mRNA_P-wetherbeei_contig13583.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13583.1.1
Unique NamemRNA_P-wetherbeei_contig13583.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13583.1.1 vs. uniprot
Match: A0A3L6UNM9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UNM9_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.580e-10
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 1 
Query: 1054 YYDGGDGGRIRIYGGTAQGGAAADXXXXVEIAGGFSRRGQGGSFVARSGYGAAASSGVMELSTANAGDAGVSGDVSVYTGTSS 1302
            Y  GG GG + IYGG AQG    D    V + GG+SR G+GG F  ++GYG A SSG +++STANAG  GVSG++ +++GT+S
Sbjct:  672 YGGGGTGGWVNIYGGAAQGANKNDKGGFVHVEGGYSRSGRGGGFWLQTGYGEATSSGDIQMSTANAGTKGVSGNIQLFSGTTS 754
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BLAST of mRNA_P-wetherbeei_contig13583.1.1 vs. uniprot
Match: A0A397ATM2_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ATM2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 4.910e-10
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 1 
Query: 1054 YYDGGDGGRIRIYGGTAQGGAAADXXXXVEIAGGFSRRGQGGSFVARSGYGAAASSGVMELSTANAGDAGVSGDVSVYTGTSS 1302
            Y  GG GG + IYGG AQG    D    V + GG+SR G+GG F  ++GYG A SSG +++STANAG  GVSG++ +++GT+S
Sbjct: 1301 YGGGGTGGWVNIYGGAAQGANKNDKGGFVHVEGGYSRSGRGGGFWLQTGYGEATSSGDIQMSTANAGTKGVSGNIQLFSGTTS 1383
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BLAST of mRNA_P-wetherbeei_contig13583.1.1 vs. uniprot
Match: A0A835YTP7_9STRA (PSI domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTP7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.120e-6
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:  268 TAAAASKGGSVTISGGAGASPHINDGGDGGDVRLRGGAGRGGGRLDAGGAVEITGGRAYAGP 453
            T+AAA +GG V I+GG GASPH  DGGDGG V+L+GGA RG    D GG V + GG AYAGP
Sbjct:  965 TSAAAGRGGGVLIAGGEGASPHPVDGGDGGYVKLQGGAARGLNVQDEGGMVSLAGGSAYAGP 1026
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BLAST of mRNA_P-wetherbeei_contig13583.1.1 vs. uniprot
Match: D7FS23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS23_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.310e-5
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:  982 GDSEAVEAAGGDVYIAAGEGSSEDYYDGGDGGRIRIYGGTAQGGAAADXXXXVEIAGGFSRRGQG 1176
            G++ A+EAA           SS D Y+GGDGGR++I+GG  QGGA  DXXXX+E++GGFSRRG+G
Sbjct: 1240 GETSALEAAXXXXXXXXXXXSSRDRYNGGDGGRVQIFGGAGQGGALGDXXXXIELSGGFSRRGKG 1304
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13583.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A3L6UNM9_9STRA4.580e-1050.60Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A397ATM2_9STRA4.910e-1050.60Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A835YTP7_9STRA1.120e-662.90PSI domain-containing protein (Fragment) n=1 Tax=T... [more]
D7FS23_ECTSI1.310e-555.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13583contigP-wetherbeei_contig13583:2..1819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008880236.1
Model size1743
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.71e-09
