mRNA_P-wetherbeei_contig13647.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13647.1.1
Unique NamemRNA_P-wetherbeei_contig13647.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig13647.1.1 vs. uniprot
Match: A0A7C4XMS3_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XMS3_9HYPH)

HSP 1 Score: 190 bits (482), Expect = 1.510e-55
Identity = 98/184 (53.26%), Postives = 127/184 (69.02%), Query Frame = 1 
Query:    1 LITTRWKPTLGAARAAKEATLWRERMALEVCLGPGLADTWIPEGSVAGLEFVALRTASDFIAEASRMDNCLDRYADKLTGRTVRVFAIRREGRSIANIEISPHEREPGHPVIAQLRGPHNRRAALEVWRAAYQWLGSQPIRLADRRIAIRVGPAVRKRRQDEIWRAFIAVLPERAAATFETTIL 552
            L+   W+P+L A RAA+E   WR R+AL++CLG GLADTW+ EGS  G +FVALRTA DFIAEA  MDNCLD+YA +L   TVRVF++RR+ R +A++EI+ HE E G P+I QL+   NRRA LEVW+AAY WLG Q IR A   +A+ +G   R+RR  E+WR ++  L       FE  +L
Sbjct:  193 LLRKAWEPSLSARRAAEEVGAWRHRIALDLCLGTGLADTWLAEGSALGYDFVALRTAHDFIAEAEAMDNCLDQYAHRLECGTVRVFSVRRQSRIVADLEIAAHEHEFGIPMITQLKSARNRRAPLEVWQAAYAWLGGQSIRPAAADLAL-LGGGDRERRMIELWRPYLDTLSLAHRRRFENVVL 375
[Close]
BLAST of mRNA_P-wetherbeei_contig13647.1.1 vs. uniprot
Match: A0A2W4RZ73_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4RZ73_9PROT)

HSP 1 Score: 144 bits (363), Expect = 5.510e-38
Identity = 79/184 (42.93%), Postives = 102/184 (55.43%), Query Frame = 1 
Query:    1 LITTRWKPTLGAARAAKEATLWRERMALEVCLGPGLADTWIPEGSVAGLEFVALRTASDFIAEASRMDNCLDRYADKLTGRTVRVFAIRREGRSIANIEISPHEREPGHPVIAQLRGPHNRRAALEVWRAAYQWLGSQPIRLADRRIAIRVGPAVRKRRQDEIWRAFIAVLPERAAATFETTIL 552
            L+   W P +   RA  E T WR+R+ L + L       W+ EGS  G EFV LRT  DFI E+  MDNCLD +++KL      VF+IRR G  +A+IEI  H  +P  P I QLRGP NRRA  E+WRAAY WLGSQ +     ++   V  A R+R    +W+ ++A L       FE   L
Sbjct:  196 LLRRPWTPNMSPRRAFDEVTAWRKRIRLALTLSSLSRKPWLSEGSALGYEFVELRTIEDFINESDAMDNCLDSFSEKLESGVSYVFSIRRNGLPVADIEIGVHPVDPTLPTIVQLRGPRNRRAHPEIWRAAYSWLGSQELHPVPPQV---VNSAARRRAWRALWKPYLATLSPADREQFEKIAL 376
[Close]
BLAST of mRNA_P-wetherbeei_contig13647.1.1 vs. uniprot
Match: A0A0D6JL93_9HYPH (Uncharacterized protein n=1 Tax=Candidatus Filomicrobium marinum TaxID=1608628 RepID=A0A0D6JL93_9HYPH)

HSP 1 Score: 141 bits (356), Expect = 4.050e-37
Identity = 66/141 (46.81%), Postives = 92/141 (65.25%), Query Frame = 1 
Query:    1 LITTRWKPTLGAARAAKEATLWRERMALEVCLGPGLADTWIPEGSVAGLEFVALRTASDFIAEASRMDNCLDRYADKLTGRTVRVFAIRREGRSIANIEISPHEREPGHPVIAQLRGPHNRRAALEVWRAAYQWLGSQPIR 423
            L+   W   +G  +A  E  +WR R+AL V L       W+ EGS  G EFVAL+T  DFI E+ +M+NCLD+++D + G   R+F+IR++GR++AN+E++PH+ EP    I QLRG  N +A  EVWRAAY WL  QP+R
Sbjct:  192 LVRKPWSSEMGLRKALDEVGIWRRRVALAVALNSQKETDWLTEGSANGYEFVALQTPEDFIRESDKMENCLDQFSDHMEGGLSRIFSIRKKGRTVANLEVAPHDSEPTIAGIRQLRGRRNHKARPEVWRAAYTWLSEQPLR 332
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13647.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7C4XMS3_9HYPH1.510e-5553.26Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A2W4RZ73_9PROT5.510e-3842.93Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A0D6JL93_9HYPH4.050e-3746.81Uncharacterized protein n=1 Tax=Candidatus Filomic... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13647contigP-wetherbeei_contig13647:26..595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1267005.KB911256_gene2046
PFAMsPcfJ
Model size570
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.67e-27
EggNOG OGs28X2W@1|root,2ZJ1E@2|Bacteria,1R92Z@1224|Proteobacteria,2TS5H@28211|Alphaproteobacteria
Cds size570
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185993.9069183-CDS-P-wetherbeei_contig13647:25..5951683185993.9069183-CDS-P-wetherbeei_contig13647:25..595Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13647 26..595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13647.1.1prot_P-wetherbeei_contig13647.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13647 26..595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13647.1.1

