mRNA_P-wetherbeei_contig13278.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13278.2.1
Unique NamemRNA_P-wetherbeei_contig13278.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13278.2.1 vs. uniprot
Match: A0A3C0TTU2_9PROT (Peptidase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TTU2_9PROT)

HSP 1 Score: 201 bits (511), Expect = 2.280e-63
Identity = 108/161 (67.08%), Postives = 128/161 (79.50%), Query Frame = 1
Query:   31 LILFALLFFGIMAAAAVYDLISYTIPNFLSLLLIGGFAVLALMLALPWQLVLSHAGAGLAMLAIGWGMFAIGLLGGGDAKLFAATSLWMGWGGIINYLIIFSICGGLLALCLILFRRIALPAGLAEMTWIATLHDKKQGVPYGIALAAGAMLAPPALLAAA 513
            ++L  LLFFGIMAAAA+ DLISY IPN L +LL+  F     + A+ W +VLSH GAGLAMLAIGW +FA+ LLGGGDAKLFAA SLWMGW G+ NYLIIFSICGG+LAL L++FRR++LP  L+   WIA+LHDK QGVPYGIALAAGA+L  P LL+ A
Sbjct:    1 MVLIPLLFFGIMAAAAISDLISYRIPNILPVLLLALFVAAIPLTAMSWPVVLSHLGAGLAMLAIGWVLFALNLLGGGDAKLFAAISLWMGWEGLANYLIIFSICGGVLALLLLMFRRLSLPGRLSATPWIASLHDKNQGVPYGIALAAGALLTRPELLSIA 161          
BLAST of mRNA_P-wetherbeei_contig13278.2.1 vs. uniprot
Match: A0A2E5BRI8_9HYPH (Peptidase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E5BRI8_9HYPH)

HSP 1 Score: 142 bits (359), Expect = 2.590e-40
Identity = 78/150 (52.00%), Postives = 99/150 (66.00%), Query Frame = 1
Query:   46 LLFFGIMAAAAVYDLISYTIPNFLSLLLIGGFAVLALMLALPWQLVLSHAGAGLAMLAIGWGMFAIGLLGGGDAKLFAATSLWMGWGGIINYLIIFSICGGLLALCLILFRRIALPAGLAEMTWIATLHDKKQGVPYGIALAAGAMLAPP 495
            L F  ++  AAV DL++Y IPN+LSL L+  F V  L   + W     HAG GL +L +G  +F+  LLGGGDAKL AA  +WMGW     YL+  +  GGLLALCL+LFRR  LPAGL    W+A LHD++ G+PYGIALA GA++A P
Sbjct:    2 LAFPALLVVAAVGDLMTYRIPNWLSLALLALFCVAVLXSDMTWLQAGIHAGIGLVLLGVGMALFSYNLLGGGDAKLLAAAGVWMGWTAXPAYLVWTAFAGGLLALCLVLFRRTPLPAGLPLSPWVARLHDRQAGIPYGIALAVGALMALP 151          
BLAST of mRNA_P-wetherbeei_contig13278.2.1 vs. uniprot
Match: A0A0D7EWG4_RHOPL (Peptidase n=1 Tax=Rhodopseudomonas palustris TaxID=1076 RepID=A0A0D7EWG4_RHOPL)

HSP 1 Score: 139 bits (351), Expect = 6.360e-39
Identity = 78/150 (52.00%), Postives = 107/150 (71.33%), Query Frame = 1
Query:   46 LLFFGIMAAAAVYDLISYTIPNFLSLLLIGGFAVLALMLALPWQLVLSHAGAGLAMLAIGWGMFAIGLLGGGDAKLFAATSLWMGWGGIINYLIIFSICGGLLALCLILFRRIALPAGLAEMTWIATLHDKKQGVPYGIALAAGAMLAPP 495
            +LF  +MA AA  DL + TI N +SLLL+ GF VLA++  +  + +LSHAGAGLA+LA+ +G FA+G +GGGDAK+ AAT LW G+G +++YL+  S+ GG L L L+ FR   LP  LA  TW+  LH+K+ G+PYGIALA GA++  P
Sbjct:    9 MLFPALMAFAAASDLFTMTISNRVSLLLVAGFVVLAILSHMSGEDLLSHAGAGLAVLAVAFGCFAMGWVGGGDAKIAAATGLWFGFGHLLDYLLYASLFGGALTLALLQFREWPLPHQLAGETWLLRLHNKESGIPYGIALAIGALMIYP 158          
BLAST of mRNA_P-wetherbeei_contig13278.2.1 vs. uniprot
Match: A0A355T2K0_9HYPH (Peptidase_A24 domain-containing protein n=2 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A355T2K0_9HYPH)

