mRNA_P-wetherbeei_contig13757.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13757.1.1
Unique NamemRNA_P-wetherbeei_contig13757.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13757.1.1 vs. uniprot
Match: A0A352KEL8_9PROT (Class II aldolase n=5 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KEL8_9PROT)

HSP 1 Score: 196 bits (498), Expect = 3.460e-61
Identity = 100/136 (73.53%), Postives = 112/136 (82.35%), Query Frame = 1
Query:    1 FHVAIYTARTDVNAIVHTHSLHATALACAHREIPAFHYMVAVAGGDSIRCAPYATFGTDELAHHALAALEGRHACLLANHGQIALGETPSRALAMAHEVETLAGQYAATLLVGEPYILDTDEMARVLEKFKTYGQQ 408
            FH+AIY AR++V AIVH HS HATALACA REIPAFHYMVAVAGGD IRCAPYATFGT+ L  +A+AAL  R ACLLANHGQIALG TP++ALAMA EVETLA QY   L +G P +LD DEMARV+ KF+ YGQQ
Sbjct:   80 FHLAIYAARSEVGAIVHCHSRHATALACARREIPAFHYMVAVAGGDCIRCAPYATFGTEALGAYAVAALRARQACLLANHGQIALGPTPAKALAMAAEVETLATQYCTALAIGGPVLLDADEMARVIAKFRDYGQQ 215          
BLAST of mRNA_P-wetherbeei_contig13757.1.1 vs. uniprot
Match: A0A836TPM7_9PROT (Class II aldolase n=1 Tax=Sneathiellales bacterium TaxID=2528251 RepID=A0A836TPM7_9PROT)

HSP 1 Score: 182 bits (462), Expect = 1.320e-55
Identity = 96/136 (70.59%), Postives = 108/136 (79.41%), Query Frame = 1
Query:    1 FHVAIYTARTDVNAIVHTHSLHATALACAHREIPAFHYMVAVAGGDSIRCAPYATFGTDELAHHALAALEGRHACLLANHGQIALGETPSRALAMAHEVETLAGQYAATLLVGEPYILDTDEMARVLEKFKTYGQQ 408
            FH+ IY AR DV AIVHTHSL ATAL+C HR+IP FHYMVAVAGG  IRCAPYATFGT+ L+ +A+AAL+GR ACLLANHGQIA G   + AL +A +VE LA QY   L VGEP +L  DEMARVLEKFKTYGQQ
Sbjct:   82 FHLDIYRAREDVAAIVHTHSLLATALSCLHRDIPDFHYMVAVAGGADIRCAPYATFGTEVLSENAVAALDGRTACLLANHGQIATGNDLNAALGLAQQVEALAAQYLNCLQVGEPQLLGADEMARVLEKFKTYGQQ 217          
BLAST of mRNA_P-wetherbeei_contig13757.1.1 vs. uniprot
Match: A0A6A7KT54_9PROT (Class II aldolase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6A7KT54_9PROT)

HSP 1 Score: 178 bits (452), Expect = 3.400e-54
Identity = 93/136 (68.38%), Postives = 108/136 (79.41%), Query Frame = 1
Query:    1 FHVAIYTARTDVNAIVHTHSLHATALACAHREIPAFHYMVAVAGGDSIRCAPYATFGTDELAHHALAALEGRHACLLANHGQIALGETPSRALAMAHEVETLAGQYAATLLVGEPYILDTDEMARVLEKFKTYGQQ 408
            FH AI  AR +V A+VHTH++ AT LAC HR IPAFHYMVA+AGGDSIRCAPYATFG+ ELA HA+ AL+GR ACLLANHG IA+GET ++ALA+A EVETLA QY   L +GEP IL   EM  VLEKF TYG++
Sbjct:   82 FHRAILAARPEVGAVVHTHAMFATTLACLHRAIPAFHYMVAMAGGDSIRCAPYATFGSQELADHAVRALDGRKACLLANHGMIAVGETLAQALALAVEVETLAAQYWRALQIGEPVILPGKEMRVVLEKFTTYGRR 217          
BLAST of mRNA_P-wetherbeei_contig13757.1.1 vs. uniprot
Match: UPI001FCE170A (class II aldolase/adducin family protein n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI001FCE170A)

