mRNA_P-wetherbeei_contig13815.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13815.1.1
Unique NamemRNA_P-wetherbeei_contig13815.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13815.1.1 vs. uniprot
Match: A0A6H5KX76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX76_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.330e-11
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    1 SWASAPLLLLWIGAALASRMHQH-SFAPPFLDVDGMGNRVVSETWSPDGITRTAKNFVRLTPDRQV 195
            +++SA L LL    +  + +H+H SF PPFLDVD  G R V   W   G  +  +NFVRLTPDRQV
Sbjct:    9 AFSSAILALLVAARSTTAILHKHLSFVPPFLDVDHFGKRTVGFEWDVTGEAKVMRNFVRLTPDRQV 74
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BLAST of mRNA_P-wetherbeei_contig13815.1.1 vs. uniprot
Match: A0A7S2B8C4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B8C4_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.590e-11
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:    7 ASAPLLLLWIGAALASRMHQHSFAPPFLDVDGMGNRVVSETWSPDGITRTAKNFVRLTPDRQVRR 201
            A+    LL + +  A ++ QHSF PP+ DVD  GNR++S+ W   G+   +++FVRLTPDRQ ++
Sbjct:   26 AATAAFLLALASTSADKLEQHSFEPPYTDVDPSGNRLLSKDWKNGGVASVSQSFVRLTPDRQSKK 90
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BLAST of mRNA_P-wetherbeei_contig13815.1.1 vs. uniprot
Match: A0A835YLV0_9STRA (L-type lectin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.590e-8
Identity = 26/50 (52.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:   40 AALASRMHQHSFAPPFLDVDGMGNRVVSETWSPDGITRTAKNFVRLTPDR 189
            A +A ++   SFAPPF   D  G R+++  W  DG+T+ AKNFVRLTPDR
Sbjct:   20 AVVADKLSAVSFAPPFEQHDSTGARIIAPGWVTDGVTKVAKNFVRLTPDR 69
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13815.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KX76_9PHAE2.330e-1148.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2B8C4_9STRA7.590e-1143.08Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835YLV0_9STRA1.590e-852.00L-type lectin-like domain-containing protein n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13815contigP-wetherbeei_contig13815:279..479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FS50
PFAMsLectin_leg-like
Model size201
Max annot lvl2759|Eukaryota
KEGG koko:K10080,ko:K10082
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030134,GO:0030135,GO:0030246,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791
Exons1
Evalue2.08e-10
EggNOG OGsKOG3839@1|root,KOG3839@2759|Eukaryota
Descriptioncarbohydrate binding
Cds size201
COG categoryB
BRITEko00000,ko00001,ko04091,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185998.4540808-CDS-P-wetherbeei_contig13815:278..4791683185998.4540808-CDS-P-wetherbeei_contig13815:278..479Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13815 279..479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13815.1.1prot_P-wetherbeei_contig13815.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13815 279..479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13815.1.1

>prot_P-wetherbeei_contig13815.1.1 ID=prot_P-wetherbeei_contig13815.1.1|Name=mRNA_P-wetherbeei_contig13815.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
SWASAPLLLLWIGAALASRMHQHSFAPPFLDVDGMGNRVVSETWSPDGIT
RTAKNFVRLTPDRQVRR
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mRNA from alignment at P-wetherbeei_contig13815:279..479-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13815.1.1 ID=mRNA_P-wetherbeei_contig13815.1.1|Name=mRNA_P-wetherbeei_contig13815.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig13815:279..479- (Phaeothamnion wetherbeei SAG_119_79)
TCGTGGGCTAGCGCGCCACTGCTGCTGTTGTGGATAGGCGCGGCGCTGGC
GAGTAGGATGCATCAGCACAGCTTCGCGCCCCCGTTTCTCGACGTTGACG
GCATGGGGAACCGCGTCGTCAGCGAAACGTGGTCGCCCGACGGCATCACA
CGGACGGCGAAGAACTTCGTCCGATTAACACCAGATCGACAGGTGAGGAG
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13815:279..479-

>mRNA_P-wetherbeei_contig13815.1.1 ID=mRNA_P-wetherbeei_contig13815.1.1|Name=mRNA_P-wetherbeei_contig13815.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig13815:279..479- (Phaeothamnion wetherbeei SAG_119_79)
TCGTGGGCTAGCGCGCCACTGCTGCTGTTGTGGATAGGCGCGGCGCTGGC
GAGTAGGATGCATCAGCACAGCTTCGCGCCCCCGTTTCTCGACGTTGACG
GCATGGGGAACCGCGTCGTCAGCGAAACGTGGTCGCCCGACGGCATCACA
CGGACGGCGAAGAACTTCGTCCGATTAACACCAGATCGACAGGTGAGGAG
A
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