mRNA_P-wetherbeei_contig13353.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13353.1.1
Unique NamemRNA_P-wetherbeei_contig13353.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13353.1.1 vs. uniprot
Match: A0A7Z9PWR5_9BACT (HU family DNA-binding protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PWR5_9BACT)

HSP 1 Score: 135 bits (340), Expect = 1.050e-39
Identity = 67/89 (75.28%), Postives = 80/89 (89.89%), Query Frame = 1
Query:    1 MGKADLINAIADKSNRSKKDAAETLNIVLETIQENLKKGKGIRLIPFGSFEIRERKGRTGRNPRTGDKITIKARKVPAFRPGKALRDSV 267
            +GKA+LI  IA+K N SKK+A +TLN+VLETIQE+L KG G+RLIPFGSFE+RERKGRTGRNPRTG++I I ARKVPAF+PGKALRD+V
Sbjct:    2 VGKAELIADIAEKHNCSKKEATDTLNVVLETIQEHLTKGNGVRLIPFGSFEVRERKGRTGRNPRTGEEIKIAARKVPAFKPGKALRDAV 90          
BLAST of mRNA_P-wetherbeei_contig13353.1.1 vs. uniprot
Match: A0A7X8XKN3_9BURK (HU family DNA-binding protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XKN3_9BURK)

HSP 1 Score: 127 bits (320), Expect = 1.540e-36
Identity = 67/90 (74.44%), Postives = 76/90 (84.44%), Query Frame = 1
Query:    1 MGKADLINAIADKSNRSKKDAAETLNIVLETIQENLKKGKGIRLIPFGSFEIRERKGRTGRNPRTGDKITIKARKVPAFRPGKALRDSVK 270
            +GKADLI  IA+K   SKKDA   LN VLE+IQ++LKKG+G+RLIPFGSFEIRERK R GRNP TG +I IKARKVPAFRPGKALR+SVK
Sbjct:   11 VGKADLIGDIANKMEVSKKDAGLMLNAVLESIQDHLKKGEGVRLIPFGSFEIRERKARLGRNPSTGKEIKIKARKVPAFRPGKALRESVK 100          
BLAST of mRNA_P-wetherbeei_contig13353.1.1 vs. uniprot
Match: A0A6N8HUD4_9BACI (DNA-binding protein HU-1 n=2 Tax=Lentibacillus TaxID=175304 RepID=A0A6N8HUD4_9BACI)

HSP 1 Score: 110 bits (274), Expect = 1.170e-29
Identity = 51/90 (56.67%), Postives = 75/90 (83.33%), Query Frame = 1
Query:    1 MGKADLINAIADKSNRSKKDAAETLNIVLETIQENLKKGKGIRLIPFGSFEIRERKGRTGRNPRTGDKITIKARKVPAFRPGKALRDSVK 270
            M K DL+NA+A++S+ SKKDAA+ ++ V +++ ++LKKG+ ++LI FG+FE+RER  R GRNP+TG++I I A KVPAF+PGKAL+D+VK
Sbjct:    1 MNKTDLVNAVAEQSDLSKKDAAKAVDAVFDSVMDSLKKGEKVQLIGFGNFEVRERSARKGRNPQTGEEIEIPASKVPAFKPGKALKDAVK 90          
BLAST of mRNA_P-wetherbeei_contig13353.1.1 vs. uniprot
Match: A0A024QC63_9BACI (Uncharacterized protein n=112 Tax=Bacilli TaxID=91061 RepID=A0A024QC63_9BACI)

HSP 1 Score: 109 bits (272), Expect = 2.360e-29
Identity = 51/90 (56.67%), Postives = 73/90 (81.11%), Query Frame = 1
Query:    1 MGKADLINAIADKSNRSKKDAAETLNIVLETIQENLKKGKGIRLIPFGSFEIRERKGRTGRNPRTGDKITIKARKVPAFRPGKALRDSVK 270
            M K DL+NA+A+KS  SKKDA + ++ V +++ ++L+KG+ ++LI FG+FE+RER  R GRNP+TG++I I A KVPAF+PGKAL+DSVK
Sbjct:    1 MNKTDLVNAVAEKSELSKKDATKAVDAVFDSVMDSLQKGEKVQLIGFGNFEVRERSARKGRNPQTGEEIEIPASKVPAFKPGKALKDSVK 90          
BLAST of mRNA_P-wetherbeei_contig13353.1.1 vs. uniprot
Match: A0A6N8FJ50_9BACI (DNA-binding protein n=1 Tax=Ornithinibacillus caprae TaxID=2678566 RepID=A0A6N8FJ50_9BACI)