HSP 1 Score: 174 bits (441), Expect = 9.440e-53
Identity = 87/138 (63.04%), Postives = 107/138 (77.54%), Query Frame = 1
Query:    1 FHVAIYTARTDVNAIVHTHSLHATALACAHREIPAFHYMVAVAGGDSIRCAPYATFGTDELAHHALAALEGRHACLLANHGQIALGETPSRALAMAHEVETLAGQYAATLLVGEPYILDTDEMARVLEKFKTYGQQVK 414
            FH+A Y AR D+NA+VHTHSL+AT LACAH+ IPAFHYMVAVAGG  I   PY TFGT+ELA H    L  R+ACL+ANHGQIA+G+  ++AL +AHEVE LA QY   L +GE +IL  +EMARVLE+FK+YGQ+ +
Sbjct:   62 FHLAAYRARADMNAVVHTHSLYATVLACAHKPIPAFHYMVAVAGGSDIPMVPYDTFGTEELAQHVAEGLAHRNACLMANHGQIAIGKDLAQALELAHEVEVLAQQYVNVLSIGEAHILPEEEMARVLERFKSYGQRAQ 199          
BLAST of mRNA_P-wetherbeei_contig13757.1.1 vs. uniprot
Match: UPI00036E1C8C (L-fuculose-phosphate aldolase n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI00036E1C8C)

HSP 1 Score: 174 bits (440), Expect = 3.620e-52
Identity = 89/139 (64.03%), Postives = 103/139 (74.10%), Query Frame = 1
Query:    1 FHVAIYTARTDVNAIVHTHSLHATALACAHREIPAFHYMVAVAGGDSIRCAPYATFGTDELAHHALAALEGRHACLLANHGQIALGETPSRALAMAHEVETLAGQYAATLLVGEPYILDTDEMARVLEKFKTYGQQVKS 417
            FH++ Y AR D+NA+VHTHSLHA  LACA R IPAFHYMV VAGGD I   PYATFGT ELA H    L+ R ACL+A+HG IALGET  +AL +AHEVE LA QY   LL+G P +L   EMARV+EKFK+YGQ  +S
Sbjct:   96 FHLSAYAARPDMNAVVHTHSLHAVVLACAGRAIPAFHYMVTVAGGDDIPVVPYATFGTPELAEHVARGLQDRKACLMAHHGAIALGETLPKALELAHEVEVLAEQYYKLLLLGPPELLSDSEMARVIEKFKSYGQNAQS 234          
BLAST of mRNA_P-wetherbeei_contig13757.1.1 vs. uniprot
Match: UPI001CCC2228 (class II aldolase/adducin family protein n=1 Tax=Cystobacter gracilis TaxID=394092 RepID=UPI001CCC2228)

HSP 1 Score: 172 bits (437), Expect = 5.500e-52
Identity = 91/136 (66.91%), Postives = 103/136 (75.74%), Query Frame = 1
Query:    1 FHVAIYTARTDVNAIVHTHSLHATALACAHREIPAFHYMVAVAGGDSIRCAPYATFGTDELAHHALAALEGRHACLLANHGQIALGETPSRALAMAHEVETLAGQYAATLLVGEPYILDTDEMARVLEKFKTYGQQ 408
            FH  I  AR +V A++HTHSLH+TALAC  R IP FHYMVAVAGG  IRCAPYATFGT+EL+ HA+AALEGR ACLLANHG I +G   + A  +A EVETLA  Y   L VGEP +LD  EMA VLEKF+TYGQQ
Sbjct:   76 FHRDILVARPEVQAVLHTHSLHSTALACLRRGIPPFHYMVAVAGGTDIRCAPYATFGTEELSRHAVAALEGRKACLLANHGLITVGADLAGAFKLAVEVETLAAMYLRALQVGEPVLLDDAEMAVVLEKFRTYGQQ 211          
BLAST of mRNA_P-wetherbeei_contig13757.1.1 vs. uniprot
Match: A0A7Y5CY67_HYPSQ (L-fuculose-phosphate aldolase n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A7Y5CY67_HYPSQ)

HSP 1 Score: 172 bits (436), Expect = 8.540e-52
Identity = 89/136 (65.44%), Postives = 102/136 (75.00%), Query Frame = 1
Query:    1 FHVAIYTARTDVNAIVHTHSLHATALACAHREIPAFHYMVAVAGGDSIRCAPYATFGTDELAHHALAALEGRHACLLANHGQIALGETPSRALAMAHEVETLAGQYAATLLVGEPYILDTDEMARVLEKFKTYGQQ 408
            FH+A Y AR D NA+VHTHS+HAT LACAH  IPAFHYMVAVAGG  I C PYATFGT ELA H    L+ R ACL+ANHGQIALGE  ++AL +A EVETLAGQY   LL+G  +IL   EM  ++EKFK YGQ+
Sbjct:   78 FHLAAYAARPDRNALVHTHSMHATVLACAHEPIPAFHYMVAVAGGSDIPCVPYATFGTAELAAHVANGLKDRDACLMANHGQIALGENLAQALELAFEVETLAGQYFKVLLLGAAHILPDAEMELMIEKFKAYGQR 213          
BLAST of mRNA_P-wetherbeei_contig13757.1.1 vs. uniprot
Match: A0A6I0EDN6_HYPSQ (Class II aldolase n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EDN6_HYPSQ)

