mRNA_P-wetherbeei_contig13841.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13841.2.2
Unique NamemRNA_P-wetherbeei_contig13841.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13841.2.2 vs. uniprot
Match: A0A6H5JKS8_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKS8_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 3.820e-40
Identity = 88/215 (40.93%), Postives = 102/215 (47.44%), Query Frame = 1 
Query:   10 GDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLERALRMRMVDTAGGPLSGXXXXXXXXXXXXXXSRAINYHFLNRHLLWDSFTKMLLFLAPLIDWGAARRQEEG-------ESAAEGEXXXXXXXXXXXXXXXXXXSGRPAA-----------CGACGRAPASMPYATDCGHVFCYFCLRAACARDPNYACAICGAHFAASRRWVVPR 600
            G  R   W  L R E  +R  W++NLLLFL++G Y TP++R +RMRMV     P                  R INY FLNR LLWD + KM   +APLI+WG  RR   G       E+ A G                      PAA           C  CG  PA  PY T CGHVFCY+C R AC  DP YAC  CG +FA SRRW  PR
Sbjct:  235 GRARRVAWHVLGRLETLFRLAWMVNLLLFLKSGKYATPVDRLVRMRMVHDRADP----------------GPRPINYQFLNRRLLWDHWAKMAYVVAPLINWGFVRRAVSGGAGRLRREARAFGIFGGSSGGAGRVSARGLGADTAPAAEAAVAEVVLTACAECGANPAKTPYVTGCGHVFCYYCARVACTVDPRYACPRCGEYFATSRRWSQPR 433
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BLAST of mRNA_P-wetherbeei_contig13841.2.2 vs. uniprot
Match: W7TYI4_9STRA (Peroxin-2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYI4_9STRA)

HSP 1 Score: 147 bits (372), Expect = 5.830e-39
Identity = 80/199 (40.20%), Postives = 108/199 (54.27%), Query Frame = 1 
Query:    1 RPDGDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLERALRMRMVDTAGGPLSGXXXXXXXXXXXXXXSRAINYHFLNRHLLWDSFTKMLLFLAPLIDWGAARRQEEG--ESAAEGEXXXXXXXXXXXXXXXXXXSGRPAACGACGRAPASMPYATDCGHVFCYFCLRAACARDPNYACAICGAHFAASRRWV 591
            R  G W+   +RAL RAE+ +R  WL+N L+FLR G+YP+ L+R + MR+V    GP SG              +R IN+ F+NR LLW+ FT++ L + PL+DW   RRQ  G       G       XX          +     C  CG   A  PY TDCGH++CY+CL+ AC +D +++C  CG  FA SRRWV
Sbjct:  249 RGGGQWKRRAYRALTRAESLFRLAWLINFLVFLRVGSYPSLLQRLVGMRLVY---GPSSGGA------------ARNINFQFMNRQLLWEHFTQLALCVVPLVDWDGLRRQVSGLIRQRRAGAWAAGAGXXGGSEFRGAGGADGDMECVVCGEESAQTPYVTDCGHIYCYYCLKTACLQDDSFSCPRCGTFFATSRRWV 432
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BLAST of mRNA_P-wetherbeei_contig13841.2.2 vs. uniprot
Match: A0A1D2A1X3_AUXPR (Pex2_Pex12 domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A1X3_AUXPR)

HSP 1 Score: 101 bits (252), Expect = 5.460e-22
Identity = 69/190 (36.32%), Postives = 87/190 (45.79%), Query Frame = 1 
Query:    7 DGDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLERALRMRMVDTAGGPLSGXXXXXXXXXXXXXXSRAINYHFLNRHLLWDSFTKMLLFLAPLIDWGAARRQEEG---ESAAEGEXXXXXXXXXXXXXXXXXXSGRPAACGACGRA-PASMPYAT-DCGHVFCYFCLRAACARDPNYACAICG 561
            DG WR   W+ +RRAE AYR   L+N + FLR G Y T LER +  R V                        RAI+Y +LNR L+W   +++LLF+ PL +  + +R       + AA G                   SGR  ACG CG A P   P A   CGHV CY+CLRA    D    C +CG
