      PWAT+NRCA+  +GYLELIGV    A++PW  F++R  GLH+LALR  DAD AYA + A  P    PVQR R++DVDG    +RFRNIFS D   PE RYI++EHQTPE LWQ RY  H N A++L    +  +D      R+             G L  AP     I +    AF+ +YG+ P   P    + V   D   A   +   G+PV++     ++ P +T GF+LR+ +
Sbjct:   11 TLDHCGCIAADLNRAAFAWERLGFTLSPLSPQRGAVPGLPGMQPWATSNRCALFERGYLELIGVTRREAHDPWASFLTRGAGLHILALRCDDADTAYAALEADAPFLQSPVQREREVDVDGHARMLRFRNIFSRDVDCPEARYILIEHQTPELLWQRRYLTHENSALSLHDVTLVTEDCTELAGRI-------------GALGAAPG----ITIVDAAAFTRQYGYRPQRLPGLHALGVGVRDLRLALGLLAARGIPVTRSEKAVWIAPQYTGGFVLRMLQ 274          
BLAST of mRNA_P-wetherbeei_contig13852.1.1 vs. uniprot
Match: A0A7X3YC47_9PROT (VOC family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7X3YC47_9PROT)

HSP 1 Score: 226 bits (577), Expect = 4.030e-70
Identity = 131/280 (46.79%), Postives = 161/280 (57.50%), Query Frame = 1
Query:    7 SLDHLGAIAPDLASGAARWEKLGFTLSPVSRQSGRMPDRNEEGPWATANRCAILSKGYLELIGVVDPAAYNPWTKFISRFEGLHLLALRVPDADAAYAGIAARTPTFNPPVQRARKLDVDGAEETMRFRNIFSCDEAYPEGRYIVLEHQTPEFLWQPRYQDHPNGAIALEAALVCADDIQAQRERLATVTGIQPFERADGTLAFAPAGGGTIELHRTEAFSSRYGWVPAERPAFAGVEVRFTDRDRAARHMEGNGVPVSKHG-DEWFVGPAHTNGFLLRL 843
            SLDH G +  DL +GAA WE+LGF LSP + Q G +P  +   PWATANRCA+  +GYLELIG+  P  +NPW  F++R EG+H+ A R   AD A+ G+AA+   F PPVQRAR          MRFRNIFS D ++PEGR IV+EHQTPE LW+P   +HPNGA AL   L  +D       RLA+         AD     A + G    +   EA       VP   P  AG  + F D DRA R MEGNGVPV +      FVG AH NG ++ L
Sbjct:    4 SLDHTGQMRADLDAGAAAWERLGFLLSPETPQQGAVPGASGMQPWATANRCALFREGYLELIGIRAPDRFNPWAHFMARHEGIHIAAFRCDSADEAWPGMAAQG--FAPPVQRARSTPTG----EMRFRNIFSEDASWPEGRIIVIEHQTPEILWRPELLEHPNGARALRQCLFVSDGPDDLSARLASFG-------ADPAGCAALSAGDFAAMFPGEA-------VPPL-PCMAGHVIAFADLDRAIRLMEGNGVPVGQDSLGRAFVGRAHNNGAVMAL 262          
BLAST of mRNA_P-wetherbeei_contig13852.1.1 vs. uniprot
Match: A0A2E4Y128_9PROT (Glyoxalase-like_dom domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4Y128_9PROT)

HSP 1 Score: 224 bits (572), Expect = 4.250e-69
Identity = 114/281 (40.57%), Postives = 160/281 (56.94%), Query Frame = 1
Query:    7 SLDHLGAIAPDLASGAARWEKLGFTLSPVSRQSGRMPDRNEEGPWATANRCAILSKGYLELIGVVDPAAYNPWTKFISRFEGLHLLALRVPDADAAYAGIAARTPTFNPPVQRARKLDVDGAEETMRFRNIFSCDEAYPEGRYIVLEHQTPEFLWQPRYQDHPNGAIALEAALVCADDIQAQRERLATVTGIQPFERADGTLAFAPAGGGTIELHRTEAFSSRY-GWVPAERPAFAGVEVRFTDRDRAARHMEGNGV-PVSKHGDEWFVGPAHTNGFLLRL 843