HSP 1 Score: 172 bits (436), Expect = 1.020e-51
Identity = 88/138 (63.77%), Postives = 108/138 (78.26%), Query Frame = 1
Query:    1 FHVAIYTARTDVNAIVHTHSLHATALACAHREIPAFHYMVAVAGGDSIRCAPYATFGTDELAHHALAALEGRHACLLANHGQIALGETPSRALAMAHEVETLAGQYAATLLVGEPYILDTDEMARVLEKFKTYGQQVK 414
            FH+A Y AR D++A+VHTHSL+AT LACAH+ IPAFHYMVAVAGG++I  APY TFGT+ LA H    L  R+ACL+ANHGQIA+G + + AL +AHEVE LA QYA  L +GE  IL  +EMARVLE+FKTYGQ+ +
Sbjct:   84 FHLAAYRARPDMHAVVHTHSLYATVLACAHKPIPAFHYMVAVAGGNNIPLAPYDTFGTEALAEHVANGLAQRNACLMANHGQIAIGTSLASALELAHEVEVLAEQYAKVLTLGEANILPDEEMARVLERFKTYGQRAQ 221          
BLAST of mRNA_P-wetherbeei_contig13757.1.1 vs. uniprot
Match: A0A369T7Q1_9PROT (Class II aldolase n=1 Tax=Ferruginivarius sediminum TaxID=2661937 RepID=A0A369T7Q1_9PROT)

HSP 1 Score: 172 bits (436), Expect = 1.150e-51
Identity = 87/134 (64.93%), Postives = 103/134 (76.87%), Query Frame = 1
Query:    4 HVAIYTARTDVNAIVHTHSLHATALACAHREIPAFHYMVAVAGGDSIRCAPYATFGTDELAHHALAALEGRHACLLANHGQIALGETPSRALAMAHEVETLAGQYAATLLVGEPYILDTDEMARVLEKFKTYGQ 405
            H  +   R DV A+VHTH++  T L+C HR+IP FHYM+AVAGG  IRCAPYATFGT EL+ +AL ALEGR ACLLANHG +ALG+   +ALA+A EVETLA QY   L +GEP +LD  EMARVLEKFKTYG+
Sbjct:   80 HRDVLAGRDDVGAVVHTHAMFCTTLSCLHRDIPPFHYMIAVAGGSDIRCAPYATFGTRELSDNALKALEGRKACLLANHGMLALGDNLQKALALAVEVETLAAQYWRALQIGEPVLLDEAEMARVLEKFKTYGK 213          
BLAST of mRNA_P-wetherbeei_contig13757.1.1 vs. uniprot
Match: A0A1B1YVK3_9GAMM (Fuculose phosphate aldolase n=1 Tax=Immundisolibacter cernigliae TaxID=1810504 RepID=A0A1B1YVK3_9GAMM)