Sbjct:  184 DGGWRATAWQVMRRAETAYRLAALVNAIAFLRAGKYRTLLERLIGARPV-----------------YVQTHAPRAISYEYLNRQLVWGELSELLLFVLPLFNLASVKRSLRRLLPQPAARG-----------------GASGRQTACGTCGAAFPLLTPAAALPCGHVHCYYCLRARTQADALCECGVCG 339
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BLAST of mRNA_P-wetherbeei_contig13841.2.2 vs. uniprot
Match: A0A835Z8Z6_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Z6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.390e-21
Identity = 74/184 (40.22%), Postives = 82/184 (44.57%), Query Frame = 1 
Query:   28 VWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLERALRMRMVDTAGGPLSGXXXXXXXXXXXXXXSRAINYHFLNRHLLWDSFTKMLLFLAPLIDWGAARRQEEGESAAEGEXXXXXXXXXXXXXXXXXXSGRPAACGACGRAPASMPYATDCGHVFCYFCLRAACARDPNYACAICGAHFAAS 579
             W  L  A  AYR  WLLN L FLR   YPTPL+RALR+RMV  A    +                R INY FL+R LLW+                             G    XXXXXXXXXXX          C  CG   A  PY  DCGH FCY+C+R  C  D  Y C  CGA FAA+
Sbjct:  108 AWAVLAHAHRAYRVAWLLNCLAFLRGARYPTPLDRALRLRMVAAAAAATAAP--------------RPINYAFLSRRLLWEHAAAXXXXXXXXXXXXXXXXXXXXXXRRLGVRAGXXXXXXXXXXXE-------GGCVECGALRARQPYVADCGHTFCYYCVRVGCEDDAEYGCPACGARFAAA 270
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BLAST of mRNA_P-wetherbeei_contig13841.2.2 vs. uniprot
Match: A0A0L0HLU8_SPIPD (Peroxin-2 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HLU8_SPIPD)

HSP 1 Score: 97.1 bits (240), Expect = 2.190e-20
Identity = 63/191 (32.98%), Postives = 93/191 (48.69%), Query Frame = 1 
Query:    4 PDGDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLERALRMRMVDTAGGPLSGXXXXXXXXXXXXXXSRAINYHFLNRHLLWDSFTKMLLFLAPLIDWGAARRQEEGESAAEGEXXXXXXXXXXXXXXXXXXSGRPAACGACGR--APASM---PYATDCGHVFCYFCLRAACARDPNYACAICG 561
            P+ DWR+ VW  L++AE  YRAL L+N L+FL  G Y + L+R LRMR+V T                     +R +++ F+NR L+W +FT+ LLFL PL++    R +     A  G                         C  C    AP ++   PY T+CGHV+CY+C++ +   D ++ C  CG
Sbjct:  198 PERDWRNRVWTYLQKAENVYRALSLVNFLVFLYNGRYRSLLDRVLRMRLVYTR-----------------REMARQVSFEFMNRQLVWHAFTEFLLFLVPLVN--VERIKNTIIRAISGPVTVDLPDHI---------------CAICHAKDAPKTVVHTPYRTNCGHVYCYYCIKTSIMADHSFPCPRCG 354
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BLAST of mRNA_P-wetherbeei_contig13841.2.2 vs. uniprot
Match: UPI00064503DB (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064503DB)

HSP 1 Score: 94.0 bits (232), Expect = 2.770e-19
Identity = 62/215 (28.84%), Postives = 88/215 (40.93%), Query Frame = 1 
Query:    4 PDGDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLERALRMRMVDTAGGPLSGXXXXXXXXXXXXXXSRAINYHFLNRHLLWDSFTKMLLFLAPLID-------------------WGAARRQEEGESAAEGEXXXXXXXXXXXXXXXXXXSGRPAACGACGRAPASMPYATDCGHVFCYFCLRAACARDPNYACAICGAHFAASRRWV 591
