mRNA_P-wetherbeei_contig13546.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13546.1.1
Unique NamemRNA_P-wetherbeei_contig13546.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13546.1.1 vs. uniprot
Match: D7FZB4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB4_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 8.500e-24
Identity = 73/176 (41.48%), Postives = 98/176 (55.68%), Query Frame = 2 
Query:   56 MMLCARAVRSGRGLL-----RKRPGDCTASGHV--------GALPQCTEPRRGFAIKKQPTPQRERKDSAKTASRDQTQMFVKFLDSEGTPMPELSEDEKAKNFEIGRRYQRETSTRNNAWEADMAMKIALRDEAIAALPVHLQEAALQPDDVGPPPNRRIATITPPIPGFSPENY 544
            M+  A +  SGR +      R  PG C A   +        G +  C   RRG  +  +P   + +K+ +  A   +T   +K LD+   PMPELS +EK +NF+IGRRY  + +T +N   AD+  KI LRD+AIA LP  LQ AA QPD   PP NRR+AT TPPIPGF  ++Y
Sbjct:    1 MLRPAVSTLSGRSVAAAVSRRSFPGVCAAGDRLERSRTAGSGGVVGC---RRGMMMAAKPG--KIKKERSGKALDKKTMTLLKLLDARPEPMPELSAEEKQRNFDIGRRYNSKMATSHNERMADLTTKIKLRDDAIAHLPELLQHAARQPDRNPPPLNRRVATYTPPIPGFDKKDY 171
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BLAST of mRNA_P-wetherbeei_contig13546.1.1 vs. uniprot
Match: A0A8J2WJL0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WJL0_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.760e-13
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 2 
Query:  248 TQMFVKFLDSEGTPMPELSEDEKAKNFEIGRRYQRETSTRNNAWEADMAMKIALRDEAIAALPVHLQEAALQPDDVGPPP-NRRIATITPPIPGFSPENYPE 550
            T  +   LD+     P+ SE+E  +NFEIG RY + +  ++  +EA + +K+ L+  A+A+LP  L++ A+  DDV  PP +RR   +TPPIPGF PE YP+
Sbjct:   54 TAFYRAILDAPRKTRPKFSEEEAKRNFEIGARYNKLSRIKHCEFEAGLQLKLDLQQYALASLPPDLRKQAMSLDDVPLPPLDRRFWALTPPIPGFKPEAYPD 155
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BLAST of mRNA_P-wetherbeei_contig13546.1.1 vs. uniprot
Match: A0A835YRI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRI8_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.070e-10
Identity = 41/84 (48.81%), Postives = 51/84 (60.71%), Query Frame = 2 
Query:  293 PELSEDEKAKNFEIGRRYQRETSTRNNAWEADMAMKIALRDEAIAALPVHLQEAALQPDDVGPPPNRRIATITPPIPGFSPENY 544
            P  + +E+A +FEIGR Y R    R+NA + DMA K+ALRD+A+AALP  L+  A   DD   P  RRIA  T PIP F    Y
Sbjct:   81 PNYTPEERAYHFEIGRAYTRNLMLRHNAQQEDMAWKLALRDQALAALPPGLRAHASSIDDAPFPLERRIALWTAPIPNFDAAYY 164
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BLAST of mRNA_P-wetherbeei_contig13546.1.1 vs. uniprot
Match: A0A7S3P841_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P841_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.720e-8
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 2 
Query:  293 PELSEDEKAKNFEIGRRYQRETSTRNNAWEADMAMKIALRDEAIAALPVH--LQEAALQPDDVGPPPNRRIATITPPIPGFS 532
            PE+S++EKA+ +E+GR Y   +   +N    D++ KI L+  A+  LP +  L+E A++ DD GPPP R IA  T PIPG++