HSP 1 Score: 135 bits (341), Expect = 1.780e-37
Identity = 72/149 (48.32%), Postives = 99/149 (66.44%), Query Frame = 1
Query:   49 LFFGIMAAAAVYDLISYTIPNFLSLLLIGGFAVLALMLALPWQLVLSHAGAGLAMLAIGWGMFAIGLLGGGDAKLFAATSLWMGWGGIINYLIIFSICGGLLALCLILFRRIALPAGLAEMTWIATLHDKKQGVPYGIALAAGAMLAPP 495
            +F  ++  AAV DL+++ IPN++SL L+G F V      + W ++  H   GLA+L  G  MFA+ LLGGGDAKL AA  LW+GW  +  YL   +I GGLLAL L++FRR+ + A +    WI+ LHD++ G+PYGIALAAGA+ A P
Sbjct:    9 IFPALLIVAAVSDLLTFRIPNWVSLALVGLFVVAVSFAGMSWAMIAGHVALGLALLFAGMAMFAMNLLGGGDAKLMAAIGLWIGWPSLPVYLAWTAIIGGLLALSLLMFRRVPMAAAMQTRPWISRLHDREAGIPYGIALAAGALFALP 157          
BLAST of mRNA_P-wetherbeei_contig13278.2.1 vs. uniprot
Match: UPI001FCCC6E6 (prepilin peptidase n=1 Tax=Hyphomicrobium sp. CS1BSMeth3 TaxID=1892844 RepID=UPI001FCCC6E6)

HSP 1 Score: 134 bits (338), Expect = 4.630e-37
Identity = 75/159 (47.17%), Postives = 105/159 (66.04%), Query Frame = 1
Query:   46 LLFFGIMAAAAVYDLISYTIPNFLSLLLIGGFAVLALMLALPWQLVLSHAGAGLAMLAIGWGMFAIGLLGGGDAKLFAATSLWMGWGGIINYLIIFSICGGLLALCLILFRRIALPAGLAEMTWIATLHDKKQGVPYGIALAA-GAMLAPPALLAAAGM 519
            L+F   MA A   D+++ TIPN +S++L+  FAV A M+ + W  + SH GAGL ML IG GMFA+G LGGGDAKL AAT+LW+G+  ++ YL++ ++ GG L+L ++ +RR+  P  L    W   LH  K G+PYG+ALAA G  + P  L  AAG+
Sbjct:    8 LIFPAAMAFAGAMDMLTMTIPNRISIVLVAAFAVAAAMMGIGWWALASHVGAGLLMLMIGIGMFALGWLGGGDAKLLAATALWLGFDHLLPYLLLAAMAGGALSLAILFYRRLMPPLWLTRQAWAMRLHHAKTGIPYGVALAAAGLHVFPSTLWFAAGI 166          
BLAST of mRNA_P-wetherbeei_contig13278.2.1 vs. uniprot
Match: UPI00131A8B61 (prepilin peptidase n=1 Tax=Bradyrhizobium sp. S69 TaxID=1641856 RepID=UPI00131A8B61)