            SLDH+G +  DL +  ARWE+LGF LS  S Q G++P  +E  PWA++N CA+  +GYLELIG+ +P  +NPW++F+ RFEG H+ ALR  + + AY  ++ R   F+PP+QR R           RFRNIFS D+ YPEGRYI++EHQTPE +WQ      PNGAI L   + CAD      +RL+ ++G    +   G      +GGG++ +    AF  RY G     RPA A   +R  D       +  NGV P+ +  +  +V P   NG ++  
Sbjct:    8 SLDHVGFMVRDLDAAVARWERLGFLLSRRSPQMGKVPGESEMAPWASSNHCAMFEQGYLELIGITNPENFNPWSRFLDRFEGPHITALRCENGEEAYKALSGRIDHFDPPLQRLRNAPYGDGVREFRFRNIFSQDDHYPEGRYIIIEHQTPEVIWQDELMVQPNGAIELAELVFCADTGDDLLDRLSRISGDDALDTEAGGF-IELSGGGSLSVLSEAAFGRRYEGASIPPRPAVAAAVIRVKDLGALKSLLADNGVTPIIRSPNSLWVSPEDGNGAVIEF 287          
BLAST of mRNA_P-wetherbeei_contig13852.1.1 vs. uniprot
Match: A0A1Z9SL02_9PROT (Glyoxalase-like_dom domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TMED256 TaxID=1986865 RepID=A0A1Z9SL02_9PROT)

HSP 1 Score: 223 bits (569), Expect = 1.170e-68
Identity = 117/282 (41.49%), Postives = 158/282 (56.03%), Query Frame = 1
Query:    7 SLDHLGAIAPDLASGAARWEKLGFTLSPVSRQSGRMPDRNEEGPWATANRCAILSKGYLELIGVVDPAAYNPWTKFISRFEGLHLLALRVPDADAAYAGIAARTPTFNPPVQRARKLDVDGAEETMRFRNIFSCDEAYPEGRYIVLEHQTPEFLWQPRYQDHPNGAIALEAALVCADDIQAQRERLATVTGIQPFERADGTLAFAPAGGGTIELHRTEAFSSRYGWVPAE-RPAFAGVEVRFTDRDRAARHMEGNGVPV--SKHGDEWFVGPAHTNGFLLRL 843
            SLDH+G +  DL +G  RW KLGF LS  S Q G++P  +E  PWAT+N CA+  +GYLELIGV +P  +NPWT F+ +FEG H+ ALR   AD  YA ++ R   F+PP+QR R       E   +FRNIFS D  +PEGRYI++EHQTPE +WQ      PNGA +L   + CAD      +RL+ ++G +  + A+G +     GGG + +     F+ RY   P   +PA A   +        A  +E NGV    S     W VGP   NG ++  
Sbjct:    5 SLDHVGFMLCDLDAGVERWRKLGFKLSRRSAQMGKVPGESEMAPWATSNHCAMFDRGYLELIGVTNPENFNPWTAFLDKFEGPHITALRCEVADRTYAALSGRIDHFDPPLQRLRNAPYGDGERPFKFRNIFSQDAHFPEGRYIIIEHQTPEVIWQEELMVQPNGAKSLIELVFCADPQSGLLDRLSXISGERSSD-AEGRVLLELGGGGQLSMIDAAGFAVRYPGAPEPLQPAVAAAVIGVESLVHLAAMLEENGVLFHRSDRASLW-VGPEEANGAVIEF 284          
BLAST of mRNA_P-wetherbeei_contig13852.1.1 vs. uniprot
Match: A0A2S6U235_9PROT (VOC domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium MarineAlpha4_Bin1 TaxID=2013074 RepID=A0A2S6U235_9PROT)

HSP 1 Score: 220 bits (560), Expect = 1.350e-68
Identity = 102/191 (53.40%), Postives = 129/191 (67.54%), Query Frame = 1