HSP 1 Score: 172 bits (435), Expect = 1.170e-51
Identity = 87/136 (63.97%), Postives = 105/136 (77.21%), Query Frame = 1
Query:    1 FHVAIYTARTDVNAIVHTHSLHATALACAHREIPAFHYMVAVAGGDSIRCAPYATFGTDELAHHALAALEGRHACLLANHGQIALGETPSRALAMAHEVETLAGQYAATLLVGEPYILDTDEMARVLEKFKTYGQQ 408
            FH  IY  R +V AIVHTHS +A+ALAC  RE+PAFHYMVA AGGDS+RCA YATFGT EL+ +AL ALE RHACLLANHG IA G   + ALA+A E+E+L+GQY A L  G P +LD  EMARV+ +F++YG+Q
Sbjct:   77 FHCDIYAVRPEVGAIVHTHSRYASALACQRRELPAFHYMVAAAGGDSVRCADYATFGTPELSANALVALEDRHACLLANHGVIATGANLTSALALAEEIESLSGQYCAALATGTPVLLDAAEMARVVARFESYGKQ 212          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13757.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A352KEL8_9PROT3.460e-6173.53Class II aldolase n=5 Tax=Alphaproteobacteria bact... [more]
A0A836TPM7_9PROT1.320e-5570.59Class II aldolase n=1 Tax=Sneathiellales bacterium... [more]
A0A6A7KT54_9PROT3.400e-5468.38Class II aldolase n=1 Tax=Alphaproteobacteria bact... [more]
UPI001FCE170A9.440e-5363.04class II aldolase/adducin family protein n=1 Tax=H... [more]
UPI00036E1C8C3.620e-5264.03L-fuculose-phosphate aldolase n=1 Tax=Hyphomicrobi... [more]
UPI001CCC22285.500e-5266.91class II aldolase/adducin family protein n=1 Tax=C... [more]
A0A7Y5CY67_HYPSQ8.540e-5265.44L-fuculose-phosphate aldolase n=2 Tax=Hyphomicrobi... [more]
A0A6I0EDN6_HYPSQ1.020e-5163.77Class II aldolase n=1 Tax=Hyphomicrobium sp. TaxID... [more]
A0A369T7Q1_9PROT1.150e-5164.93Class II aldolase n=1 Tax=Ferruginivarius sediminu... [more]
A0A1B1YVK3_9GAMM1.170e-5163.97Fuculose phosphate aldolase n=1 Tax=Immundisolibac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13757contigP-wetherbeei_contig13757:4..423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1267005.KB911256_gene1438
Preferred namefucA
PFAMsAldolase_II
Model size420
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00603,RC00604
KEGG koko:K01628
KEGG ReactionR02262
KEGG Pathwayko00051,ko01120,map00051,map01120
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.94e-53
EggNOG OGsCOG0235@1|root,COG0235@2|Bacteria,1MW7B@1224|Proteobacteria,2U1NG@28211|Alphaproteobacteria,3N9AE@45401|Hyphomicrobiaceae
EC4.1.2.17
DescriptionClass II Aldolase and Adducin N-terminal domain
Cds size420
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185996.4188998-CDS-P-wetherbeei_contig13757:3..4231683185996.4188998-CDS-P-wetherbeei_contig13757:3..423Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13757 4..423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13757.1.1prot_P-wetherbeei_contig13757.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13757 4..423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13757.1.1

>prot_P-wetherbeei_contig13757.1.1 ID=prot_P-wetherbeei_contig13757.1.1|Name=mRNA_P-wetherbeei_contig13757.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
FHVAIYTARTDVNAIVHTHSLHATALACAHREIPAFHYMVAVAGGDSIRC
APYATFGTDELAHHALAALEGRHACLLANHGQIALGETPSRALAMAHEVE
TLAGQYAATLLVGEPYILDTDEMARVLEKFKTYGQQVKS*
back to top

mRNA from alignment at P-wetherbeei_contig13757:4..423+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13757.1.1 ID=mRNA_P-wetherbeei_contig13757.1.1|Name=mRNA_P-wetherbeei_contig13757.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig13757:4..423+ (Phaeothamnion wetherbeei SAG_119_79)
TTCCATGTGGCGATTTATACGGCGCGCACGGATGTAAACGCCATCGTGCA TACCCATTCGCTGCACGCCACCGCGCTGGCCTGTGCGCACCGGGAAATTC CGGCATTTCATTACATGGTTGCGGTGGCGGGCGGTGACAGCATCCGCTGT GCGCCCTATGCGACTTTTGGCACGGACGAACTGGCGCATCACGCACTGGC GGCACTGGAGGGGCGCCACGCCTGTTTGCTGGCCAATCACGGGCAGATTG CGTTGGGGGAAACGCCTTCCAGGGCGCTGGCGATGGCGCATGAGGTTGAA ACCCTGGCCGGCCAATATGCCGCCACGCTGCTGGTTGGTGAGCCATATAT TCTTGATACGGATGAAATGGCGCGCGTCCTGGAAAAATTCAAAACCTATG GTCAACAGGTAAAAAGTTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13757:4..423+

>mRNA_P-wetherbeei_contig13757.1.1 ID=mRNA_P-wetherbeei_contig13757.1.1|Name=mRNA_P-wetherbeei_contig13757.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig13757:4..423+ (Phaeothamnion wetherbeei SAG_119_79)
TTCCATGTGGCGATTTATACGGCGCGCACGGATGTAAACGCCATCGTGCA
TACCCATTCGCTGCACGCCACCGCGCTGGCCTGTGCGCACCGGGAAATTC
CGGCATTTCATTACATGGTTGCGGTGGCGGGCGGTGACAGCATCCGCTGT
GCGCCCTATGCGACTTTTGGCACGGACGAACTGGCGCATCACGCACTGGC
GGCACTGGAGGGGCGCCACGCCTGTTTGCTGGCCAATCACGGGCAGATTG
CGTTGGGGGAAACGCCTTCCAGGGCGCTGGCGATGGCGCATGAGGTTGAA
ACCCTGGCCGGCCAATATGCCGCCACGCTGCTGGTTGGTGAGCCATATAT
TCTTGATACGGATGAAATGGCGCGCGTCCTGGAAAAATTCAAAACCTATG
GTCAACAGGTAAAAAGTTAA
back to top