mRNA_P-wetherbeei_contig13342.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13342.1.1
Unique NamemRNA_P-wetherbeei_contig13342.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13342.1.1 vs. uniprot
Match: D7FYT0_ECTSI (Tub domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYT0_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 7.940e-18
Identity = 37/58 (63.79%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    7 LRCFLERDRGGTNVVNPVFTLYADLADGNGRLLMAARKVVRSVKAYYIICLRREDLFQ 180
            LRCF+ERDR GT+  +PVF++YADL DG+GR+L+AARK++ S  AYY IC R+EDLF+
Sbjct:  246 LRCFIERDRSGTHKFSPVFSMYADLGDGSGRMLLAARKLLASKTAYYTICTRQEDLFK 303
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BLAST of mRNA_P-wetherbeei_contig13342.1.1 vs. uniprot
Match: A0A482S1Y1_9ARCH (Tub domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1Y1_9ARCH)

HSP 1 Score: 65.5 bits (158), Expect = 6.300e-11
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 VALRCFLERDRGGTNVVNPVFTLYADLADGNGRLLMAARKVVRSVKAYYIICLRREDLFQ 180
            +  RC++ER+R G+ ++ P F+L ADL DG GR LM  RKV++S  A+YI  L+ EDL++
Sbjct:  286 ITTRCYIERNRSGSKMLAPYFSLCADLEDGTGRELMVCRKVLQSRSAHYIFSLKAEDLWR 345
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BLAST of mRNA_P-wetherbeei_contig13342.1.1 vs. uniprot
Match: A0A7S3HAI2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HAI2_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.470e-9
Identity = 26/57 (45.61%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   10 RCFLERDRGGTNVVNPVFTLYADLADGNGRLLMAARKVVRSVKAYYIICLRREDLFQ 180
            +C++ER+R G+ ++ P +++ ADL DG GR LM  RKV+RS   +YI  L+ EDL++
Sbjct:  161 KCYIERNRSGSKMLAPYYSICADLDDGTGRELMVCRKVMRSRSPHYIFSLKSEDLWR 217
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BLAST of mRNA_P-wetherbeei_contig13342.1.1 vs. uniprot
Match: A0A836C912_9STRA (Tubby C-terminal-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C912_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.420e-8
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 1 
Query:    7 LRCFLERDRGG--------------TNVVNPVFTLYADLADGNGRLLMAARKVVRSVKAYYIICLRREDLF 177
            L+CF+ER R                T  + P+++LY ++ DG  RLLMAARKV++S   +YII  RR+DLF
Sbjct:  430 LQCFIERSRASMGTTSAFMLPIAMPTLSLTPIYSLYVEMPDGTVRLLMAARKVLKSKTPHYIISTRRDDLF 500
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13342.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FYT0_ECTSI7.940e-1863.79Tub domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A482S1Y1_9ARCH6.300e-1148.33Tub domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A7S3HAI2_9STRA2.470e-945.61Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A836C912_9STRA3.420e-842.25Tubby C-terminal-like domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13342contigP-wetherbeei_contig13342:212..662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FYT0
PFAMsTub
Model size189
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.3e-18
EggNOG OGsKOG2502@1|root,KOG2502@2759|Eukaryota
Descriptionphosphatidylinositol binding
Cds size189
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185982.079512-CDS-P-wetherbeei_contig13342:211..3521683185982.079512-CDS-P-wetherbeei_contig13342:211..352Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13342 212..352 -
1683185982.0912883-CDS-P-wetherbeei_contig13342:614..6621683185982.0912883-CDS-P-wetherbeei_contig13342:614..662Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13342 615..662 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13342.1.1prot_P-wetherbeei_contig13342.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13342 212..662 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13342.1.1

>prot_P-wetherbeei_contig13342.1.1 ID=prot_P-wetherbeei_contig13342.1.1|Name=mRNA_P-wetherbeei_contig13342.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
VALRCFLERDRGGTNVVNPVFTLYADLADGNGRLLMAARKVVRSVKAYYI
ICLRREDLFQWT*
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mRNA from alignment at P-wetherbeei_contig13342:212..662-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13342.1.1 ID=mRNA_P-wetherbeei_contig13342.1.1|Name=mRNA_P-wetherbeei_contig13342.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=451bp|location=Sequence derived from alignment at P-wetherbeei_contig13342:212..662- (Phaeothamnion wetherbeei SAG_119_79)
GTGGCGCTGCGCTGCTTCCTTGAGCGCGACCGCGGCGGCACCAACGTGGT
GAGTGTTTCCACGTCATTTCTGCTGCTTTTCTGTAACGCTAATGATTGGA
AAAATTCCGCCCTACTTTTTTCCACTGTCTGCAGCCTCGCAATGCAGCCA
GCCAGAAAGTGCTCGCAGCGGCCAGGCCCGCGACTATTAGCGTCTCAAAC
CGCTAAGTTCTAAATGAATAGCCAAAAAACTGCGCCGGCAAACGCCCGTG
TTTGTCGTGCTGGCCGTTCCAGTCTGATGCGCCGGCGCCGCCTTCCTTTG
TTATGTGAAGGTGAATCCGGTGTTCACGCTTTACGCGGACCTGGCGGATG
GCAACGGGCGGCTGCTGATGGCGGCTCGCAAGGTGGTGCGGAGCGTCAAG
GCGTACTACATCATCTGCCTCCGTCGGGAGGACCTCTTCCAGTGGACGTG
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13342:212..662-

>mRNA_P-wetherbeei_contig13342.1.1 ID=mRNA_P-wetherbeei_contig13342.1.1|Name=mRNA_P-wetherbeei_contig13342.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig13342:212..662- (Phaeothamnion wetherbeei SAG_119_79)
GTGGCGCTGCGCTGCTTCCTTGAGCGCGACCGCGGCGGCACCAACGTGGT
GAATCCGGTGTTCACGCTTTACGCGGACCTGGCGGATGGCAACGGGCGGC
TGCTGATGGCGGCTCGCAAGGTGGTGCGGAGCGTCAAGGCGTACTACATC
ATCTGCCTCCGTCGGGAGGACCTCTTCCAGTGGACGTGA
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