EggNOG OGs2CMRT@1|root,2QRKV@2759|Eukaryota
Cds size1743
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185991.2432907-CDS-P-wetherbeei_contig13583:1..14791683185991.2432907-CDS-P-wetherbeei_contig13583:1..1479Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13583 2..1479 +
1683185991.2533484-CDS-P-wetherbeei_contig13583:1554..18191683185991.2533484-CDS-P-wetherbeei_contig13583:1554..1819Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13583 1555..1819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13583.1.1prot_P-wetherbeei_contig13583.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13583 2..1819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13583.1.1

>prot_P-wetherbeei_contig13583.1.1 ID=prot_P-wetherbeei_contig13583.1.1|Name=mRNA_P-wetherbeei_contig13583.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=581bp
AGTGGGVSLQSGLSAEGSSGAIALVTSASGSDGVSGDVAVRTGASMAGTS
GAISLSTGPAAGGVGGAISLLVGDSDYDDGGDIELAAGLTAAAASKGGSV
TISGGAGASPHINDGGDGGDVRLRGGAGRGGGRLDAGGAVEITGGRAYAG
PGGEVTIASGSGALAGSGAVFVGTADAGIAGVSGAVAVRTGTSSQGASGA
VTLDTGDARHGVGGAISVRVGSGDSGEGGYLSLTAGKTTDASPGGYVAIT
SGYSSRASSGAIALQTPDGGAAGASGAVMLTTGTSSAGASGSVQVATGAS
ESGGGGDIVLKVGSGRRGDGGSLVVTAGDSEAVEAAGGDVYIAAGEGSSE
DYYDGGDGGRIRIYGGTAQGGAAADDGGGVEIAGGFSRRGQGGSFVARSG
YGAAASSGVMELSTANAGDAGVSGDVSVYTGTSSQGDSGSVVVQTGSARR
GRGGSFHVFVGSGDSGAGGDVALVAGDTSADPGGNVALRTGFSIVTGNSP
GSGSGGISLTTGVAGRGPGGSIELLVGQGGALDGGNVVLRAGEAQARARR
GGDVVLAAGRGASQARGPGGGGGNGGRVFIE
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mRNA from alignment at P-wetherbeei_contig13583:2..1819+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13583.1.1 ID=mRNA_P-wetherbeei_contig13583.1.1|Name=mRNA_P-wetherbeei_contig13583.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1818bp|location=Sequence derived from alignment at P-wetherbeei_contig13583:2..1819+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGGGACGGGCGGCGGGGTGAGCTTGCAGTCCGGCCTGAGCGCCGAGGG
CTCCAGCGGGGCAATCGCACTGGTCACCTCGGCATCGGGATCCGACGGCG
TCAGCGGCGACGTCGCCGTCCGTACGGGGGCGTCTATGGCCGGCACGTCG
GGCGCTATCTCGCTCAGCACCGGCCCCGCCGCGGGCGGCGTAGGCGGCGC
GATCTCCCTGCTGGTGGGCGACAGCGACTACGACGACGGTGGCGATATTG
AGCTGGCGGCGGGCCTGACGGCGGCGGCGGCCAGCAAAGGTGGCTCCGTC
ACCATCAGCGGCGGCGCGGGTGCCAGTCCCCACATCAACGACGGCGGCGA
CGGCGGCGATGTCCGACTCCGCGGTGGTGCCGGCCGGGGCGGCGGCCGGC
TGGACGCCGGCGGCGCCGTCGAGATTACGGGCGGCCGGGCCTACGCCGGC
CCCGGCGGCGAAGTTACAATAGCTTCCGGGTCGGGCGCCTTGGCCGGTAG
CGGCGCGGTTTTTGTCGGCACGGCGGACGCAGGCATTGCCGGTGTCAGCG
GCGCCGTGGCGGTGCGCACAGGAACGTCCAGCCAAGGCGCCAGTGGGGCC
GTTACGCTCGACACCGGGGACGCGCGCCACGGCGTCGGCGGTGCCATCAG
CGTCAGAGTGGGCTCTGGCGACTCCGGAGAGGGTGGCTACCTCTCGCTCA
CTGCCGGCAAGACCACAGACGCCAGCCCCGGCGGTTATGTGGCCATCACG
AGCGGTTATAGCAGCCGCGCTTCAAGCGGGGCAATCGCGCTGCAGACGCC
GGACGGTGGTGCGGCCGGCGCCAGCGGCGCCGTCATGCTGACAACGGGCA
CGTCTTCCGCGGGTGCCAGCGGCTCGGTTCAGGTTGCGACGGGCGCATCG
GAAAGTGGCGGCGGCGGCGACATCGTGCTGAAGGTGGGGAGTGGCCGCCG
CGGCGATGGCGGATCTCTGGTGGTGACCGCCGGCGACTCAGAGGCGGTCG
AGGCTGCCGGTGGCGATGTCTACATCGCCGCGGGGGAGGGCAGCAGCGAA