HSP 1 Score: 108 bits (271), Expect = 3.350e-29
Identity = 52/90 (57.78%), Postives = 72/90 (80.00%), Query Frame = 1
Query:    1 MGKADLINAIADKSNRSKKDAAETLNIVLETIQENLKKGKGIRLIPFGSFEIRERKGRTGRNPRTGDKITIKARKVPAFRPGKALRDSVK 270
            M K +L+NA+A+KS  SKKDA + ++ V E+I E+LK G  ++LI FG+FE+RER  RTGRNP+TG++I I A KVPAF+PGKAL+++VK
Sbjct:    1 MNKTELVNAVAEKSELSKKDATKVVDAVFESISESLKNGDKVQLIGFGNFEVRERSARTGRNPQTGEEIQIAASKVPAFKPGKALKEAVK 90          
BLAST of mRNA_P-wetherbeei_contig13353.1.1 vs. uniprot
Match: A0A0U4FBV1_9BACI (DNA-binding protein n=5 Tax=Lentibacillus TaxID=175304 RepID=A0A0U4FBV1_9BACI)

HSP 1 Score: 108 bits (270), Expect = 4.760e-29
Identity = 51/90 (56.67%), Postives = 73/90 (81.11%), Query Frame = 1
Query:    1 MGKADLINAIADKSNRSKKDAAETLNIVLETIQENLKKGKGIRLIPFGSFEIRERKGRTGRNPRTGDKITIKARKVPAFRPGKALRDSVK 270
            M K DL+NA+++KS  SKKDA + ++ V E++ ++LKKG+ ++LI FG+FE+RER  R GRNP+TG++I I A KVPAF+PGKAL++SVK
Sbjct:    1 MNKTDLVNAVSEKSELSKKDATKAVDAVFESVMDSLKKGEKVQLIGFGNFEVRERSERKGRNPQTGEEIKIPASKVPAFKPGKALKESVK 90          
BLAST of mRNA_P-wetherbeei_contig13353.1.1 vs. uniprot
Match: UPI000F4AA77A (HU family DNA-binding protein n=1 Tax=Ornithinibacillus gellani TaxID=2293253 RepID=UPI000F4AA77A)

HSP 1 Score: 108 bits (270), Expect = 4.760e-29
Identity = 54/90 (60.00%), Postives = 70/90 (77.78%), Query Frame = 1
Query:    1 MGKADLINAIADKSNRSKKDAAETLNIVLETIQENLKKGKGIRLIPFGSFEIRERKGRTGRNPRTGDKITIKARKVPAFRPGKALRDSVK 270
            M K DLINA+ADKS  SKKDA + ++ V E I ++L KG+ ++LI FG+FE+RER  R GRNP+TG++I I A KVPAF+ GKAL+DSVK
Sbjct:    1 MNKTDLINAVADKSELSKKDAGKAVDAVFEAIMDSLSKGEKVQLIGFGNFEVRERAARKGRNPQTGEEIEIAASKVPAFKAGKALKDSVK 90          
BLAST of mRNA_P-wetherbeei_contig13353.1.1 vs. uniprot
Match: UPI00098837C2 (HU family DNA-binding protein n=1 Tax=Sediminibacillus massiliensis TaxID=1926277 RepID=UPI00098837C2)

HSP 1 Score: 108 bits (269), Expect = 6.760e-29
Identity = 51/90 (56.67%), Postives = 72/90 (80.00%), Query Frame = 1
Query:    1 MGKADLINAIADKSNRSKKDAAETLNIVLETIQENLKKGKGIRLIPFGSFEIRERKGRTGRNPRTGDKITIKARKVPAFRPGKALRDSVK 270
            M K DLINA+ +++  SKKD+ + ++ VLETI E+L  G+G++LI FG+FE+RER  R GRNP+TG+++ I A KVPAF+PGKAL+D+VK
Sbjct:    1 MNKTDLINAVTERAELSKKDSTKVVDSVLETITESLSNGEGVQLIGFGNFEVRERSARKGRNPQTGEEMEIPASKVPAFKPGKALKDAVK 90          
BLAST of mRNA_P-wetherbeei_contig13353.1.1 vs. uniprot
Match: W7AZP0_9LIST (DNA-binding protein n=17 Tax=Listeriaceae TaxID=186820 RepID=W7AZP0_9LIST)

HSP 1 Score: 107 bits (268), Expect = 9.870e-29
Identity = 52/88 (59.09%), Postives = 70/88 (79.55%), Query Frame = 1
Query:    7 KADLINAIADKSNRSKKDAAETLNIVLETIQENLKKGKGIRLIPFGSFEIRERKGRTGRNPRTGDKITIKARKVPAFRPGKALRDSVK 270
            K DL+N++A+K+  SKKDAA+ +  V ET+QE L KG+ ++LI FG+FE+RER  R GRNPRT ++I I A KVPAF+PGKAL+D+VK
Sbjct:    4 KTDLVNSVAEKAELSKKDAAKAVEAVFETVQEKLSKGEKVQLIGFGNFEVRERAARKGRNPRTKEEIDIPASKVPAFKPGKALKDAVK 91          
BLAST of mRNA_P-wetherbeei_contig13353.1.1 vs. uniprot
Match: I0JNB2_HALH3 (DNA-binding protein HU n=31 Tax=Bacillaceae TaxID=186817 RepID=I0JNB2_HALH3)

