mRNA_P-wetherbeei_contig138.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig138.3.1
Unique NamemRNA_P-wetherbeei_contig138.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig138.3.1 vs. uniprot
Match: A0A8J2WYF8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYF8_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.740e-21
Identity = 101/319 (31.66%), Postives = 156/319 (48.90%), Query Frame = 1 
Query:  268 RSAAAALERLGFAEGDKVPRREQINVFREVERAIAAKMAELVKAGR---YEQVKTLNARLIAVKEDFRAMQLEDVRRQHEVLRSYFWDA------GTAAMEKSRQRLQEEDERMKERIADRREKLAGMHNIQCKNLGLQLTWQPQPQVKYSKKFLELQHAEASLVRLRQFNEAQLVRGLLDRLQPVEEHEARRRFDASVAARL----EALRKRQDEENKRLEQTEVDIRLHEKRLQRAELDTLRATLLHSELAMRHDHQMAALRKPELSEHPSALWQRRRGYRATGAGHRGEQLAAAARGRRSGASLATADLTQLHDFD 1185
            +S   A    G    D+  RREQI +++ +ERAI A++  L  +GR   Y++ K LNA L  VK  F  +Q  ++       R  F  A        A  EK R+R    DE  K  +   R +LA    I+ +NL   +     P  ++S + LEL+ AE SL  ++Q+++A+ VR +LD++    E  ARR++DA +AAR     E LR +  E+  R  +    I+   KR         R    + +L MR  +   + + PEL  HPSA  QRRRG+ AT +   G +L  + RG+++   +  A +   H F+
Sbjct:   69 KSVEDAFVLFGLRPDDRTSRREQIKMWKHIERAITAEIKRLTGSGRVEAYDRAKQLNANLDNVKRGFAGLQTREIEHNQAQQRQMFEQAKKGLARSIALNEKERKR----DE--KREMKALRARLAKRQAIEHENLDHAILVAVPPLQRHSCRVLELRRAETSLAAMKQYDDAKNVRRMLDKI----EGPARRKYDAMMAARFDVAHEKLRLKHKEQQARQHEHIGTIKWSSKRRAEKHASIQRQKCANLDLDMRQANAFDSCKSPELVVHPSARHQRRRGFDATASQLNGRKLLDSIRGKKTDEHVYVAPVCATHTFE 377
[Close]
BLAST of mRNA_P-wetherbeei_contig138.3.1 vs. uniprot
Match: A0A7S2V0Q4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0Q4_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.330e-15
Identity = 75/284 (26.41%), Postives = 131/284 (46.13%), Query Frame = 1 
Query:  283 ALERLGFAEGDKVPRREQINVFREVERAIAAKMAELVKAGRYEQVKTLNARLIAVKEDFRAMQLEDVRRQHE----VLRSYFWDAGTAAMEKSRQRLQEEDERMKERIA----DRREKLAGMHNIQCKNLGLQLTWQPQPQVKYSKKFLELQHAEASLVRLRQFNEAQLVRGLLDRLQPVEEHEARRRFDASVAARLEALRKRQDEENKRLEQTEVDIRLHEKRLQRAELDTLRATLLHSELAMRHDHQMAALRKPELSEHPSALWQRRRGYRATGAGHRGEQL 1110
            A +R      D++ RREQ+ +++ ++  +  ++  L   G YE+ ++L +RL+ ++++F  +  +D  RQH+    +LRS        A +K R+ L+   ++ K  +     D+ E++A +H +Q   L ++L   P P++K+S++ LELQ++E +L R +Q+ EA+ VR ++D LQP                                                                M H H M  L+KPE+S HPSAL Q+R  ++ T A  RG  L
Sbjct:    4 AFQRFDLNHDDRIDRREQVLMYKTIQLEMEEELKNLTANGMYEEARSLESRLMNLRQEFEDLHHQDFSRQHDDQTRMLRS--------AKQKFRENLKATHQKEKRDVEIFCRDKEEEMAHLHKVQLAQLEMELASTPMPKIKFSRRLLELQNSERNLSRQKQYEEAKAVRRMIDHLQPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMNHAHAMERLKKPEMSVHPSALLQQRASHQDTAAALRGSHL 279
[Close]