Sbjct:   90 PEISQEEKARRYEVGRNYVIGSFKEHNEIHHDLSCKIHLKKHAVKMLPRNSKLKEEAMKVDDEGPPPWRHIAKWTAPIPGYN 171
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BLAST of mRNA_P-wetherbeei_contig13546.1.1 vs. uniprot
Match: A0A8J5I2G0_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5I2G0_ZINOF)

HSP 1 Score: 55.8 bits (133), Expect = 2.340e-5
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 2 
Query:  266 FLDSEGTPMPELSEDEKAKNFEIGRRYQRETSTRNNAWEADMAMKIALRDEAIAALPVHLQEAALQPDDVGPPPNRRIATITPPIPGF 529
             +D E  P  EL+ ++  +   + + Y R    ++ A +A     + L+ EAIAALP HLQ+AAL PD    P NR +AT+TPPI G+
Sbjct:  151 LVDKEAIPKYELTVEDGRR---LAKEYSRHLMRKHRARQAAETAFLKLKKEAIAALPDHLQKAALVPDLTPFPANRFMATLTPPIEGY 235
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13546.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FZB4_ECTSI8.500e-2441.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J2WJL0_9STRA2.760e-1341.18Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835YRI8_9STRA2.070e-1048.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3P841_9STRA3.720e-842.68Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A8J5I2G0_ZINOF2.340e-539.77Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13546contigP-wetherbeei_contig13546:78..1395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZB4
Model size986
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons2
Evalue7.38e-26
EggNOG OGs2D19J@1|root,2S4VG@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L28/L40, mitochondrial
Ec32 orthologEc-07_001600.1
Cds size516
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185990.110338-UTR-P-wetherbeei_contig13546:77..4921683185990.110338-UTR-P-wetherbeei_contig13546:77..492Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13546 78..492 -
1683185990.1332178-UTR-P-wetherbeei_contig13546:1340..13951683185990.1332178-UTR-P-wetherbeei_contig13546:1340..1395Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13546 1341..1395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185990.1187766-CDS-P-wetherbeei_contig13546:492..7721683185990.1187766-CDS-P-wetherbeei_contig13546:492..772Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13546 493..772 -
1683185990.1260297-CDS-P-wetherbeei_contig13546:1104..13401683185990.1260297-CDS-P-wetherbeei_contig13546:1104..1340Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13546 1105..1340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13546.1.1prot_P-wetherbeei_contig13546.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13546 493..1340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13546.1.1

>prot_P-wetherbeei_contig13546.1.1 ID=prot_P-wetherbeei_contig13546.1.1|Name=mRNA_P-wetherbeei_contig13546.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
MMLCARAVRSGRGLLRKRPGDCTASGHVGALPQCTEPRRGFAIKKQPTPQ
