mRNA_P-wetherbeei_contig13548.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13548.1.1
Unique NamemRNA_P-wetherbeei_contig13548.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig13548.1.1 vs. uniprot
Match: A0A422PGI5_9TRYP (Putative ubiquitin activating E1 enzyme n=1 Tax=Trypanosoma conorhini TaxID=83891 RepID=A0A422PGI5_9TRYP)

HSP 1 Score: 82.4 bits (202), Expect = 4.260e-17
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 ERLDALVAAHDVIFLLTDSRE--WLPTLLAAAHDKMLINAALGLDTFLVMRHG 153
            ERLDAL+ AHDV+FLLTDSRE  WLPT++A AH+K LINAALG DT++VMRHG
Sbjct:  525 ERLDALIQAHDVVFLLTDSREARWLPTVMATAHNKPLINAALGFDTYVVMRHG 577
[Close]
BLAST of mRNA_P-wetherbeei_contig13548.1.1 vs. uniprot
Match: W7U295_9STRA (Autophagy-related 7 isoform cra_a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U295_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.480e-16
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 ERLDALVAAHDVIFLLTDSRE--WLPTLLAAAHDKMLINAALGLDTFLVMRHG 153
            E LD LVA HDVIFLLTD+RE  WLPT+L A HDK+L+NAALG DTF+VMRHG
Sbjct:  375 ELLDKLVAEHDVIFLLTDTRESRWLPTVLGAVHDKILVNAALGFDTFMVMRHG 427
[Close]
BLAST of mRNA_P-wetherbeei_contig13548.1.1 vs. uniprot
Match: K8Z8S3_NANGC (Autophagy-related protein 7 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8S3_NANGC)

HSP 1 Score: 80.9 bits (198), Expect = 1.480e-16
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 ERLDALVAAHDVIFLLTDSRE--WLPTLLAAAHDKMLINAALGLDTFLVMRHG 153
            E LD LVA HDVIFLLTD+RE  WLPT+L A HDK+L+NAALG DTF+VMRHG
Sbjct:  383 ELLDKLVAEHDVIFLLTDTRESRWLPTVLGAVHDKILVNAALGFDTFMVMRHG 435
[Close]
BLAST of mRNA_P-wetherbeei_contig13548.1.1 vs. uniprot
Match: A0A4D9DI03_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DI03_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.020e-16
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 ERLDALVAAHDVIFLLTDSRE--WLPTLLAAAHDKMLINAALGLDTFLVMRHG 153
            E LD LVA HDVIFLLTD+RE  WLPT+L A HDK+L+NAALG DTF+VMRHG
Sbjct:  500 ELLDKLVAEHDVIFLLTDTRESRWLPTVLGAMHDKILVNAALGFDTFMVMRHG 552
[Close]
BLAST of mRNA_P-wetherbeei_contig13548.1.1 vs. uniprot
Match: A0A7S1MMF7_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1MMF7_NEODS)

HSP 1 Score: 79.0 bits (193), Expect = 3.500e-16
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 ERLDALVAAHDVIFLLTDSRE--WLPTLLAAAHDKMLINAALGLDTFLVMRHG 153
            E LD L+ +HDV+FLLTDSRE  WLPTL+ AAHDK +IN+ALG DT+LVMRHG
Sbjct:   94 ESLDRLIQSHDVVFLLTDSRESRWLPTLICAAHDKPVINSALGFDTYLVMRHG 146
[Close]
BLAST of mRNA_P-wetherbeei_contig13548.1.1 vs. uniprot
Match: A0A448WMI0_9PLAT (Hypothetical protein n=1 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A448WMI0_9PLAT)