            PD   +  VWR L   E  Y+ L +LN L FL  G Y T + R L MR+V                       SR I++ ++NR L+W  FT+  LF+ PLI+                   +    R ++GE AA                           C  C   P S+PY TDCGH+FCY+C++  C  DP + C  C +  +  +R+ 
Sbjct:  153 PDDSLKKRVWRILNHLETVYKLLSILNFLAFLFDGKYVTLVNRILCMRLV-----------------YAQPSLSRRISFEYMNRQLVWHGFTEFFLFIMPLINIDRIKGFIYRTFIQKPSNMFQQQNRSQQGEDAALAPQLLAPLVLEK--------------CPICFNDPISVPYITDCGHLFCYYCIKTNCMIDPTFTCPRCNSIVSNMKRFT 336
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BLAST of mRNA_P-wetherbeei_contig13841.2.2 vs. uniprot
Match: PEX2_DICDI (Peroxisome biogenesis factor 2 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=PEX2_DICDI)

HSP 1 Score: 93.2 bits (230), Expect = 9.120e-19
Identity = 80/207 (38.65%), Postives = 109/207 (52.66%), Query Frame = 1 
Query:    4 PDGDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLERALRMRMVDTAGGPLSGXXXXXXXXXXXXXXSRAINYHFLNRHLLWDSFTKMLLFLAPLIDWGAAR--------RQEEGESAAEGEXXXXXXXXXXXXXXXXXXSGRPAA--CGACGRAPASMPYATDCGHVFCYFCLRAACARDPNYACAICGAHFAASRRWVV 594
            P  D R   W  L  AE+AY+AL LLN L FL  G Y T + R L MR+V                       SR I++ ++NR L+W  FT+ +LF+ PLI+    +        +   G S+    XXXXXXXXXXXXXXXXXX    A   C  C   P SMPY+ DCGH+FCY+C++ +C  D ++ C  C +  +  +R+ +
Sbjct:  232 PPNDIRKKFWNFLNFAESAYKALALLNFLTFLFNGKYVTLVNRILHMRLV-----------------YAHPTLSRNISFEYMNRLLVWHGFTEFILFIMPLINIDRIKSFLYRLLVKTSFGNSSGXXXXXXXXXXXXXXXXXXXXXXXXMALAKCPICMNDPISMPYSADCGHLFCYYCIKTSCMIDSSFTCPRCNSLISNIKRFSI 421
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BLAST of mRNA_P-wetherbeei_contig13841.2.2 vs. uniprot
Match: A0A4D9D9T6_9STRA (Pex2_Pex12 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9T6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.210e-18
Identity = 49/111 (44.14%), Postives = 67/111 (60.36%), Query Frame = 1 
Query:   10 GDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLERALRMRMVDTAGGPLSGXXXXXXXXXXXXXXSRAINYHFLNRHLLWDSFTKMLLFLAPLIDWGAARRQEEG 342
            G W+   +RAL RAE+ +R  WLLN L+FLR G+YP+ L+R + MR+V    GP SG              +R IN+ F+NR LLW+ FT++ L + PL+DW   RRQ  G
Sbjct:  257 GQWKRRAYRALTRAESLFRLAWLLNFLVFLRVGSYPSLLQRLVGMRLVY---GPSSGGA------------ARNINFQFMNRQLLWEHFTQLALCVVPLVDWDGLRRQVSG 352
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BLAST of mRNA_P-wetherbeei_contig13841.2.2 vs. uniprot
Match: F0ZHQ8_DICPU (Peroxin-2 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZHQ8_DICPU)

HSP 1 Score: 89.0 bits (219), Expect = 3.100e-17
Identity = 74/209 (35.41%), Postives = 110/209 (52.63%), Query Frame = 1 
Query:    1 RPDGDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLERALRMRMVDTAGGPLSGXXXXXXXXXXXXXXSRAINYHFLNRHLLWDSFTKMLLFLAPLIDWGAAR--------RQEEGESAAEGEXXXXXXXXXXXXXXXXXXSGRP---AACGACGRAPASMPYATDCGHVFCYFCLRAACARDPNYACAICGAHFAASRRWVV 594