Query:    7 SLDHLGAIAPDLASGAARWEKLGFTLSPVSRQSGRMPDRNEEGPWATANRCAILSKGYLELIGVVDPAAYNPWTKFISRFEGLHLLALRVPDADAAYAGIAARTPTFNPPVQRARKLDVDGAEETMRFRNIFSCDEAYPEGRYIVLEHQTPEFLWQPRYQDHPNGAIALEAALVCADDIQAQRERLATVTG 579
            SLDH+G +  DL +GAA W +LGF LSP S Q GR+P +    PWATAN CA+  +GYLELIGVV    +NPW  F+ RFEG+H++A R  DADAAYA + AR   F+PP+QR R    DG     RFRN+FS D+ +PEGR+IV+EHQTPE +WQ     H NGA+A+E  + CAD   + R RLA + G
Sbjct:    5 SLDHVGFMVRDLDAGAALWARLGFRLSPRSPQMGRVPGQLAMAPWATANHCAMFQRGYLELIGVVQADNFNPWDAFLDRFEGIHIIAFRCDDADAAYAVLTARIGGFDPPLQRQRNAPFDGGTRLFRFRNVFSQDDRFPEGRFIVIEHQTPEVIWQDALMTHSNGAVAIEEVVFCADPPASTRRRLAGIIG 195          
BLAST of mRNA_P-wetherbeei_contig13852.1.1 vs. uniprot
Match: A0A2E4H220_9PROT (Glyoxalase-like_dom domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4H220_9PROT)

HSP 1 Score: 221 bits (562), Expect = 1.250e-67
Identity = 112/281 (39.86%), Postives = 163/281 (58.01%), Query Frame = 1
Query:    7 SLDHLGAIAPDLASGAARWEKLGFTLSPVSRQSGRMPDRNEEGPWATANRCAILSKGYLELIGVVDPAAYNPWTKFISRFEGLHLLALRVPDADAAYAGIAARTPTFNPPVQRARKLDVDGAEETMRFRNIFSCDEAYPEGRYIVLEHQTPEFLWQPRYQDHPNGAIALEAALVCADDIQAQRERLATVTGIQPFERADGTLAFAPAGGGTIELHRTEAFSSRY-GWVPAERPAFAGVEVRFTDRDRAARHMEGNGV-PVSKHGDEWFVGPAHTNGFLLRL 843
            SLDH+G +  +L + AARWE+LGF  S  SRQ G++P +++  PWA++N C +  +GYLELIG+ +  ++NPW++F++RFEG H+ ALR  D + AY  ++ R   F+PP+QR RK      E   RFRNIFS D+ + EGRYI++EHQTPE +WQ      PNGA+ L   + CAD      +RL+ ++G +  E   G       GGG++ +    AF  RY G +   RPA A   +R  +       +  NGV PV +     +V P   NG ++  
Sbjct:    5 SLDHVGFMVRNLDAAAARWERLGFLXSRRSRQMGKVPGKSDMAPWASSNHCVMFEQGYLELIGITNSESFNPWSQFLNRFEGPHITALRCKDGEKAYEALSRRIDHFDPPLQRLRKAPFGEGEREFRFRNIFSQDDHFSEGRYIIIEHQTPEVIWQDDLMXQPNGAVELVELVFCADVDDDLLDRLSRISGEEALETEAGGF-IELGGGGSLSVLSEAAFCRRYEGALAPMRPAVAAAVIRVKNLGVLESLLNANGVQPVFRSPMSLWVNPEDGNGAVIEF 284          
BLAST of mRNA_P-wetherbeei_contig13852.1.1 vs. uniprot
Match: A0A2E5PMX8_9PROT (Glyoxalase-like_dom domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PMX8_9PROT)

HSP 1 Score: 219 bits (559), Expect = 3.320e-67
Identity = 117/283 (41.34%), Postives = 155/283 (54.77%), Query Frame = 1
Query:    7 SLDHLGAIAPDLASGAARWEKLGFTLSPVSRQSGRMPDRNEEGPWATANRCAILSKGYLELIGVVDPAAYNPWTKFISRFEGLHLLALRVPDADAAYAGIAARTPTFNPPVQRARKLDVDGAEETMRFRNIFSCDEAYPEGRYIVLEHQTPEFLWQPRYQDHPNGAIALEAALVCADDIQAQRERLATVTGIQPFERADGTLAFAPAGGGTIELHRTEAFSSRYGWVPA-ERPAFAGVEVRFTDRDRAARHMEGNGVPVSKHGDEWFVGPAH-TNGFLLRLTR 849