HSP 1 Score: 133 bits (335), Expect = 1.660e-36
Identity = 74/150 (49.33%), Postives = 101/150 (67.33%), Query Frame = 1
Query:   46 LLFFGIMAAAAVYDLISYTIPNFLSLLLIGGFAVLALMLALPWQLVLSHAGAGLAMLAIGWGMFAIGLLGGGDAKLFAATSLWMGWGGIINYLIIFSICGGLLALCLILFRRIALPAGLAEMTWIATLHDKKQGVPYGIALAAGAMLAPP 495
            LLF  +MA AA  DL++ TI N +SL L  GF +LAL+  + +  +LSH GAG  +L + +  FA+G +GGGDAKL AAT+LW G+G ++NYL+  S+ GG+L L L+ FR+  LP  L   TW+  LH K  G+PYGIALA GA++  P
Sbjct:    9 LLFPALMAFAAASDLLTMTISNRVSLALAAGFLILALLSGMGFYDILSHLGAGFGVLTVAFACFAMGWIGGGDAKLAAATALWFGFGHLMNYLVYASLLGGVLTLLLLQFRQWPLPYALCRQTWLLRLHAKDSGIPYGIALAIGALMIYP 158          
BLAST of mRNA_P-wetherbeei_contig13278.2.1 vs. uniprot
Match: UPI001F028C76 (prepilin peptidase n=1 Tax=Methylobacterium sp. SyP6R TaxID=2718876 RepID=UPI001F028C76)

HSP 1 Score: 133 bits (334), Expect = 1.970e-36
Identity = 70/145 (48.28%), Postives = 104/145 (71.72%), Query Frame = 1
Query:   61 IMAAAAVYDLISYTIPNFLSLLLIGGFAVLALMLALPWQLVLSHAGAGLAMLAIGWGMFAIGLLGGGDAKLFAATSLWMGWGGIINYLIIFSICGGLLALCLILFRRIALPAGLAEMTWIATLHDKKQGVPYGIALAAGAMLAPP 495
            +MA AA+ D+++ TIPN +S  L+G F +LA+   L W L+ +HAGAGL +LAIG+G+F+ G++GGGDAKL AAT+LW+G G +++Y++  S+ GG+LAL ++  RR  LP   A   +   LHD+  G+PYG+ALAA A++  P
Sbjct:   13 LMAYAAMSDILTMTIPNRVSAALVGAFTLLAVATGLDWALIAAHAGAGLLVLAIGFGLFSAGVIGGGDAKLAAATALWLGSGPLLDYVVNASMLGGVLALAILAMRRHPLPGFAAAWPFAVHLHDRSVGMPYGVALAASALVTCP 157          
BLAST of mRNA_P-wetherbeei_contig13278.2.1 vs. uniprot
Match: A0A7C5IVI1_9HYPH (Peptidase n=1 Tax=Devosia sp. TaxID=1871048 RepID=A0A7C5IVI1_9HYPH)

HSP 1 Score: 132 bits (333), Expect = 2.640e-36
Identity = 77/149 (51.68%), Postives = 102/149 (68.46%), Query Frame = 1
Query:   43 ALLFFGI-MAAAAVYDLISYTIPNFLSLLLIGGFAVLALMLALPWQLVLSHAGAGLAMLAIGWGMFAIGLLGGGDAKLFAATSLWMGWGGIINYLIIFSICGGLLALCLILFRRIALPAGLAEMTWIATLHDKKQGVPYGIALAAGAML 486
            ALL+F + MA AA  DL++  I N L L L+ GF VLAL++ LP Q  + H  AGL +LA+ +  FA G +GGGDAKL AATSLW+G+G  + YL+  ++ GG L L L+L RR  LP  LA++ W+  LHDKK G+PYGIALAA  ++
Sbjct:    5 ALLYFPLFMALAATSDLLTMKISNRLVLALVAGFLVLALVINLPLQQFMMHIAAGLVVLAVAFSFFAFGWVGGGDAKLAAATSLWLGFGMTLPYLVYAALMGGALTLGLLLLRRYPLPGMLAKVAWVDRLHDKKTGIPYGIALAAAGLV 153          
BLAST of mRNA_P-wetherbeei_contig13278.2.1 vs. uniprot
Match: A0A109J9D8_9BRAD (Peptidase n=1 Tax=Bradyrhizobium macuxiense TaxID=1755647 RepID=A0A109J9D8_9BRAD)

