mRNA_P-wetherbeei_contig1344.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1344.3.1
Unique NamemRNA_P-wetherbeei_contig1344.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1344.3.1 vs. uniprot
Match: A0A2D4CBC7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBC7_PYTIN)

HSP 1 Score: 118 bits (295), Expect = 4.820e-31
Identity = 54/137 (39.42%), Postives = 88/137 (64.23%), Query Frame = 1
Query:   70 ASRKLQDAVERMLENMERRDLRPLQQRTYSCMAKCYEDKRSPARQVSSCAEQCSMPAQRANEAIGQEMQEFQGRLQRCAMQCQDDAKERLPPGADPSDARFEAAKQQLESCTVRCIDKHIKQLPNIEARIQAVLNAI 480
            A +KL DAV +M++ ++R+ LR  Q+  Y C AKC+++K     Q+  C E+C MP Q+    +  E+Q FQ RLQRCAM+CQD A++ +P   +PSDA+  A ++ ++SC   C+D H+K LP ++ R++  +  +
Sbjct:    2 AEQKLNDAVSKMMDTLDRKVLRDFQKDGYVCAAKCFDNKSWSTEQLQHCVERCQMPMQQVQNYMQNELQSFQNRLQRCAMECQDRARDSMPSSGNPSDAQMAAIEKDMQSCFNHCVDSHLKLLPTLQKRVEDAVKQV 138          
BLAST of mRNA_P-wetherbeei_contig1344.3.1 vs. uniprot
Match: H3GXE3_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3GXE3_PHYRM)

HSP 1 Score: 115 bits (288), Expect = 5.820e-30
Identity = 58/131 (44.27%), Postives = 87/131 (66.41%), Query Frame = 1
Query:   70 ASRKLQDAVERMLENMERRDLRPLQQRTYSCMAKCYEDKRSPARQVSSCAEQCSMPAQRANEAIGQEMQEFQGRLQRCAMQCQDDAKERLPPGADPSDARFEAAKQQLESCTVRCIDKHIKQLPNIEARIQ 462
            A  KLQDAV +M++ ++R  LR +Q+  Y C AK +E+K   + Q+++  E+C MP Q+ N+ + QEMQ FQ R+QR    CQD A++ LP G +PS+A+   A++ +E C  RC+D HI  LPNI +RI+
Sbjct:    2 ADSKLQDAVTKMVDRLDRTILRSMQRDGYLCAAKVFENKNWSSDQLAAAVERCQMPTQQINQFMQQEMQNFQNRIQRGVQDCQDKAQDALPAGGNPSEAQIARAQKDMEKCVGRCVDSHISLLPNISSRIE 132          
BLAST of mRNA_P-wetherbeei_contig1344.3.1 vs. uniprot
Match: A0A8K1CFK9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFK9_PYTOL)