            RP  D+R  +W  +   E++Y+AL +LN L FL  G Y T + R L MR+V                       SR I++ ++NR L+W  FT+ +LF+ PLI+    +        +   G + +   XXXXXXXXXXXXXXXXXX       + C  C   P S+PY +DCGH+FCY+C++ +C  D ++ C  C    +  +R+ +
Sbjct:  237 RPSTDFRKRLWNLMNFLESSYKALSILNFLAFLYDGKYVTLVNRVLHMRLV-----------------YAHPTLSRNISFEYMNRLLVWHGFTEFILFIMPLINIDRIKSFLYRVLIKNSFGSNTSXXXXXXXXXXXXXXXXXXXXXXXXXMVLSKCPICMNDPISIPYTSDCGHLFCYYCIKTSCMIDSSFTCPRCNTLISNIKRFSI 428
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BLAST of mRNA_P-wetherbeei_contig13841.2.2 vs. uniprot
Match: A0A059AJ29_EUCGR (Peroxin-2 n=4 Tax=Myrtoideae TaxID=1699513 RepID=A0A059AJ29_EUCGR)

HSP 1 Score: 87.4 bits (215), Expect = 6.340e-17
Identity = 60/195 (30.77%), Postives = 95/195 (48.72%), Query Frame = 1 
Query:   28 VWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLERALRMRMVDTAGGPLSGXXXXXXXXXXXXXXSRAINYHFLNRHLLWDSFTKMLLFLAPLIDWGAAR-------RQEEGESAAEGEXXXXXXXXXXXXXXXXXXSGRPAACGACGRAPASMPY-ATDCGHVFCYFCLRAACARDPNYACAICGAHFAASRRW 588
             W  ++R E  Y+A    NLL+FL TG Y T +ERAL+ R+V   G P                 +RA+++ ++NR L+W+ F++MLL L PL++    +       + ++ +SA                       G  +AC  C  +P S+P+ A  C H +CY+CLR  CA  P++ C+ CG    A +R+
Sbjct:  187 AWVLVQRVEGIYKAASFGNLLIFLYTGRYRTLIERALKARLV--YGNP---------------NMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSTVKNFLRPFSKDKDADSA-----------------------GDDSACPICQNSP-SIPFLALPCQHRYCYYCLRTRCAATPSFRCSRCGEAVVAMQRF 340
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13841.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKS8_9PHAE3.820e-4040.93RING-type domain-containing protein n=2 Tax=Ectoca... [more]
W7TYI4_9STRA5.830e-3940.20Peroxin-2 n=1 Tax=Nannochloropsis gaditana TaxID=7... [more]
A0A1D2A1X3_AUXPR5.460e-2236.32Pex2_Pex12 domain-containing protein n=2 Tax=Auxen... [more]
A0A835Z8Z6_9STRA1.390e-2140.22RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A0L0HLU8_SPIPD2.190e-2032.98Peroxin-2 n=2 Tax=Spizellomyces TaxID=4815 RepID=A... [more]
UPI00064503DB2.770e-1928.84hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
PEX2_DICDI9.120e-1938.65Peroxisome biogenesis factor 2 n=1 Tax=Dictyosteli... [more]
A0A4D9D9T6_9STRA1.210e-1844.14Pex2_Pex12 domain-containing protein n=1 Tax=Nanno... [more]
F0ZHQ8_DICPU3.100e-1735.41Peroxin-2 n=1 Tax=Dictyostelium purpureum TaxID=57... [more]
A0A059AJ29_EUCGR6.340e-1730.77Peroxin-2 n=4 Tax=Myrtoideae TaxID=1699513 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13841contigP-wetherbeei_contig13841:1025..1750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LL84
Preferred namePEX2
PFAMsPex2_Pex12,zf-C3HC4
Model size603
Max annot lvl2759|Eukaryota
KEGG koko:K06664