HSP 1 Score: 132 bits (333), Expect = 3.420e-36
Identity = 74/150 (49.33%), Postives = 103/150 (68.67%), Query Frame = 1
Query:   46 LLFFGIMAAAAVYDLISYTIPNFLSLLLIGGFAVLALMLALPWQLVLSHAGAGLAMLAIGWGMFAIGLLGGGDAKLFAATSLWMGWGGIINYLIIFSICGGLLALCLILFRRIALPAGLAEMTWIATLHDKKQGVPYGIALAAGAMLAPP 495
            +LF  +MA AA  DL++ TIPN +SL L+ GFAVLA ++ +    +L+H GAG  +L + +GMFA+G +GGGDAK+ AA  LW G+  ++ YL++ S+ GG L + L+ FR   LP  LA   W+A LHDK+ G+PYGIALA GA+L  P
Sbjct:    9 MLFPALMAFAAASDLLTMTIPNRVSLALLAGFAVLAPLIGMGPYDILNHIGAGALVLVVAFGMFAMGWVGGGDAKVAAAIGLWFGFEHLLEYLVLASLFGGALTVLLLQFRLWPLPYPLASQAWLARLHDKQTGIPYGIALALGALLVYP 158          
BLAST of mRNA_P-wetherbeei_contig13278.2.1 vs. uniprot
Match: UPI00141DC873 (prepilin peptidase n=1 Tax=Rhizomicrobium electricum TaxID=480070 RepID=UPI00141DC873)

HSP 1 Score: 132 bits (332), Expect = 3.960e-36
Identity = 68/145 (46.90%), Postives = 100/145 (68.97%), Query Frame = 1
Query:   61 IMAAAAVYDLISYTIPNFLSLLLIGGFAVLALMLALPWQLVLSHAGAGLAMLAIGWGMFAIGLLGGGDAKLFAATSLWMGWGGIINYLIIFSICGGLLALCLILFRRIALPAGLAEMTWIATLHDKKQGVPYGIALAAGAMLAPP 495
            ++A AA +DL SYTIPN LS+ +   F + AL++ LP     +H  AGL  L  G+ +FA+  +GGGDAKLFAAT+LW G+G +++Y+++ ++ GG L + L+  RR+ LP+ L    WIA LHD + G+PYG+ALAAGA++  P
Sbjct:   13 LLALAAGWDLASYTIPNLLSVGIAAAFVIFALLVGLPLAAWGAHFAAGLVALVAGFSLFALRWIGGGDAKLFAATALWFGFGDLMSYVLVAALIGGGLTIALLALRRVPLPSVLMRQAWIARLHDHRSGIPYGVALAAGALVVLP 157          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13278.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TTU2_9PROT2.280e-6367.08Peptidase n=1 Tax=Alphaproteobacteria bacterium Ta... [more]
A0A2E5BRI8_9HYPH2.590e-4052.00Peptidase n=1 Tax=Rhodobiaceae bacterium TaxID=202... [more]
A0A0D7EWG4_RHOPL6.360e-3952.00Peptidase n=1 Tax=Rhodopseudomonas palustris TaxID... [more]
A0A355T2K0_9HYPH1.780e-3748.32Peptidase_A24 domain-containing protein n=2 Tax=Rh... [more]
UPI001FCCC6E64.630e-3747.17prepilin peptidase n=1 Tax=Hyphomicrobium sp. CS1B... [more]
UPI00131A8B611.660e-3649.33prepilin peptidase n=1 Tax=Bradyrhizobium sp. S69 ... [more]
UPI001F028C761.970e-3648.28prepilin peptidase n=1 Tax=Methylobacterium sp. Sy... [more]
A0A7C5IVI1_9HYPH2.640e-3651.68Peptidase n=1 Tax=Devosia sp. TaxID=1871048 RepID=... [more]
A0A109J9D8_9BRAD3.420e-3649.33Peptidase n=1 Tax=Bradyrhizobium macuxiense TaxID=... [more]
UPI00141DC8733.960e-3646.90prepilin peptidase n=1 Tax=Rhizomicrobium electric... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13278contigP-wetherbeei_contig13278:1297..1818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1282876.BAOK01000001_gene3384
Preferred namecpaA
PFAMsPeptidase_A24
Model size522
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02278
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.92e-38
EggNOG OGsCOG4960@1|root,COG4960@2|Bacteria,1RAYG@1224|Proteobacteria,2TSVX@28211|Alphaproteobacteria,4BR29@82117|unclassified Alphaproteobacteria
EC3.4.23.43
DescriptionType IV leader peptidase family
Cds size522
COG categoryOU
BRITEko00000,ko01000,ko02035,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185979.8138237-CDS-P-wetherbeei_contig13278:1296..18181683185979.8138237-CDS-P-wetherbeei_contig13278:1296..1818Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13278 1297..1818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13278.2.1prot_P-wetherbeei_contig13278.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13278 1297..1818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13278.2.1