HSP 1 Score: 115 bits (287), Expect = 8.480e-30
Identity = 53/137 (38.69%), Postives = 88/137 (64.23%), Query Frame = 1
Query:   70 ASRKLQDAVERMLENMERRDLRPLQQRTYSCMAKCYEDKRSPARQVSSCAEQCSMPAQRANEAIGQEMQEFQGRLQRCAMQCQDDAKERLPPGADPSDARFEAAKQQLESCTVRCIDKHIKQLPNIEARIQAVLNAI 480
            A +KL DAV +M+++++R+ LR  Q+  Y C AKC+++K     Q+ +C E+C MP Q+    +  EMQ FQ RLQRCAM+CQD A++ +P   +PS+A+    ++ ++ C   C+D H+K LP +E R+   ++ +
Sbjct:    2 AEQKLNDAVSKMMDSLDRKVLRDFQKSGYVCAAKCFDNKGWNTEQIQNCVERCQMPMQQVQGYLQNEMQSFQNRLQRCAMECQDRARDSMPSNGNPSEAQMAGIEKDMQKCFNGCVDTHLKLLPTLEKRVTDAVSQV 138          
BLAST of mRNA_P-wetherbeei_contig1344.3.1 vs. uniprot
Match: A0A5D6YAH7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YAH7_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.170e-29
Identity = 58/133 (43.61%), Postives = 85/133 (63.91%), Query Frame = 1
Query:   70 ASRKLQDAVERMLENMERRDLRPLQQRTYSCMAKCYEDKRSPARQVSSCAEQCSMPAQRANEAIGQEMQEFQGRLQRCAMQCQDDAKERLPPGADPSDARFEAAKQQLESCTVRCIDKHIKQLPNIEARIQAV 468
            A  KL DA+ R ++ ++R  LR LQ+  Y C AKC+++K   A Q+  C E+C MP Q+    + QE+  FQ RLQRCAM CQD A++ LP    PSDA+  +A++ ++SC   C+D HIK LP ++ R +A+
Sbjct:    2 ADSKLNDAMTRTMDALDRSVLRELQRGGYVCSAKCFDNKNWSAEQLQHCVERCQMPPQQVQGFLQQELGAFQNRLQRCAMDCQDRARDALPASGQPSDAQLASAQKSMDSCVGSCVDTHIKLLPALQKRSEAL 134          
BLAST of mRNA_P-wetherbeei_contig1344.3.1 vs. uniprot
Match: A0A662WBT5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WBT5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.020e-29
Identity = 59/147 (40.14%), Postives = 90/147 (61.22%), Query Frame = 1
Query:   70 ASRKLQDAVERMLENMERRDLRPLQQRT----------YSCMAKCYEDKRSPARQVSSCAEQCSMPAQRANEAIGQEMQEFQGRLQRCAMQCQDDAKERLPPGADPSDARFEAAKQQLESCTVRCIDKHIKQLPNIEARIQAVLNAI 480
            A  K+ DAV +M++ ++R  LR LQ  T          Y C AKC+E+K   + Q+ SC E+C MP Q+ N+ + QEMQ FQ R+QRCA    D A++ LP   +PS+++   A++ +E+C  RC+D HI  LPNI +R++  +N +
Sbjct:    2 AENKMNDAVTKMVDRLDRTILRGLQVDTCIFIGLWRDGYLCAAKCFENKNWSSEQLQSCVERCQMPTQQVNQFMQQEMQNFQSRIQRCAXXXXDRAQDALPATGNPSESQIARAQKDMETCVGRCVDSHISLLPNISSRVEQAVNQV 148          
BLAST of mRNA_P-wetherbeei_contig1344.3.1 vs. uniprot
Match: G5AAL8_PHYSP (Uncharacterized protein (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=G5AAL8_PHYSP)

HSP 1 Score: 113 bits (282), Expect = 4.690e-29
Identity = 58/131 (44.27%), Postives = 87/131 (66.41%), Query Frame = 1
Query:   70 ASRKLQDAVERMLENMERRDLRPLQQRTYSCMAKCYEDKRSPARQVSSCAEQCSMPAQRANEAIGQEMQEFQGRLQRCAMQCQDDAKERLPPGADPSDARFEAAKQQLESCTVRCIDKHIKQLPNIEARIQ 462
            A  KLQDAV +M++ ++R  LR +Q+  Y C AK +E+K   + Q+++  E+C MP Q+ N+ + QEMQ FQ R+QR    CQD A++ LP G  P++A+   A++++E C   C+D HIK LPNI ARI+
Sbjct:    2 ADSKLQDAVNKMVDRLDRSVLRGMQRDGYLCAAKVFENKSWSSDQLAAAVERCQMPTQQINQFMQQEMQNFQHRIQRGVQDCQDRAQDSLPAGGAPNEAQIARAQKEMEKCVSSCVDAHIKLLPNINARIE 132          
BLAST of mRNA_P-wetherbeei_contig1344.3.1 vs. uniprot
Match: W4G4L4_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G4L4_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.910e-27
Identity = 54/136 (39.71%), Postives = 85/136 (62.50%), Query Frame = 1
Query:   70 ASRKLQDAVERMLENMERRDLRPLQQRTYSCMAKCYEDKRSPARQVSSCAEQCSMPAQRANEAIGQEMQEFQGRLQRCAMQCQDDAKERLPPGADPSDARFEAAKQQLESCTVRCIDKHIKQLPNIEARIQAVLNA 477
            A   +  AV +M+E++++   RPLQ+  Y C  KC+++K   A Q+  C E+C  P  +    + QEMQ FQ RLQRCAM+CQD AK+ L   + PS+++  AA+  +E C  +C+D HIK LP ++ RI+  +++
Sbjct:    2 AEADINQAVAKMMESLDKGTFRPLQRNAYVCSVKCFDNKDVSAEQLQHCIERCQQPMAQVQNYMSQEMQTFQNRLQRCAMECQDRAKDSL--SSQPSESQISAAQAGMEKCVSKCVDGHIKLLPTLKKRIEDTVSS 135          
BLAST of mRNA_P-wetherbeei_contig1344.3.1 vs. uniprot
Match: A0A1I8MCG9_MUSDO (Uncharacterized protein n=4 Tax=Calyptratae TaxID=43742 RepID=A0A1I8MCG9_MUSDO)