HSP 1 Score: 107 bits (267), Expect = 1.360e-28
Identity = 51/90 (56.67%), Postives = 73/90 (81.11%), Query Frame = 1
Query:    1 MGKADLINAIADKSNRSKKDAAETLNIVLETIQENLKKGKGIRLIPFGSFEIRERKGRTGRNPRTGDKITIKARKVPAFRPGKALRDSVK 270
            M K DLINA+++K++ SKKDA + ++ V E+I ++LK G+ ++LI FG+FE+RER  R GRNP+TG++I I A KVPAF+PGKAL+D+VK
Sbjct:    1 MNKTDLINAVSEKTDLSKKDATQAVDSVFESIMDSLKDGEKVQLIGFGNFEVRERAARKGRNPQTGEEIEISASKVPAFKPGKALKDAVK 90          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13353.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Z9PWR5_9BACT1.050e-3975.28HU family DNA-binding protein n=1 Tax=Phycisphaera... [more]
A0A7X8XKN3_9BURK1.540e-3674.44HU family DNA-binding protein n=1 Tax=Burkholderia... [more]
A0A6N8HUD4_9BACI1.170e-2956.67DNA-binding protein HU-1 n=2 Tax=Lentibacillus Tax... [more]
A0A024QC63_9BACI2.360e-2956.67Uncharacterized protein n=112 Tax=Bacilli TaxID=91... [more]
A0A6N8FJ50_9BACI3.350e-2957.78DNA-binding protein n=1 Tax=Ornithinibacillus capr... [more]
A0A0U4FBV1_9BACI4.760e-2956.67DNA-binding protein n=5 Tax=Lentibacillus TaxID=17... [more]
UPI000F4AA77A4.760e-2960.00HU family DNA-binding protein n=1 Tax=Ornithinibac... [more]
UPI00098837C26.760e-2956.67HU family DNA-binding protein n=1 Tax=Sediminibaci... [more]
W7AZP0_9LIST9.870e-2959.09DNA-binding protein n=17 Tax=Listeriaceae TaxID=18... [more]
I0JNB2_HALH31.360e-2856.67DNA-binding protein HU n=31 Tax=Bacillaceae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13353contigP-wetherbeei_contig13353:1047..1319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog981383.AEWH01000036_gene952
Preferred namehup
PFAMsBac_DNA_binding
Model size273
Max annot lvl91061|Bacilli
KEGG koko:K03530
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.72e-31
EggNOG OGsCOG0776@1|root,COG0776@2|Bacteria,1V9XQ@1239|Firmicutes,4HKF2@91061|Bacilli
DescriptionHistone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions
Cds size273
COG categoryL
BRITEko00000,ko03032,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185982.3706937-CDS-P-wetherbeei_contig13353:1046..13191683185982.3706937-CDS-P-wetherbeei_contig13353:1046..1319Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13353 1047..1319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13353.1.1prot_P-wetherbeei_contig13353.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13353 1047..1319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13353.1.1

>prot_P-wetherbeei_contig13353.1.1 ID=prot_P-wetherbeei_contig13353.1.1|Name=mRNA_P-wetherbeei_contig13353.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
MGKADLINAIADKSNRSKKDAAETLNIVLETIQENLKKGKGIRLIPFGSF
EIRERKGRTGRNPRTGDKITIKARKVPAFRPGKALRDSVK*
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mRNA from alignment at P-wetherbeei_contig13353:1047..1319+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13353.1.1 ID=mRNA_P-wetherbeei_contig13353.1.1|Name=mRNA_P-wetherbeei_contig13353.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig13353:1047..1319+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCAAGGCCGATCTGATCAATGCGATCGCTGACAAATCGAATCGGTC CAAAAAAGACGCTGCCGAAACCCTCAATATCGTCCTCGAAACCATCCAGG AGAACCTGAAAAAGGGCAAAGGCATCCGCCTCATCCCCTTCGGCAGCTTC GAGATCCGTGAGCGTAAGGGTCGCACCGGTCGCAATCCTCGCACTGGCGA CAAGATCACGATCAAAGCACGCAAGGTGCCCGCTTTCCGTCCCGGCAAAG CTCTCCGTGACAGCGTAAAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13353:1047..1319+

>mRNA_P-wetherbeei_contig13353.1.1 ID=mRNA_P-wetherbeei_contig13353.1.1|Name=mRNA_P-wetherbeei_contig13353.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig13353:1047..1319+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCAAGGCCGATCTGATCAATGCGATCGCTGACAAATCGAATCGGTC
CAAAAAAGACGCTGCCGAAACCCTCAATATCGTCCTCGAAACCATCCAGG
AGAACCTGAAAAAGGGCAAAGGCATCCGCCTCATCCCCTTCGGCAGCTTC
GAGATCCGTGAGCGTAAGGGTCGCACCGGTCGCAATCCTCGCACTGGCGA
CAAGATCACGATCAAAGCACGCAAGGTGCCCGCTTTCCGTCCCGGCAAAG
CTCTCCGTGACAGCGTAAAGTAG
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