            SLDH+G +  DL +G  RW  LGF ++  S Q G  PD     PWATAN C +  +GYLELIG+ DPA +NPWT F++RFEG+H+ A R  +AD AYA ++ R   F+PP+QR R           RFRNIFS D  +PEGR+IV+EHQTPE +WQP    HPNGA+A E  + CA+       RL  + GI     AD    + P GG    L  T+ ++ R+G   A + P  A V V   D  +    +   G+   +  D     PA   NG ++   R
Sbjct:    7 SLDHVGFMVRDLDAGEKRWRNLGFQVAARSPQMGATPDGATMAPWATANHCVMFERGYLELIGITDPAKHNPWTDFLNRFEGIHITAFRCLEADPAYAALSQRIDGFDPPLQRRRDAPFGDGTREFRFRNIFSQDALFPEGRFIVIEHQTPEVIWQPSLIAHPNGAVAFEEVVFCAEPCSPTLGRLEAIVGIA----ADDGCIYLPGGGVATVLSPTD-YAVRFGGAMAPDLPCAAAVVVGVDDLTKPRTCLAEAGIVPEQTADGTLWVPAEQANGGVVAFKR 284          
BLAST of mRNA_P-wetherbeei_contig13852.1.1 vs. uniprot
Match: A0A6N9BHC4_9PROT (VOC family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N9BHC4_9PROT)

HSP 1 Score: 218 bits (555), Expect = 1.070e-66
Identity = 127/279 (45.52%), Postives = 154/279 (55.20%), Query Frame = 1
Query:   10 LDHLGAIAPDLASGAARWEKLGFTLSPVSRQSGRMPDRNEEGPWATANRCAILSKGYLELIGVVDPAAYNPWTKFISRFEGLHLLALRVPDADAAYAGIAARTPTFNPPVQRARKLDVDGAEETMRFRNIFSCDEAYPEGRYIVLEHQTPEFLWQPRYQDHPNGAIALEAALVCADDIQAQRERLATVTGIQPFERADGTLAFAPAGGGTIELHRTEAFSSRYGWVPAERPAFAGVEVRFTDRDRAARHMEGNGVPVSKHG-DEWFVGPAHTNGFLLRL 843
            LDH G +  DL +GAA WE+LGF LSP + Q G +P      PWATANRCA+  +GYLELIG+  P  +NPW  F++R EG+H+ A R   AD A+ G+AA+   F PPV+RAR          +RFRNIFS D  +PEGR IV+EHQTPE LW+P   +HPNGA AL   L  +D       RL+       F       A  PAG         EAF    G      P  AG  + F D DRA   MEGNGVPV        FVG AH NG ++ L
Sbjct:    5 LDHTGQMRADLDAGAAAWERLGFLLSPETPQQGAVPGTGGMQPWATANRCALFHEGYLELIGIRAPDRFNPWAHFMARHEGVHIAAFRCASADEAWPGMAAQG--FAPPVRRARSTPAG----EIRFRNIFSEDARWPEGRIIVIEHQTPEILWRPELLEHPNGASALRQCLFVSDRPDELAARLSA------FGADPAGYAVLPAG------DFAEAFP---GEAAPPFPCMAGQVIAFADLDRAICLMEGNGVPVGHDSLGRTFVGRAHNNGAVMVL 262          
BLAST of mRNA_P-wetherbeei_contig13852.1.1 vs. uniprot
Match: A0A2S6TWC0_9PROT (Glyoxalase-like_dom domain-containing protein n=1 Tax=Alphaproteobacteria bacterium MarineAlpha4_Bin2 TaxID=2013075 RepID=A0A2S6TWC0_9PROT)

HSP 1 Score: 213 bits (542), Expect = 1.400e-64
Identity = 119/283 (42.05%), Postives = 154/283 (54.42%), Query Frame = 1