HSP 1 Score: 106 bits (264), Expect = 2.710e-26
Identity = 54/138 (39.13%), Postives = 81/138 (58.70%), Query Frame = 1
Query:   58 MSEDASRKLQDAVERMLENMERRDLRPLQQRTYSCMAKCYEDKRSPARQVSSCAEQCSMPAQRANEAIGQEMQEFQGRLQRCAMQCQDDAKERLPPGADPSDARFEAAKQQLESCTVRCIDKHIKQLPNIEARIQAVL 471
            M +   ++++ AV  M+ +M+R  LR +Q   + C AKC +D  +    V +C E+CS P  RA   +  E+ EFQGRLQRC MQC DD K ++PP  +PS+        Q E C V+C+DKH+  +P +   ++AVL
Sbjct:    1 MIQQQRQRIEQAVTEMINDMDRTHLRKMQTDMHLCAAKCCQDTSASVDNVQNCVERCSAPLTRAQNYVQHELGEFQGRLQRCVMQCNDDVKVKMPP--NPSEEEISKYTDQFERCAVKCVDKHVGLIPTMMKTMKAVL 136          
BLAST of mRNA_P-wetherbeei_contig1344.3.1 vs. uniprot
Match: A0A6I8UUJ5_DROPS (protein FAM136A n=4 Tax=Sophophora TaxID=32341 RepID=A0A6I8UUJ5_DROPS)

HSP 1 Score: 105 bits (261), Expect = 7.880e-26
Identity = 52/143 (36.36%), Postives = 84/143 (58.74%), Query Frame = 1
Query:   55 IMSEDASRKLQDAVERMLENMERRDLRPLQQRTYSCMAKCYEDKRSPARQVSSCAEQCSMPAQRANEAIGQEMQEFQGRLQRCAMQCQDDAKERLPPGADPSDARFEAAKQQLESCTVRCIDKHIKQLPNIEARIQAVLNAIP 483
            +M +   ++++ AV  M+++M++  LR +Q   + C AKC +D  S    V  C ++CS P  RA   +  E+ EFQGRLQRC MQC DD K ++PP   PS+ +      Q E C ++C+DKH+  +P++   ++ VL+  P
Sbjct:    1 MMIQQQRQRIESAVTEMIDDMDKTHLRKMQNEMHLCAAKCCQDDTSSVDSVQRCVDRCSTPMTRAQNYVQHELGEFQGRLQRCVMQCNDDVKVKMPPS--PSEEQIAKYTDQFERCAIQCVDKHVGLIPSMMKTMKKVLSKGP 141          
BLAST of mRNA_P-wetherbeei_contig1344.3.1 vs. uniprot
Match: A0A024GGH9_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GGH9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 9.710e-26
Identity = 49/131 (37.40%), Postives = 82/131 (62.60%), Query Frame = 1
Query:   70 ASRKLQDAVERMLENMERRDLRPLQQRTYSCMAKCYEDKRSPARQVSSCAEQCSMPAQRANEAIGQEMQEFQGRLQRCAMQCQDDAKERLPPGADPSDARFEAAKQQLESCTVRCIDKHIKQLPNIEARIQ 462
            A +K+ DAV  M+E ++ + +R  Q+R Y C A+C++DK S + Q+ +C E+C  P Q+    I QE+Q FQ RLQRCAM CQD A++ +P             ++++E+C  +C+DK I+ +P ++ R++
Sbjct:    2 AEQKINDAVHGMMEQLDVKFIRDFQKRGYLCSAQCFDDKTSSSEQIQNCVERCQFPMQQLQNVIQQELQSFQNRLQRCAMDCQDRARDSIPINEKVDHMTQSRMQKEMEACVGQCVDKQIQCIPTLQKRLE 132          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1344.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4CBC7_PYTIN4.820e-3139.42Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
H3GXE3_PHYRM5.820e-3044.27Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A8K1CFK9_PYTOL8.480e-3038.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6YAH7_9STRA1.170e-2943.61Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A662WBT5_9STRA3.020e-2940.14Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
G5AAL8_PHYSP4.690e-2944.27Uncharacterized protein (Fragment) n=3 Tax=Phytoph... [more]
W4G4L4_9STRA1.910e-2739.71Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A1I8MCG9_MUSDO2.710e-2639.13Uncharacterized protein n=4 Tax=Calyptratae TaxID=... [more]
A0A6I8UUJ5_DROPS7.880e-2636.36protein FAM136A n=4 Tax=Sophophora TaxID=32341 Rep... [more]
A0A024GGH9_9STRA9.710e-2637.40Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1344contigP-wetherbeei_contig1344:6237..6846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog115417.EPrPW00000022011
PFAMsDUF842
Model size492
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.55e-34
EggNOG OGsKOG3377@1|root,KOG3377@2759|Eukaryota,1MHEN@121069|Pythiales
DescriptionSource PGD
Cds size492
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185985.4902086-CDS-P-wetherbeei_contig1344:6236..64431683185985.4902086-CDS-P-wetherbeei_contig1344:6236..6443Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1344 6237..6443 -
1683185985.501364-CDS-P-wetherbeei_contig1344:6561..68461683185985.501364-CDS-P-wetherbeei_contig1344:6561..6846Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1344 6562..6846 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1344.3.1prot_P-wetherbeei_contig1344.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1344 6237..6846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1344.3.1