HSP 1 Score: 76.3 bits (186), Expect = 5.520e-16
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 ERLDALVAAHDVIFLLTDSRE--WLPTLLAAAHDKMLINAALGLDTFLVMRHG 153
            +RLD L+  HDVIFLLTD+RE  WLPTLLA  H K++INAALG DT+LVMRHG
Sbjct:   59 QRLDFLIRGHDVIFLLTDTRESRWLPTLLANIHAKLVINAALGFDTYLVMRHG 111
[Close]
BLAST of mRNA_P-wetherbeei_contig13548.1.1 vs. uniprot
Match: A0A7S4DW24_9EUKA (Ubiquitin-like modifier-activating enzyme ATG7 n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DW24_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 7.040e-16
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 ERLDALVAAHDVIFLLTDSRE--WLPTLLAAAHDKMLINAALGLDTFLVMRHG 153
            E+L AL+ +HDVIFLLTDSRE  WLP++LA+AH K+L+NAALG DTF+VMRHG
Sbjct:  475 EKLKALIVSHDVIFLLTDSRESRWLPSVLASAHRKLLVNAALGFDTFVVMRHG 527
[Close]
BLAST of mRNA_P-wetherbeei_contig13548.1.1 vs. uniprot
Match: A0A061J9R8_TRYRA (Ubiquitin activating E1 enzyme n=2 Tax=Trypanosoma rangeli TaxID=5698 RepID=A0A061J9R8_TRYRA)

HSP 1 Score: 78.6 bits (192), Expect = 9.620e-16
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 ERLDALVAAHDVIFLLTDSRE--WLPTLLAAAHDKMLINAALGLDTFLVMRHG 153
            ERLDAL+ AHDV+FLLTDSRE  WLPT++  AH+K L+N ALG DT++VMRHG
Sbjct:  524 ERLDALIQAHDVVFLLTDSREARWLPTVMTMAHNKPLVNTALGFDTYVVMRHG 576
[Close]
BLAST of mRNA_P-wetherbeei_contig13548.1.1 vs. uniprot
Match: Q4DZR3_TRYCC (Ubiquitin activating E1 enzyme, putative n=8 Tax=Trypanosoma cruzi TaxID=5693 RepID=Q4DZR3_TRYCC)

HSP 1 Score: 78.6 bits (192), Expect = 9.620e-16
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 ERLDALVAAHDVIFLLTDSRE--WLPTLLAAAHDKMLINAALGLDTFLVMRHG 153
            ERLD L+  HDV+FLLTDSRE  WLPTL+A  H+K LINAALG DT++VMRHG
Sbjct:  525 ERLDTLIQEHDVVFLLTDSRESRWLPTLMATTHNKPLINAALGFDTYVVMRHG 577
[Close]
BLAST of mRNA_P-wetherbeei_contig13548.1.1 vs. uniprot
Match: D7FNV8_ECTSI (Autophagy-related protein 7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNV8_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 9.620e-16
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 ERLDALVAAHDVIFLLTDSRE--WLPTLLAAAHDKMLINAALGLDTFLVMRHG 153
            E L+ LV++HDV+F+LTDSRE  WLPTLLAA HDK+ +NAALGLD+FLV+RHG
Sbjct:  519 ETLEELVSSHDVVFVLTDSRESRWLPTLLAAKHDKICVNAALGLDSFLVVRHG 571
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13548.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A422PGI5_9TRYP4.260e-1775.47Putative ubiquitin activating E1 enzyme n=1 Tax=Tr... [more]
W7U295_9STRA1.480e-1675.47Autophagy-related 7 isoform cra_a n=1 Tax=Nannochl... [more]
K8Z8S3_NANGC1.480e-1675.47Autophagy-related protein 7 n=1 Tax=Nannochloropsi... [more]
A0A4D9DI03_9STRA2.020e-1675.47Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1MMF7_NEODS3.500e-1671.70Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A448WMI0_9PLAT5.520e-1671.70Hypothetical protein n=1 Tax=Protopolystoma xenopo... [more]
A0A7S4DW24_9EUKA7.040e-1671.70Ubiquitin-like modifier-activating enzyme ATG7 n=1... [more]
A0A061J9R8_TRYRA9.620e-1669.81Ubiquitin activating E1 enzyme n=2 Tax=Trypanosoma... [more]
Q4DZR3_TRYCC9.620e-1671.70Ubiquitin activating E1 enzyme, putative n=8 Tax=T... [more]
D7FNV8_ECTSI9.620e-1671.70Autophagy-related protein 7 n=2 Tax=Ectocarpus Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13548contigP-wetherbeei_contig13548:38..528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNV8
Preferred nameATG7
PFAMsATG7_N,ThiF
Model size153
Max annot lvl2759|Eukaryota
KEGG rclassRC00074
KEGG koko:K01493,ko:K08337
KEGG ReactionR01663
KEGG Pathwayko00240,ko01100,ko04136,ko04138,ko04140,ko04216,map00240,map01100,map04136,map04138,map04140,map04216
KEGG ModuleM00429
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000045,GO:0000407,GO:0000422,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006497,GO:0006501,GO:0006807,GO:0006914,GO:0006950,GO:0006952,GO:0006995,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008641,GO:0009056,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009607,GO:0009620,GO:0009987,GO:0009991,GO:0010150,GO:0016020,GO:0016043,GO:0016236,GO:0016237,GO:0016740,GO:0016874,GO:0016877,GO:0018410,GO:0019538,GO:0019778,GO:0019779,GO:0022411,GO:0022607,GO:0031667,GO:0031668,GO:0031669,GO:0032258,GO:0032446,GO:0032501,GO:0032502,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034645,GO:0034727,GO:0036211,GO:0042157,GO:0042158,GO:0042594,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043562,GO:0043687,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044804,GO:0044805,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050832,GO:0050896,GO:0051179,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0061726,GO:0061919,GO:0070647,GO:0070727,GO:0070925,GO:0071496,GO:0071704,GO:0071840,GO:0072665,GO:0090693,GO:0098542,GO:0099402,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1905037
Exons2
Evalue1.58e-16
EggNOG OGsCOG0476@1|root,KOG2337@2759|Eukaryota
EC3.5.4.12
DescriptionAtg12 activating enzyme activity
Cds size153
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko02044,ko03029,ko04121,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185990.192846-CDS-P-wetherbeei_contig13548:37..991683185990.192846-CDS-P-wetherbeei_contig13548:37..99Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13548 38..99 +
1683185990.2039647-CDS-P-wetherbeei_contig13548:437..5281683185990.2039647-CDS-P-wetherbeei_contig13548:437..528Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13548 438..528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13548.1.1prot_P-wetherbeei_contig13548.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13548 38..528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13548.1.1