Query:    7 SLDHLGAIAPDLASGAARWEKLGFTLSPVSRQSGRMPDRNEEGPWATANRCAILSKGYLELIGVVDPAAYNPWTKFISRFEGLHLLALRVPDADAAYAGIAARTPTFNPPVQRARKLDVDGAEETMRFRNIFSCDEAYPEGRYIVLEHQTPEFLWQPRYQDHPNGAIALEAALVCADDIQAQRERLATVTGIQPFERADGTLAFAP-AGGGTIELHRTEAFSSRY-GWVPAERPAFAGVEVRFTDRDRAARHMEGNGVPV--SKHGDEWFVGPAHTNGFLLRL 843
            SLDH+G +  DL +G  +WE+LGF LS  S Q G +P +    PWAT+N CA+  +GYLELIGV +   +NPW +F+ RFEG H+ ALR  DADAAYA ++ R   F+PP+QR R       E   +FRNIFS DE YPEGR+IV+EHQTPE +WQ    + PNGAI L   +  A+      ERL  ++G       DG +      GGG + +   + F   Y G     RP  A V V        A  +  NGV V  S     W V P   NG ++  
Sbjct:    5 SLDHVGFMVWDLDAGVTQWERLGFRLSRRSPQMGNVPGKEGMAPWATSNSCAMFREGYLELIGVTNRDNFNPWARFLDRFEGPHITALRCQDADAAYAALSKRIDNFDPPLQRLRNAPFGDGERPFKFRNIFSQDEHYPEGRFIVIEHQTPEVIWQEELMNQPNGAIRLCEVVFAAEPTDNTIERLQRISG---GIAEDGNIGLIKLGGGGVLSVVSPDEFLDFYPGAGEPLRPMVAAVVVGVKHLKETADLLSTNGVSVWESSRPSVW-VRPTEANGAVIEF 283          
BLAST of mRNA_P-wetherbeei_contig13852.1.1 vs. uniprot
Match: UPI001EE0615D (VOC family protein n=1 Tax=unclassified Xanthobacter TaxID=2623496 RepID=UPI001EE0615D)

HSP 1 Score: 157 bits (398), Expect = 3.080e-43
Identity = 96/284 (33.80%), Postives = 139/284 (48.94%), Query Frame = 1
Query:    7 SLDHLGAIAPDLASGAARWEKLGFTLSPVSRQSGRMPDRNEEGPWATANRCAILSKGYLELIGVVDPAAYNPWTKFISRFEGLHLLALRVPDADAAYAGIAARTPTFNPPVQRARKLDVDGAEETMRFRNIFSCDEAYPEGRYIVLEHQTPEFLWQPRYQDHPNGAIALEAA--LVCADDIQAQRERLATVTGIQPFERADGTLAFAPAGGGTIELHRTEAFSSRYGWVPAERPAFAGVEVRFTDRDRAARHMEGNGVPVSKHGD-EWFVGPAHTNGFLLRLTR 849
            +LDH+G   PDL +G   +  LGF L+  S  SG +       PW + N CA+L +GY+E++G+VD   ++     + R+EG H++ALR PDADA++A           P    R+LD +G  + + FRNI+     Y + R+I +EHQTP+ LW+P   DHPN A+AL +   +V  +D++A R RL     + P +     L    A   T  L             P   P  AG EV   D D  A  +  NGVP ++       V PA   G  L   +
Sbjct:    7 TLDHVGIAVPDLEAGRRTYAALGFHLTDRSMHSGALEPGGPVEPWGSGNHCAMLRRGYIEVLGLVDATLHSTVKHLLKRYEGAHIVALRTPDADASFAAYQQAGVPARAPAALQRQLD-EG--QVLGFRNIYFEGPDYAQARFITIEHQTPDLLWRPDLLDHPNTAVALRSVTLVVAPEDVEAIRARLGRAFPLVPAD----ALRVVGADTWTAPL-------------PGAVPCVAGFEVAVRDLDACAALLTANGVPHARAASGALVVPPAAAAGAQLTFVQ 270          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13852.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001986863B2.270e-7142.70VOC family protein n=1 Tax=Proteobacteria bacteriu... [more]
A0A7X3YC47_9PROT4.030e-7046.79VOC family protein n=1 Tax=Alphaproteobacteria bac... [more]
