mRNA_P-wetherbeei_contig1323.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1323.1.1
Unique NamemRNA_P-wetherbeei_contig1323.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1323.1.1 vs. uniprot
Match: D7FTD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD3_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.130e-22
Identity = 65/166 (39.16%), Postives = 96/166 (57.83%), Query Frame = 3 
Query:  171 RFTRCAWRALRRECRIRFACDPRDGQAAFLMGRLETRRGHHAEAAGWFERAARVRDDEKSWHAVGRSEYKAWEANPVSSHERLRNAAEAYSHALSRTPPDSLRGLWNLPRTLYELGRVYESYGAFEGALAVYQHIATALPFYPEFAAVAFRAAVVMRHLASVAAAP 668
            RF +   + +R+  + R    P D +    +G LE   G    A      AA+  DD+ +W  + R+E +AWE +P + HERLR A +AY  ++    P  ++ +W LP  L ELG VYES+G+FEGAL +YQ IA+++P    F  V FR AVVMR++A++  AP
Sbjct:  118 RFQKAGRKIVRQGLQHRLQATPDDRKLLGRLGSLEVADGDLENAIEHLRLAAKGSDDDVAWTTLARAEVRAWEQDPATGHERLRWACDAYRRSVDLLEPGFVQ-VWELPARLLELGGVYESFGSFEGALHIYQRIASSMPLSSGFEGVLFRCAVVMRYMATLERAP 282
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BLAST of mRNA_P-wetherbeei_contig1323.1.1 vs. uniprot
Match: A0A6H5K7H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7H6_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.620e-19
Identity = 58/136 (42.65%), Postives = 84/136 (61.76%), Query Frame = 3 
Query:  261 MGRLETRRGHHAEAAGWFERAARVRDDEKSWHAVGRSEYKAWEANPVSSHERLRNAAEAYSHALSRTPPDSLRGLWNLPRTLYELGRVYESYGAFEGALAVYQHIATALPFYPEFAAVAFRAAVVMRHLASVAAAP 668
            +G LE   G    A      AA+  DD+ +W  + R+E +AW+ +P + HERLR A +AY  ++    P  ++ +W LP  L ELG VYES+G+FEGAL +YQ IA+++P    F  V FR AVVMR++A++A  P
Sbjct:  124 LGSLEVADGDLENAVEHLRLAAKGSDDDVAWTTLARAEVRAWQQDPATGHERLRWACDAYRRSVDLLEPGFVQ-VWELPARLLELGGVYESFGSFEGALHIYQRIASSMPLSSGFEDVLFRCAVVMRYMATLAFLP 258
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1323.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTD3_ECTSI1.130e-2239.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7H6_9PHAE1.620e-1942.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1323contigP-wetherbeei_contig1323:824..4051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1925
Hectar predicted targeting categorymitochondrion
Exons6
Cds size1881
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1323.1.1prot_P-wetherbeei_contig1323.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1323 824..4007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185978.4506764-CDS-P-wetherbeei_contig1323:823..9671683185978.4506764-CDS-P-wetherbeei_contig1323:823..967Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1323 824..967 -
1683185978.461402-CDS-P-wetherbeei_contig1323:1289..14181683185978.461402-CDS-P-wetherbeei_contig1323:1289..1418Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1323 1290..1418 -
1683185978.47044-CDS-P-wetherbeei_contig1323:1696..18581683185978.47044-CDS-P-wetherbeei_contig1323:1696..1858Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1323 1697..1858 -
1683185978.4789855-CDS-P-wetherbeei_contig1323:2049..26431683185978.4789855-CDS-P-wetherbeei_contig1323:2049..2643Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1323 2050..2643 -
1683185978.4876-CDS-P-wetherbeei_contig1323:2805..33121683185978.4876-CDS-P-wetherbeei_contig1323:2805..3312Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1323 2806..3312 -