BLAST of mRNA_P-wetherbeei_contig138.3.1 vs. uniprot
Match: A0A482SU43_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SU43_9ARCH)

HSP 1 Score: 80.1 bits (196), Expect = 3.680e-13
Identity = 65/228 (28.51%), Postives = 115/228 (50.44%), Query Frame = 1 
Query:  247 AARLHQSRSAAAALERLGFAEGDKVPRREQINVFREVERAIAAKMAELVKAGRYEQVKTLNARLIAVKEDFRAMQLED-VRRQHEVLRSYFWDAGTAAMEKSRQRLQEEDERMKERIADRREKLAGMHNIQCKNLGLQLTWQPQPQVKYSKKFLELQHAEASLVRLRQFNEAQLVRGLLDRLQPVEEHEARRRFDASVAARLEALRKRQDEENKRLEQTEVDIRLHEK 927
            A  L   +  A  L R GF+  DK+ RRE + V+  +  A+  ++  L  +  Y + K + ARL A++ +F  +Q+++ +       RS F  A    ++ +  +  +E ++  + +    +K    H I    L  Q+   P P ++YSK+ +EL  +E +L +L Q++EA  VR ++++L P EE +   RF  S+    E  RK+  E++K     E D+R  EK
Sbjct:   27 ATELTTVQDLADCLSRFGFSPDDKLTRRELVTVYSRIRHAMEPEIFRLANSACYAEAKEMRARLTAIRNEFDRLQIKNNIENVQNEQRSLFQRASQEVLKNTTNKHSQEFQQQTDSLNHLTQKHLLFHEIDSTKLEQQIGKIPVPNMRYSKRLIELFKSEYNLNKLNQYDEAMKVRRMINKLLPQEEKQYYDRFHESI----EMKRKKLAEDHK-----EDDLRFEEK 245
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig138.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A8J2WYF8_9STRA2.740e-2131.66Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2V0Q4_9STRA1.330e-1526.41Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482SU43_9ARCH3.680e-1328.51Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig138contigP-wetherbeei_contig138:8862..11224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008607421.1
Model size1504
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.91e-10
EggNOG OGs2AG2T@1|root,2RYYX@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_004560.1
Cds size894
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig138.3.1prot_P-wetherbeei_contig138.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig138 9094..10846 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185997.6835775-UTR-P-wetherbeei_contig138:8861..90931683185997.6835775-UTR-P-wetherbeei_contig138:8861..9093Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig138 8862..9093 -
1683185997.7554865-UTR-P-wetherbeei_contig138:10846..112241683185997.7554865-UTR-P-wetherbeei_contig138:10846..11224Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig138 10847..11224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185997.6947331-CDS-P-wetherbeei_contig138:9093..94121683185997.6947331-CDS-P-wetherbeei_contig138:9093..9412Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig138 9094..9412 -
1683185997.708283-CDS-P-wetherbeei_contig138:9638..97431683185997.708283-CDS-P-wetherbeei_contig138:9638..9743Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig138 9639..9743 -