GATTACTATGACGGCGGCGATGGCGGCCGCATACGGATCTACGGCGGCAC
CGCGCAAGGCGGCGCGGCGGCCGACGACGGCGGTGGCGTCGAGATCGCCG
GCGGATTCTCGCGTCGGGGCCAAGGTGGCAGCTTCGTGGCGCGCAGCGGC
TACGGCGCGGCGGCGTCGAGCGGAGTCATGGAACTTTCCACCGCCAACGC
CGGCGATGCCGGCGTGAGCGGCGATGTGTCAGTCTACACCGGCACATCCA
GCCAGGGCGACTCGGGGTCGGTGGTCGTCCAGACGGGGTCCGCCCGCCGG
GGCCGCGGCGGCTCCTTTCACGTCTTCGTCGGTTCTGGTGACTCGGGTGC
CGGCGGGGACGTTGCCCTCGTAGCCGGCGACACGTCGGCGGACCCGGGCG
GCAATGTCGCCCTCCGCACGGGCTTCTCGTACGCCGGTGCCAGCGGCAAG
ATGGCGCTGACAACCGCCAACGGCGGCGCGTTCGGAATGAGCGGCGACGT
CAGCATCGTGACGGGCAACAGCCCGGGCAGCGGGTCGGGCGGGATTTCTC
TCACCACAGGCGTCGCCGGCCGCGGCCCCGGCGGCAGCATCGAGCTACTG
GTGGGGCAGGGCGGCGCGCTGGACGGCGGGAACGTCGTGCTGCGCGCCGG
CGAGGCGCAGGCGCGGGCGCGGCGCGGCGGCGACGTCGTGCTGGCGGCCG
GCCGCGGCGCCAGCCAGGCAAGGGGCCCTGGCGGCGGCGGCGGCAACGGC
GGGCGCGTGTTCATAGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13583:2..1819+

>mRNA_P-wetherbeei_contig13583.1.1 ID=mRNA_P-wetherbeei_contig13583.1.1|Name=mRNA_P-wetherbeei_contig13583.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1743bp|location=Sequence derived from alignment at P-wetherbeei_contig13583:2..1819+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGGGACGGGCGGCGGGGTGAGCTTGCAGTCCGGCCTGAGCGCCGAGGG
CTCCAGCGGGGCAATCGCACTGGTCACCTCGGCATCGGGATCCGACGGCG
TCAGCGGCGACGTCGCCGTCCGTACGGGGGCGTCTATGGCCGGCACGTCG
GGCGCTATCTCGCTCAGCACCGGCCCCGCCGCGGGCGGCGTAGGCGGCGC
GATCTCCCTGCTGGTGGGCGACAGCGACTACGACGACGGTGGCGATATTG
AGCTGGCGGCGGGCCTGACGGCGGCGGCGGCCAGCAAAGGTGGCTCCGTC
ACCATCAGCGGCGGCGCGGGTGCCAGTCCCCACATCAACGACGGCGGCGA
CGGCGGCGATGTCCGACTCCGCGGTGGTGCCGGCCGGGGCGGCGGCCGGC
TGGACGCCGGCGGCGCCGTCGAGATTACGGGCGGCCGGGCCTACGCCGGC
CCCGGCGGCGAAGTTACAATAGCTTCCGGGTCGGGCGCCTTGGCCGGTAG
CGGCGCGGTTTTTGTCGGCACGGCGGACGCAGGCATTGCCGGTGTCAGCG
GCGCCGTGGCGGTGCGCACAGGAACGTCCAGCCAAGGCGCCAGTGGGGCC
GTTACGCTCGACACCGGGGACGCGCGCCACGGCGTCGGCGGTGCCATCAG
CGTCAGAGTGGGCTCTGGCGACTCCGGAGAGGGTGGCTACCTCTCGCTCA
CTGCCGGCAAGACCACAGACGCCAGCCCCGGCGGTTATGTGGCCATCACG
AGCGGTTATAGCAGCCGCGCTTCAAGCGGGGCAATCGCGCTGCAGACGCC
GGACGGTGGTGCGGCCGGCGCCAGCGGCGCCGTCATGCTGACAACGGGCA
CGTCTTCCGCGGGTGCCAGCGGCTCGGTTCAGGTTGCGACGGGCGCATCG
GAAAGTGGCGGCGGCGGCGACATCGTGCTGAAGGTGGGGAGTGGCCGCCG
CGGCGATGGCGGATCTCTGGTGGTGACCGCCGGCGACTCAGAGGCGGTCG
AGGCTGCCGGTGGCGATGTCTACATCGCCGCGGGGGAGGGCAGCAGCGAA
GATTACTATGACGGCGGCGATGGCGGCCGCATACGGATCTACGGCGGCAC
CGCGCAAGGCGGCGCGGCGGCCGACGACGGCGGTGGCGTCGAGATCGCCG
GCGGATTCTCGCGTCGGGGCCAAGGTGGCAGCTTCGTGGCGCGCAGCGGC
TACGGCGCGGCGGCGTCGAGCGGAGTCATGGAACTTTCCACCGCCAACGC
CGGCGATGCCGGCGTGAGCGGCGATGTGTCAGTCTACACCGGCACATCCA
GCCAGGGCGACTCGGGGTCGGTGGTCGTCCAGACGGGGTCCGCCCGCCGG
GGCCGCGGCGGCTCCTTTCACGTCTTCGTCGGTTCTGGTGACTCGGGTGC
CGGCGGGGACGTTGCCCTCGTAGCCGGCGACACGTCGGCGGACCCGGGCG
GCAATGTCGCCCTCCGCACGGGCTTCTCCATCGTGACGGGCAACAGCCCG
GGCAGCGGGTCGGGCGGGATTTCTCTCACCACAGGCGTCGCCGGCCGCGG
CCCCGGCGGCAGCATCGAGCTACTGGTGGGGCAGGGCGGCGCGCTGGACG
GCGGGAACGTCGTGCTGCGCGCCGGCGAGGCGCAGGCGCGGGCGCGGCGC
GGCGGCGACGTCGTGCTGGCGGCCGGCCGCGGCGCCAGCCAGGCAAGGGG
CCCTGGCGGCGGCGGCGGCAACGGCGGGCGCGTGTTCATAGAA
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