>prot_P-wetherbeei_contig13278.2.1 ID=prot_P-wetherbeei_contig13278.2.1|Name=mRNA_P-wetherbeei_contig13278.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
MAETVSASPALILFALLFFGIMAAAAVYDLISYTIPNFLSLLLIGGFAVL
ALMLALPWQLVLSHAGAGLAMLAIGWGMFAIGLLGGGDAKLFAATSLWMG
WGGIINYLIIFSICGGLLALCLILFRRIALPAGLAEMTWIATLHDKKQGV
PYGIALAAGAMLAPPALLAAAGM*
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mRNA from alignment at P-wetherbeei_contig13278:1297..1818-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13278.2.1 ID=mRNA_P-wetherbeei_contig13278.2.1|Name=mRNA_P-wetherbeei_contig13278.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig13278:1297..1818- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGAAACAGTCTCTGCCTCACCCGCACTCATTTTATTCGCTTTGTT GTTTTTTGGCATCATGGCGGCGGCGGCGGTTTATGACCTGATCAGCTATA CGATCCCGAATTTTTTATCCCTGCTGTTGATTGGCGGCTTTGCCGTATTG GCGCTGATGCTGGCGCTACCCTGGCAACTGGTTCTGTCCCATGCAGGGGC CGGTCTTGCCATGCTGGCAATCGGCTGGGGTATGTTTGCGATAGGCCTAT TGGGGGGCGGGGATGCCAAACTTTTTGCCGCAACCAGCCTGTGGATGGGC TGGGGTGGGATTATTAATTATTTGATAATATTCAGTATTTGTGGCGGCCT GCTGGCTTTGTGCCTGATATTGTTCCGCCGTATTGCCCTGCCGGCGGGAC TTGCCGAGATGACGTGGATTGCAACGCTGCACGATAAGAAACAGGGCGTG CCTTATGGCATTGCCCTTGCTGCCGGGGCGATGCTGGCACCGCCTGCGCT TCTGGCTGCGGCCGGGATGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13278:1297..1818-

>mRNA_P-wetherbeei_contig13278.2.1 ID=mRNA_P-wetherbeei_contig13278.2.1|Name=mRNA_P-wetherbeei_contig13278.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig13278:1297..1818- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGAAACAGTCTCTGCCTCACCCGCACTCATTTTATTCGCTTTGTT
GTTTTTTGGCATCATGGCGGCGGCGGCGGTTTATGACCTGATCAGCTATA
CGATCCCGAATTTTTTATCCCTGCTGTTGATTGGCGGCTTTGCCGTATTG
GCGCTGATGCTGGCGCTACCCTGGCAACTGGTTCTGTCCCATGCAGGGGC
CGGTCTTGCCATGCTGGCAATCGGCTGGGGTATGTTTGCGATAGGCCTAT
TGGGGGGCGGGGATGCCAAACTTTTTGCCGCAACCAGCCTGTGGATGGGC
TGGGGTGGGATTATTAATTATTTGATAATATTCAGTATTTGTGGCGGCCT
GCTGGCTTTGTGCCTGATATTGTTCCGCCGTATTGCCCTGCCGGCGGGAC
TTGCCGAGATGACGTGGATTGCAACGCTGCACGATAAGAAACAGGGCGTG
CCTTATGGCATTGCCCTTGCTGCCGGGGCGATGCTGGCACCGCCTGCGCT
TCTGGCTGCGGCCGGGATGTAG
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