1683185997.724613-CDS-P-wetherbeei_contig138:9928..100481683185997.724613-CDS-P-wetherbeei_contig138:9928..10048Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig138 9929..10048 -
1683185997.7356246-CDS-P-wetherbeei_contig138:10344..105411683185997.7356246-CDS-P-wetherbeei_contig138:10344..10541Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig138 10345..10541 -
1683185997.7464561-CDS-P-wetherbeei_contig138:10693..108461683185997.7464561-CDS-P-wetherbeei_contig138:10693..10846Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig138 10694..10846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig138.3.1

>prot_P-wetherbeei_contig138.3.1 ID=prot_P-wetherbeei_contig138.3.1|Name=mRNA_P-wetherbeei_contig138.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=298bp
MAELVKAGRYEQVKTLNARLIAVKEDFRAMQLEDVRRQHEVLRSYFWDAG
TAAMEKSRQRLQEEDERMKERIADRREKLAGMHNIQCKNLGLQLTWQPQP
QVKYSKKFLELQHAEASLVRLRQFNEAQLVRGLLDRLQPVEEHEARRRFD
ASVAARLEALRKRQDEENKRLEQTEVDIRLHEKRLQRAELDTLRATLLHS
ELAMRHDHQMAALRKPELSEHPSALWQRRRGYRATGAGHRGEQLAAAARG
RRSGASLATADLTQLHDFDAVVAAAPGRTAALSGTVTMHDSVVVAEA*
back to top

mRNA from alignment at P-wetherbeei_contig138:8862..11224-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig138.3.1 ID=mRNA_P-wetherbeei_contig138.3.1|Name=mRNA_P-wetherbeei_contig138.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2363bp|location=Sequence derived from alignment at P-wetherbeei_contig138:8862..11224- (Phaeothamnion wetherbeei SAG_119_79)
CCACCAGGCTTGGTGGACACAACACAAGATGAGCGAGCAGGTTTGCGTAG
AGGTGTTGATCACGCTGTACAGATCGGAAGGAACGCTTAGAAAAGCTCCT
ATTGCTCTCTTTGTCTCTCCCTCGTGTCTCCGGTGTCCCCGTCTCGCCGA
ACCCTCTATTCTCTCCCTCTCATTCTCGCCCAATCGCAGTCGCTGGTCCG
TTTGGAGCATGAATTCGATGCCGGCCATTTTCAGGAGCGGCCTCCCGCTG
CTCGACTTCACCAGTCGCGAAGTGCTGCGGCCGCCCTCGAGAGGTTGGGA
TTTGCGGAGGGTGACAAAGTCCCCCGGCGGGAGCAAATAAACGTCTTCAG
AGAAGTGGAGCGGGCAATTGCCGCCAAGATGGCAGAGCTGGTGAAGGCCG
GCCGCTACGAGCAAGTGAAGACCTTGAACGCGCGTTTGATCGCTGTGAAG
GAGGATTTTCGCGCCATGCAGCTCGAGGATGTGCGACGGCAGCACGAAGT
ACTGCGCTCATACTTTTGGGACGCCGGCACAGTGAGTATTTATTAGTCCC
TGTAAACCCACTGCAGACAGAGAAGTCGTCTTTTTTATAATGCTGATCCA
TGCTGTTCTCGCTCGTCGTCGTGTTCCCTCATGACTCCGCACTCGTCGTC
GGCCGCCGGCCGCCTAATTTGGAACGTCATCAGGCGGCGATGGAGAAGAG
CCGGCAGCGCCTGCAGGAGGAGGACGAGCGGATGAAGGAGCGGATCGCCG
ACCGGCGCGAGAAGCTGGCTGGGATGCATAACATCCAGTGTAAAAACCTC
GGCTTGCAGCTCACCTGGCAACCCCAACCGCAGGTCAAGTACAGCAAGAA
GTTTCTCGAGCTCCAGCACGCCGAAGCCAGGCAAGTGCTGCGGGTCTTGA
TTGCTCTTCCTAGTTTTGTTGTAGACTCGGCTGAAACGATACCAATGGTC
TCTTCCTTCTTGCCCTGTCTTTAAAGTGAACGTCGCTGTTAAAGCAGAAG
CAGCTCTGCAACTCCTTCCTTCTCCTACGTGTCAATCGGAGTAGCCTCCA
GTGTTGTGTTAGACGCCAAGGGATCAGTCTGCGATTGCACAACCTGCATT