>prot_P-wetherbeei_contig13548.1.1 ID=prot_P-wetherbeei_contig13548.1.1|Name=mRNA_P-wetherbeei_contig13548.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=51bp
ERLDALVAAHDVIFLLTDSREWLPTLLAAAHDKMLINAALGLDTFLVMRH
G
back to top

mRNA from alignment at P-wetherbeei_contig13548:38..528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13548.1.1 ID=mRNA_P-wetherbeei_contig13548.1.1|Name=mRNA_P-wetherbeei_contig13548.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=491bp|location=Sequence derived from alignment at P-wetherbeei_contig13548:38..528+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGGCTGGATGCGCTCGTAGCGGCGCACGACGTGATTTTCCTGCTCAC
CGACTCGCGCGAGTCCAGGCGAGTTTGTGAAGCTGGGGAACTTTTCGGTG
TGGTGCGTCAGTGGTTTGTCAGTTTTGTTTTGCTGTCGGCGCTTCCTTTT
GCCAAAAGAAAAAGAAATTGAGTTCCCGCTTCGTTTTTCGCAGGTTTCAC
TGGCTTCATAATAACGGGGCAGTCTTTGTTGCCTCGGTTTTGTTGAGGAC
GGCAGATTACGAGCAAACGGAGCAAAAATTCCGTCACGCGTGCTGCGACG
GAATCATGGGGACGGCTGCCGTCAGGGGAAGCTTTGTCTCAGATCACATC
TTTCATTTTCTTTTCAATGCCTGTGGGGCTCTGTGTGCTCTGTGCGGCAG
GTGGCTCCCGACACTGCTGGCGGCGGCCCACGACAAGATGCTCATCAACG
CCGCTCTGGGCCTCGACACCTTCCTCGTCATGCGGCATGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13548:38..528+

>mRNA_P-wetherbeei_contig13548.1.1 ID=mRNA_P-wetherbeei_contig13548.1.1|Name=mRNA_P-wetherbeei_contig13548.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig13548:38..528+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCGGCTGGATGCGCTCGTAGCGGCGCACGACGTGATTTTCCTGCTCAC
CGACTCGCGCGAGTGGCTCCCGACACTGCTGGCGGCGGCCCACGACAAGA
TGCTCATCAACGCCGCTCTGGGCCTCGACACCTTCCTCGTCATGCGGCAT
GGC
back to top