A0A2E4Y128_9PROT4.250e-6940.57Glyoxalase-like_dom domain-containing protein n=1 ... [more]
A0A1Z9SL02_9PROT1.170e-6841.49Glyoxalase-like_dom domain-containing protein n=1 ... [more]
A0A2S6U235_9PROT1.350e-6853.40VOC domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A2E4H220_9PROT1.250e-6739.86Glyoxalase-like_dom domain-containing protein n=1 ... [more]
A0A2E5PMX8_9PROT3.320e-6741.34Glyoxalase-like_dom domain-containing protein n=1 ... [more]
A0A6N9BHC4_9PROT1.070e-6645.52VOC family protein n=1 Tax=Alphaproteobacteria bac... [more]
A0A2S6TWC0_9PROT1.400e-6442.05Glyoxalase-like_dom domain-containing protein n=1 ... [more]
UPI001EE0615D3.080e-4333.80VOC family protein n=1 Tax=unclassified Xanthobact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13852contigP-wetherbeei_contig13852:529..1380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1380394.JADL01000023_gene51
PFAMsGlyoxalase_3
Model size852
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.17e-44
EggNOG OGsCOG3185@1|root,COG3185@2|Bacteria,1QXYZ@1224|Proteobacteria,2TY40@28211|Alphaproteobacteria
DescriptionGlyoxalase-like domain
Cds size852
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185999.3558886-CDS-P-wetherbeei_contig13852:528..13801683185999.3558886-CDS-P-wetherbeei_contig13852:528..1380Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13852 529..1380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13852.1.1prot_P-wetherbeei_contig13852.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13852 529..1380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13852.1.1

>prot_P-wetherbeei_contig13852.1.1 ID=prot_P-wetherbeei_contig13852.1.1|Name=mRNA_P-wetherbeei_contig13852.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=284bp
MASLDHLGAIAPDLASGAARWEKLGFTLSPVSRQSGRMPDRNEEGPWATA
NRCAILSKGYLELIGVVDPAAYNPWTKFISRFEGLHLLALRVPDADAAYA
GIAARTPTFNPPVQRARKLDVDGAEETMRFRNIFSCDEAYPEGRYIVLEH
QTPEFLWQPRYQDHPNGAIALEAALVCADDIQAQRERLATVTGIQPFERA
DGTLAFAPAGGGTIELHRTEAFSSRYGWVPAERPAFAGVEVRFTDRDRAA
RHMEGNGVPVSKHGDEWFVGPAHTNGFLLRLTR*
back to top