GGCCCCGAAAGGCCACCTAGGTTAACCATGCATCCGTCGCCCTTTCCCAT
TGCCATGGCCTGCCCCGACACGGCAGCCTGGTGCGGCTGCGGCAGTTCAA
CGAGGCGCAGCTGGTGCGGGGGCTCCTCGACCGGCTCCAACCAGTGGAGG
AGCATGAGGCACGCCGCCGCTTCGACGCCTCCGTCGCCGCCCGACTGTGA
GCAGCTGCGAGGCGGAAGCACCTTGATGGAGGCTGGCGTGCCACGTGGTT
GTCAGGACATTCAACATCCCCCCTTGCTTGCTGCCAGGTCTATGGGCGGT
GGCACCATTGTTCAGCGGACAGAATATATGCTGTTTGCTTGGAGATACCG
ACCGTCCAAATCTTCGTTCTTCTCTACGCAGGGAAGCGCTGCGGAAGCGG
CAGGACGAGGAGAACAAGCGGCTGGAGCAGACGGAAGTTGACATTCGGCT
GCACGAGAAGCGCCTCCAACGCGCGGAGCTCGACACGTGAGCTCAGAAGT
CGCCCCAGATTCTACCGAAGAGTTTCTACCTTTTCCGCTTTGTAATGAGT
CACATTTCCAGAATGCTTCATCATCCAGAACCGTCATACTTCTCGGCAAG
GGCCTTTCTCGGGAACTCGTCGATGTCGCTGTCCACAACCTGACCACCTC
GTTCTTGGACGCACGATGGCCCCAATTCGTCCTTTCTTGATTTTGCCATG
GCGGGGGAGCAGCCTGCGGGCGACGCTTCTGCACAGTGAGCTAGCCATGC
GACATGACCACCAGATGGCGGCGCTGCGTAAGCCCGAGCTGAGCGAGCAC
CCGTCCGCGCTGTGGCAGCGCCGCCGTGGCTACCGCGCCACGGGTGCCGG
CCACCGCGGCGAGCAGCTGGCGGCGGCAGCGCGCGGCCGGCGGAGCGGCG
CGTCTCTGGCAACGGCTGATCTGACGCAGCTCCACGATTTCGACGCGGTG
GTGGCGGCGGCGCCCGGGAGAACGGCGGCACTCAGCGGAACGGTGACCAT
GCACGACAGCGTGGTGGTGGCGGAAGCCTGAGAGGAGGGAAGACCGCAAC
TCTCTGCGGTCCGTCCACAGAAGAAAACGGTGTTTCCCGTGTACCTCCGC
AATGTCGCTCGCTGTAGAAACGTTTATTTTAGAAGCTGCTTCCTGTCTCG
CACAGTGTTGAGGAGTGAGGAGGCTGCGATTTGATTGTATAAATGTCTTT
TCTCGGGAGTCGGAGGAGAGGTGATTGGTATTGCTGGAATGTCCATACTA
ACAGACTCCGTCT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig138:8862..11224-

>mRNA_P-wetherbeei_contig138.3.1 ID=mRNA_P-wetherbeei_contig138.3.1|Name=mRNA_P-wetherbeei_contig138.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=894bp|location=Sequence derived from alignment at P-wetherbeei_contig138:8862..11224- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGAGCTGGTGAAGGCCGGCCGCTACGAGCAAGTGAAGACCTTGAA
CGCGCGTTTGATCGCTGTGAAGGAGGATTTTCGCGCCATGCAGCTCGAGG
ATGTGCGACGGCAGCACGAAGTACTGCGCTCATACTTTTGGGACGCCGGC
ACAGCGGCGATGGAGAAGAGCCGGCAGCGCCTGCAGGAGGAGGACGAGCG
GATGAAGGAGCGGATCGCCGACCGGCGCGAGAAGCTGGCTGGGATGCATA
ACATCCAGTGTAAAAACCTCGGCTTGCAGCTCACCTGGCAACCCCAACCG
CAGGTCAAGTACAGCAAGAAGTTTCTCGAGCTCCAGCACGCCGAAGCCAG
CCTGGTGCGGCTGCGGCAGTTCAACGAGGCGCAGCTGGTGCGGGGGCTCC
TCGACCGGCTCCAACCAGTGGAGGAGCATGAGGCACGCCGCCGCTTCGAC
GCCTCCGTCGCCGCCCGACTGGAAGCGCTGCGGAAGCGGCAGGACGAGGA
GAACAAGCGGCTGGAGCAGACGGAAGTTGACATTCGGCTGCACGAGAAGC
GCCTCCAACGCGCGGAGCTCGACACCCTGCGGGCGACGCTTCTGCACAGT
GAGCTAGCCATGCGACATGACCACCAGATGGCGGCGCTGCGTAAGCCCGA
GCTGAGCGAGCACCCGTCCGCGCTGTGGCAGCGCCGCCGTGGCTACCGCG
CCACGGGTGCCGGCCACCGCGGCGAGCAGCTGGCGGCGGCAGCGCGCGGC
CGGCGGAGCGGCGCGTCTCTGGCAACGGCTGATCTGACGCAGCTCCACGA
TTTCGACGCGGTGGTGGCGGCGGCGCCCGGGAGAACGGCGGCACTCAGCG
GAACGGTGACCATGCACGACAGCGTGGTGGTGGCGGAAGCCTGA
back to top