>prot_P-wetherbeei_contig13647.1.1 ID=prot_P-wetherbeei_contig13647.1.1|Name=mRNA_P-wetherbeei_contig13647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=190bp
LITTRWKPTLGAARAAKEATLWRERMALEVCLGPGLADTWIPEGSVAGLE
FVALRTASDFIAEASRMDNCLDRYADKLTGRTVRVFAIRREGRSIANIEI
SPHEREPGHPVIAQLRGPHNRRAALEVWRAAYQWLGSQPIRLADRRIAIR
VGPAVRKRRQDEIWRAFIAVLPERAAATFETTILARRKKR
back to top

mRNA from alignment at P-wetherbeei_contig13647:26..595+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13647.1.1 ID=mRNA_P-wetherbeei_contig13647.1.1|Name=mRNA_P-wetherbeei_contig13647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig13647:26..595+ (Phaeothamnion wetherbeei SAG_119_79)
CTCATCACCACGCGCTGGAAGCCGACGCTGGGGGCGGCGCGCGCCGCCAA
GGAAGCAACGCTGTGGCGTGAGCGGATGGCGCTGGAAGTCTGCCTGGGGC
CAGGGCTTGCCGATACCTGGATCCCAGAAGGCTCGGTTGCGGGCCTCGAA
TTCGTGGCGCTGCGCACGGCGTCCGATTTCATCGCGGAAGCGAGCCGCAT
GGACAACTGTCTCGACCGCTATGCCGACAAGCTCACCGGCCGCACCGTGC
GCGTCTTCGCGATCCGCCGCGAGGGCCGCAGCATCGCCAACATCGAGATC
TCCCCGCACGAGCGCGAACCGGGCCATCCCGTGATCGCGCAATTGCGGGG
GCCGCACAACCGCCGGGCAGCGCTCGAAGTCTGGCGGGCTGCGTACCAGT
GGCTTGGAAGCCAGCCGATCCGTCTGGCGGACCGGCGGATTGCAATCCGG
GTGGGCCCGGCCGTGCGCAAGCGCCGGCAGGACGAGATCTGGCGGGCGTT
CATTGCCGTCTTGCCGGAGCGTGCAGCCGCGACGTTCGAGACGACGATTC
TCGCGCGCCGGAAGAAGCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13647:26..595+

>mRNA_P-wetherbeei_contig13647.1.1 ID=mRNA_P-wetherbeei_contig13647.1.1|Name=mRNA_P-wetherbeei_contig13647.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig13647:26..595+ (Phaeothamnion wetherbeei SAG_119_79)
CTCATCACCACGCGCTGGAAGCCGACGCTGGGGGCGGCGCGCGCCGCCAA
GGAAGCAACGCTGTGGCGTGAGCGGATGGCGCTGGAAGTCTGCCTGGGGC
CAGGGCTTGCCGATACCTGGATCCCAGAAGGCTCGGTTGCGGGCCTCGAA
TTCGTGGCGCTGCGCACGGCGTCCGATTTCATCGCGGAAGCGAGCCGCAT
GGACAACTGTCTCGACCGCTATGCCGACAAGCTCACCGGCCGCACCGTGC
GCGTCTTCGCGATCCGCCGCGAGGGCCGCAGCATCGCCAACATCGAGATC
TCCCCGCACGAGCGCGAACCGGGCCATCCCGTGATCGCGCAATTGCGGGG
GCCGCACAACCGCCGGGCAGCGCTCGAAGTCTGGCGGGCTGCGTACCAGT
GGCTTGGAAGCCAGCCGATCCGTCTGGCGGACCGGCGGATTGCAATCCGG
GTGGGCCCGGCCGTGCGCAAGCGCCGGCAGGACGAGATCTGGCGGGCGTT
CATTGCCGTCTTGCCGGAGCGTGCAGCCGCGACGTTCGAGACGACGATTC
TCGCGCGCCGGAAGAAGCGG
back to top