mRNA from alignment at P-wetherbeei_contig13852:529..1380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13852.1.1 ID=mRNA_P-wetherbeei_contig13852.1.1|Name=mRNA_P-wetherbeei_contig13852.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=852bp|location=Sequence derived from alignment at P-wetherbeei_contig13852:529..1380+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTCGCTCGACCACCTCGGCGCGATAGCGCCTGACCTCGCCTCCGG CGCCGCACGCTGGGAGAAGCTCGGCTTCACGCTGTCCCCGGTCAGCAGGC AGAGCGGCCGTATGCCGGACCGCAACGAGGAGGGGCCGTGGGCGACGGCC AACCGTTGCGCGATCCTGAGCAAGGGCTACCTCGAACTCATCGGCGTCGT CGATCCGGCCGCGTACAACCCGTGGACTAAATTCATTTCGCGCTTCGAGG GTCTCCACCTGCTCGCACTGCGCGTTCCGGATGCGGATGCCGCCTATGCC GGAATCGCTGCGCGCACTCCTACGTTCAACCCTCCGGTGCAGCGCGCCCG CAAGCTCGATGTCGATGGCGCGGAAGAAACAATGCGCTTCAGGAACATCT TCAGCTGCGATGAAGCGTACCCGGAAGGCCGCTACATCGTCCTCGAGCAC CAGACGCCGGAGTTCCTCTGGCAACCGCGCTACCAGGACCACCCGAACGG TGCCATCGCCCTGGAGGCCGCCCTGGTTTGCGCCGACGACATCCAGGCCC AGCGCGAGCGCCTTGCGACAGTCACCGGCATCCAGCCGTTCGAACGGGCG GATGGAACACTCGCCTTCGCCCCCGCGGGCGGAGGCACTATAGAGCTTCA CCGCACGGAGGCCTTCAGCTCGCGTTATGGCTGGGTGCCCGCGGAGCGCC CGGCATTTGCGGGCGTCGAAGTGCGCTTCACCGACCGGGACCGCGCAGCC AGGCACATGGAAGGCAATGGCGTCCCGGTAAGCAAGCACGGCGACGAATG GTTCGTCGGCCCCGCTCACACCAACGGATTCCTCCTGAGGCTGACCCGAT GA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13852:529..1380+

>mRNA_P-wetherbeei_contig13852.1.1 ID=mRNA_P-wetherbeei_contig13852.1.1|Name=mRNA_P-wetherbeei_contig13852.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=852bp|location=Sequence derived from alignment at P-wetherbeei_contig13852:529..1380+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTCGCTCGACCACCTCGGCGCGATAGCGCCTGACCTCGCCTCCGG
CGCCGCACGCTGGGAGAAGCTCGGCTTCACGCTGTCCCCGGTCAGCAGGC
AGAGCGGCCGTATGCCGGACCGCAACGAGGAGGGGCCGTGGGCGACGGCC
AACCGTTGCGCGATCCTGAGCAAGGGCTACCTCGAACTCATCGGCGTCGT
CGATCCGGCCGCGTACAACCCGTGGACTAAATTCATTTCGCGCTTCGAGG
GTCTCCACCTGCTCGCACTGCGCGTTCCGGATGCGGATGCCGCCTATGCC
GGAATCGCTGCGCGCACTCCTACGTTCAACCCTCCGGTGCAGCGCGCCCG
CAAGCTCGATGTCGATGGCGCGGAAGAAACAATGCGCTTCAGGAACATCT
TCAGCTGCGATGAAGCGTACCCGGAAGGCCGCTACATCGTCCTCGAGCAC
CAGACGCCGGAGTTCCTCTGGCAACCGCGCTACCAGGACCACCCGAACGG
TGCCATCGCCCTGGAGGCCGCCCTGGTTTGCGCCGACGACATCCAGGCCC
AGCGCGAGCGCCTTGCGACAGTCACCGGCATCCAGCCGTTCGAACGGGCG
GATGGAACACTCGCCTTCGCCCCCGCGGGCGGAGGCACTATAGAGCTTCA
CCGCACGGAGGCCTTCAGCTCGCGTTATGGCTGGGTGCCCGCGGAGCGCC
CGGCATTTGCGGGCGTCGAAGTGCGCTTCACCGACCGGGACCGCGCAGCC
AGGCACATGGAAGGCAATGGCGTCCCGGTAAGCAAGCACGGCGACGAATG
GTTCGTCGGCCCCGCTCACACCAACGGATTCCTCCTGAGGCTGACCCGAT
GA
back to top