>prot_P-wetherbeei_contig1344.3.1 ID=prot_P-wetherbeei_contig1344.3.1|Name=mRNA_P-wetherbeei_contig1344.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
LKNTTCSKPVLDSAALIAIMSEDASRKLQDAVERMLENMERRDLRPLQQR
TYSCMAKCYEDKRSPARQVSSCAEQCSMPAQRANEAIGQEMQEFQGRLQR
CAMQCQDDAKERLPPGADPSDARFEAAKQQLESCTVRCIDKHIKQLPNIE
ARIQAVLNAIPPR*
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mRNA from alignment at P-wetherbeei_contig1344:6237..6846-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1344.3.1 ID=mRNA_P-wetherbeei_contig1344.3.1|Name=mRNA_P-wetherbeei_contig1344.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=610bp|location=Sequence derived from alignment at P-wetherbeei_contig1344:6237..6846- (Phaeothamnion wetherbeei SAG_119_79)
CTCAAGAACACCACTTGTTCTAAACCTGTTCTCGACTCTGCTGCACTCAT CGCAATCATGAGTGAAGATGCCTCACGCAAGTTGCAAGACGCAGTGGAAA GGATGCTGGAAAATATGGAGCGACGGGACCTGAGGCCGCTTCAGCAGCGA ACCTATTCGTGCATGGCCAAATGCTACGAGGATAAGAGATCGCCCGCTAG GCAGGTCTCCAGCTGCGCCGAGCAATGTAGCATGCCCGCCCAGCGAGCAA ACGAGGCCATCGGGCAAGAGATGCAAGAGTTTCAGGTAATTTCTTCTCGA GCCCTGTCTTCTTCCTCACGAGATCCTCACTGAAGTTCCATTCATTCGTC CTCGTTCTGTCTCCATTCCGTCCTTCCAACCCGACACTTTTTAACGAGGA CAGGGGCGGCTCCAGCGGTGCGCGATGCAGTGCCAGGACGACGCAAAGGA GCGGCTGCCGCCGGGAGCGGATCCAAGCGATGCACGCTTCGAAGCGGCGA AGCAGCAATTAGAAAGCTGCACTGTCCGCTGCATAGACAAGCACATCAAG CAGCTGCCGAACATAGAGGCTCGAATCCAAGCTGTCCTCAATGCCATCCC TCCACGATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1344:6237..6846-

>mRNA_P-wetherbeei_contig1344.3.1 ID=mRNA_P-wetherbeei_contig1344.3.1|Name=mRNA_P-wetherbeei_contig1344.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig1344:6237..6846- (Phaeothamnion wetherbeei SAG_119_79)
CTCAAGAACACCACTTGTTCTAAACCTGTTCTCGACTCTGCTGCACTCAT
CGCAATCATGAGTGAAGATGCCTCACGCAAGTTGCAAGACGCAGTGGAAA
GGATGCTGGAAAATATGGAGCGACGGGACCTGAGGCCGCTTCAGCAGCGA
ACCTATTCGTGCATGGCCAAATGCTACGAGGATAAGAGATCGCCCGCTAG
GCAGGTCTCCAGCTGCGCCGAGCAATGTAGCATGCCCGCCCAGCGAGCAA
ACGAGGCCATCGGGCAAGAGATGCAAGAGTTTCAGGGGCGGCTCCAGCGG
TGCGCGATGCAGTGCCAGGACGACGCAAAGGAGCGGCTGCCGCCGGGAGC
GGATCCAAGCGATGCACGCTTCGAAGCGGCGAAGCAGCAATTAGAAAGCT
GCACTGTCCGCTGCATAGACAAGCACATCAAGCAGCTGCCGAACATAGAG
GCTCGAATCCAAGCTGTCCTCAATGCCATCCCTCCACGATAG
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