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000038,GO:0000122,GO:0000151,GO:0000152,GO:0000209,GO:0000280,GO:0000428,GO:0000910,GO:0001764,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005829,GO:0005911,GO:0006082,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006694,GO:0006699,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007031,GO:0007049,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007285,GO:0007286,GO:0007399,GO:0008023,GO:0008104,GO:0008150,GO:0008152,GO:0008202,GO:0008206,GO:0008270,GO:0008285,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009062,GO:0009314,GO:0009416,GO:0009506,GO:0009628,GO:0009639,GO:0009640,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016049,GO:0016053,GO:0016054,GO:0016477,GO:0016558,GO:0016567,GO:0016591,GO:0016593,GO:0016740,GO:0017038,GO:0019216,GO:0019218,GO:0019219,GO:0019222,GO:0019395,GO:0019538,GO:0019752,GO:0019787,GO:0019941,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0030054,GO:0030154,GO:0030163,GO:0030258,GO:0030880,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031647,GO:0031648,GO:0031903,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032991,GO:0033036,GO:0033206,GO:0033233,GO:0033234,GO:0033365,GO:0033768,GO:0034440,GO:0034613,GO:0036211,GO:0040007,GO:0040011,GO:0042127,GO:0042579,GO:0042592,GO:0042632,GO:0042886,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043574,GO:0043632,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044743,GO:0045184,GO:0045540,GO:0045892,GO:0045934,GO:0046394,GO:0046395,GO:0046872,GO:0046890,GO:0046907,GO:0046914,GO:0048137,GO:0048145,GO:0048147,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048519,GO:0048523,GO:0048588,GO:0048589,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0048878,GO:0050678,GO:0050680,GO:0050789,GO:0050794,GO:0050810,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051301,GO:0051321,GO:0051603,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0055029,GO:0055044,GO:0055085,GO:0055088,GO:0055092,GO:0055114,GO:0060255,GO:0061630,GO:0061640,GO:0061659,GO:0061695,GO:0062012,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072330,GO:0072594,GO:0072662,GO:0072663,GO:0080090,GO:0090181,GO:0098588,GO:0098805,GO:0106118,GO:0140013,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1902494,GO:1902679,GO:1902930,GO:1903046,GO:1903320,GO:1903321,GO:1903506,GO:1903507,GO:1990234,GO:1990351,GO:1990415,GO:1990429,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue1.69e-41
EggNOG OGsKOG2879@1|root,KOG2879@2759|Eukaryota
Descriptionprotein import into peroxisome matrix
Cds size603
COG categoryS
BRITEko00000,ko00001,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185999.0022924-CDS-P-wetherbeei_contig13841:1024..12961683185999.0022924-CDS-P-wetherbeei_contig13841:1024..1296Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13841 1025..1296 -