RERKDSAKTASRDQTQMFVKFLDSEGTPMPELSEDEKAKNFEIGRRYQRE
TSTRNNAWEADMAMKIALRDEAIAALPVHLQEAALQPDDVGPPPNRRIAT
ITPPIPGFSPENYPELCVGDR*
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mRNA from alignment at P-wetherbeei_contig13546:78..1395-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13546.1.1 ID=mRNA_P-wetherbeei_contig13546.1.1|Name=mRNA_P-wetherbeei_contig13546.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1318bp|location=Sequence derived from alignment at P-wetherbeei_contig13546:78..1395- (Phaeothamnion wetherbeei SAG_119_79)
TTTGTGAAGAACAAGAAACAAGGATAACCAAGCCCTTGTGGTAGACTGAA
CATCAATGATGCTTTGTGCTCGTGCGGTGCGAAGCGGCCGCGGCCTGCTG
CGGAAGCGGCCCGGCGATTGCACGGCATCCGGACACGTTGGTGCTCTCCC
GCAATGCACTGAGCCACGACGCGGTTTTGCCATCAAAAAGCAACCGACTC
CGCAGCGTGAACGAAAGGACAGCGCCAAAACTGCATCAAGGGATCAGACA
CAGATGTTTGTCAAGTTTTTAGACTCAGAAGGAACGCCAATGTAGGTTGA
CTTCCTTCAAGCAGGTGTTTTATTTTTTGCCACGCTTTTGTCTTAGTCGC
ATGCTTTGTGGCAGCTTGGAGCCCCAGTTCACCGATTGCAATGTAGGGCG
TCCTCTAACAGGCAATGCAGAGCATCTGTCTCCCTGGGATTTGAAGTGAG
GCCGATCCGCCAAGTAAGACCAGGAGTTGGGCGAATTTCGTGAGCCACTC
TACAGTCCTCGACAGACAACTTGGGGGTTGCGTTCAAAAATATTTCTACA
TCCGTTTTGGTTGCGCTTCTCTCTCACATTCCCGAAGCGCCGCGTCGCGC
CATGCTGTGCTGCGCGGTTCCAGGCCGGAGCTGTCGGAAGATGAGAAGGC
AAAAAACTTCGAGATCGGGCGGCGTTACCAGCGCGAAACATCGACGCGGA
ACAACGCGTGGGAAGCCGATATGGCAATGAAGATCGCCCTTCGAGATGAA
GCCATTGCCGCACTGCCCGTCCACCTGCAGGAGGCGGCGCTGCAGCCGGA
CGACGTCGGGCCGCCGCCCAACCGCCGGATCGCCACCATAACGCCGCCGA
TCCCAGGCTTTTCTCCGGAGAACTACCCGGAGCTGTGTGTCGGGGACCGA
TAATGCTGGGCTGAGCTGCTTGTGGAAAAAGAAAACAAGTTTCGGCTGCG
TGCGGCGGAGGCAAAACTGCTTGTGAACGGCGTCGCCTAAGGGCGCAGGG
AAAGTATCTAGAAGATGAGGGTCTGCTGGGTGCACTACGAAGGCCGGGCA
GGGAAAATGATTGATACCACAGGATACCACAAGTGGCATGCGACCGCTCA
AAGTCTTTCTGCACACATTGAGGTTAACTGATGCCCCTGTCATCGTTGGA
TGCAAATTTGCCTGCAACATGCAGGTCAAAATTGGAATACAACCTTTCTC
GGCGTGCAAGGAACATAACAAGAGGAAATCAAAGGAGCGTCCTTGCCGCC
GCACACTGGTTTGCTCGAAGAATGAAACACGTGTCACAGACTTTTGCACT
CATGGTTGGGACGTGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13546:78..1395-

>mRNA_P-wetherbeei_contig13546.1.1 ID=mRNA_P-wetherbeei_contig13546.1.1|Name=mRNA_P-wetherbeei_contig13546.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig13546:78..1395- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCTTTGTGCTCGTGCGGTGCGAAGCGGCCGCGGCCTGCTGCGGAA
GCGGCCCGGCGATTGCACGGCATCCGGACACGTTGGTGCTCTCCCGCAAT
GCACTGAGCCACGACGCGGTTTTGCCATCAAAAAGCAACCGACTCCGCAG
CGTGAACGAAAGGACAGCGCCAAAACTGCATCAAGGGATCAGACACAGAT
GTTTGTCAAGTTTTTAGACTCAGAAGGAACGCCAATGCCGGAGCTGTCGG
AAGATGAGAAGGCAAAAAACTTCGAGATCGGGCGGCGTTACCAGCGCGAA
ACATCGACGCGGAACAACGCGTGGGAAGCCGATATGGCAATGAAGATCGC
CCTTCGAGATGAAGCCATTGCCGCACTGCCCGTCCACCTGCAGGAGGCGG
CGCTGCAGCCGGACGACGTCGGGCCGCCGCCCAACCGCCGGATCGCCACC
ATAACGCCGCCGATCCCAGGCTTTTCTCCGGAGAACTACCCGGAGCTGTG
TGTCGGGGACCGATAA
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