1683185999.0114803-CDS-P-wetherbeei_contig13841:1419..17501683185999.0114803-CDS-P-wetherbeei_contig13841:1419..1750Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13841 1420..1750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13841.2.2prot_P-wetherbeei_contig13841.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13841 1025..1750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13841.2.2

>prot_P-wetherbeei_contig13841.2.2 ID=prot_P-wetherbeei_contig13841.2.2|Name=mRNA_P-wetherbeei_contig13841.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=201bp
RPDGDWRHAVWRALRRAEAAYRALWLLNLLLFLRTGAYPTPLERALRMRM
VDTAGGPLSGGGGGGGGGNSGGGGSRAINYHFLNRHLLWDSFTKMLLFLA
PLIDWGAARRQEEGESAAEGEEGEESEADDAGGKEDSTESGRPAACGACG
RAPASMPYATDCGHVFCYFCLRAACARDPNYACAICGAHFAASRRWVVPR
*
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mRNA from alignment at P-wetherbeei_contig13841:1025..1750-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13841.2.2 ID=mRNA_P-wetherbeei_contig13841.2.2|Name=mRNA_P-wetherbeei_contig13841.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=726bp|location=Sequence derived from alignment at P-wetherbeei_contig13841:1025..1750- (Phaeothamnion wetherbeei SAG_119_79)
CGCCCCGACGGCGACTGGCGGCACGCCGTTTGGCGGGCGCTCCGGCGGGC
CGAGGCTGCCTACCGTGCGCTGTGGTTGCTTAACCTGTTGCTGTTTCTGC
GGACGGGTGCCTACCCGACGCCACTGGAGCGGGCGCTGCGTATGCGCATG
GTGGATACCGCCGGCGGTCCTTTAAGCGGCGGCGGCGGCGGCGGTGGTGG
TGGGAATTCGGGTGGCGGCGGGTCACGGGCGATCAATTACCATTTTCTGA
ACCGGCATTTGTTGTGGGATAGCTTTACCAAGATGCTGCTGTTCCTGGCT
CCGCTCATTGATTGGGGCGCGGCCCGCCGGCGTATCGCCGCCGCGGCCGC
TGGGGCCGGCCGCTGGAGACCATTGTGGCGGCGGCAACGACGAGGGCGGC
GGCGGGGCCGGCGACGCGGGCAGGGCCCCGCCGCCGCCCGACAGAACGCG
GAAGAGGAAGAAGGCGAGTCGGCAGCCGAGGGAGAAGAAGGGGAGGAGTC
TGAAGCAGACGACGCCGGCGGAAAAGAGGACAGCACAGAGAGCGGGCGGC
CGGCAGCGTGCGGGGCGTGCGGGCGGGCGCCGGCGTCCATGCCGTACGCC
ACGGACTGCGGCCACGTTTTCTGCTACTTCTGCCTGCGGGCGGCGTGCGC
GCGGGACCCCAACTATGCCTGCGCCATTTGCGGCGCACACTTTGCGGCGT
CGCGCCGTTGGGTCGTGCCACGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13841:1025..1750-

>mRNA_P-wetherbeei_contig13841.2.2 ID=mRNA_P-wetherbeei_contig13841.2.2|Name=mRNA_P-wetherbeei_contig13841.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=603bp|location=Sequence derived from alignment at P-wetherbeei_contig13841:1025..1750- (Phaeothamnion wetherbeei SAG_119_79)
CGCCCCGACGGCGACTGGCGGCACGCCGTTTGGCGGGCGCTCCGGCGGGC
CGAGGCTGCCTACCGTGCGCTGTGGTTGCTTAACCTGTTGCTGTTTCTGC
GGACGGGTGCCTACCCGACGCCACTGGAGCGGGCGCTGCGTATGCGCATG
GTGGATACCGCCGGCGGTCCTTTAAGCGGCGGCGGCGGCGGCGGTGGTGG
TGGGAATTCGGGTGGCGGCGGGTCACGGGCGATCAATTACCATTTTCTGA
ACCGGCATTTGTTGTGGGATAGCTTTACCAAGATGCTGCTGTTCCTGGCT
CCGCTCATTGATTGGGGCGCGGCCCGCCGGCAGGAAGAAGGCGAGTCGGC
AGCCGAGGGAGAAGAAGGGGAGGAGTCTGAAGCAGACGACGCCGGCGGAA
AAGAGGACAGCACAGAGAGCGGGCGGCCGGCAGCGTGCGGGGCGTGCGGG
CGGGCGCCGGCGTCCATGCCGTACGCCACGGACTGCGGCCACGTTTTCTG
CTACTTCTGCCTGCGGGCGGCGTGCGCGCGGGACCCCAACTATGCCTGCG
CCATTTGCGGCGCACACTTTGCGGCGTCGCGCCGTTGGGTCGTGCCACGG
TGA
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