1683185978.4968083-CDS-P-wetherbeei_contig1323:3662..40071683185978.4968083-CDS-P-wetherbeei_contig1323:3662..4007Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1323 3663..4007 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185978.5083296-UTR-P-wetherbeei_contig1323:4007..40511683185978.5083296-UTR-P-wetherbeei_contig1323:4007..4051Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1323 4008..4051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1323.1.1

>prot_P-wetherbeei_contig1323.1.1 ID=prot_P-wetherbeei_contig1323.1.1|Name=mRNA_P-wetherbeei_contig1323.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=627bp
MHRTTVAPRCSQVVRRKTAAKARIAGQKNNAQDGAEKQDFRDRFTRCAWR
ALRRECRIRFACDPRDGQAAFLMGRLETRRGHHAEAAGWFERAARVRDDE
KSWHAVGRSEYKAWEANPVSSHERLRNAAEAYSHALSRTPPDSLRGLWNL
PRTLYELGRVYESYGAFEGALAVYQHIATALPFYPEFAAVAFRAAVVMRH
LASVAAAPAVTTAAPAVTTAEAAHAGVAAAAAATASNDAKTAGAAGPTEA
VAGEAVKQPAAAPPAATARPDVAAALTLTAVQYLDLSIQETARRRRAADP
MVVFLYAELCGALGTVAGARRAAVAYAQAFAATNRGKYWLRGGGSGIDGE
DGGDGGDKGSAEGNTSGGVKSTSGSGGGGSDDDSGRGGSDGGAGARASDG
SGRGSVPTSVTEVENGGAAHGGNGSNLKKSTESKAEWVANGGDKNSGGAN
GASAGGDGGETGVSEPAGHTTWQEWVVDPKTHHAVAKEWTHRREPALAAA
AFERSRGLAAAAGRTLADVMTYDDLVVAAEAFASFQGFGKATEVAAMALQ
QRPYEGPARKLAAVVGGVGRREEQRRQEEVAQYLQWRWRTRPWAGPWYRR
YLAEAVGSWEAKLRRDHWDGEARRHLA
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mRNA from alignment at P-wetherbeei_contig1323:824..4051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1323.1.1 ID=mRNA_P-wetherbeei_contig1323.1.1|Name=mRNA_P-wetherbeei_contig1323.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3228bp|location=Sequence derived from alignment at P-wetherbeei_contig1323:824..4051- (Phaeothamnion wetherbeei SAG_119_79)
CCCACGTGGAGAAATCCTGCGAGGACGAGTTGCCTGAATGATTCATGCAT
CGGACGACGGTGGCGCCCCGATGCTCCCAGGTAGTTAGGAGAAAGACGGC
GGCGAAGGCGAGGATTGCGGGACAGAAGAACAACGCGCAGGATGGCGCCG
AGAAGCAAGATTTTCGAGACCGCTTCACGCGGTGTGCATGGCGTGCGCTG
CGGCGAGAATGCCGCATCCGCTTCGCCTGCGACCCGAGGGACGGGCAGGC
CGCCTTCCTTATGGGGAGGCTCGAGACACGGCGAGGCCACCACGCTGAAG
CGGCAGGGTGGTTCGAGAGAGCCGCACGCGTCAGAGATGATGAAAAGTCG
TGGCATGCAGTCGGTCGGTCAGAGTACAAGGCGTGGGAGGTGAGGAGCAA
GAGAAGGACTTGCTAGTCATGCATTTTCGAAAGGTGCGAATCCTGATATC
CTGATCTTGTCATACCGGAATGAGCATTTTGTCCTCTGATGTCGATGTTG
ATGACGCGCGACTCCTCATTCATCGTCTTGCAACACCGCCATTTGCTCTG
CCTCGCATGCCGAGCAGTTTTCCCGATGGCGGCCACCCTCTTCTCCTCCT
TGTAATCTTGACCACTGCATCGGGTCTATTTTTTGAATTTTCTCATGCCA
CAGTCGCCTCCCTCACTTCCGCATCACCCCCCATGCCTATTTCAACCAAA
GCTAATTCACGCTGAACCAAATTGCATCCAAACCGGCAGGCAAATCCGGT
CTCTTCCCACGAGCGCCTCCGCAACGCCGCCGAGGCCTACTCGCACGCCC
TGTCTCGGACGCCGCCGGACTCTCTCCGGGGGCTTTGGAACCTTCCCAGA
ACTCTCTACGAACTCGGAAGGGTCTACGAATCTTATGGCGCATTTGAGGG
CGCCCTAGCGGTCTACCAGCACATCGCCACGGCGCTGCCTTTCTATCCGG
AATTTGCGGCAGTAGCGTTCCGGGCGGCGGTGGTTATGCGCCACCTGGCT
TCCGTCGCAGCGGCGCCGGCAGTGACGACAGCAGCACCGGCGGTCACGAC
GGCGGAGGCTGCACACGCTGGGGTGGCGGCCGCGGCGGCGGCGACGGCTT
CAAACGATGCAAAGACGGCGGGAGCGGCGGGTCCGACGGAAGCTGTGGCA
GGCGAGGCGGTGAAGCAGCCGGCGGCGGCACCACCAGCAGCCACTGCGAG
GCCGGATGTCGCGGCGGCACTGACGCTGACGGCGGTGCAATATCTGGTGA
GCAACTGGGGGACGGGTTTTGGGGATTTCAACCCGCAACTTCAAGAACCT
GGGGAACGACTTTTGGGGGGAAGGCTCTGCCGCTGCGACGAGTCTACCAT
CTATCTTATAAAGATTTGCGGTACGTCTGCTATGCTATGGTATTTCTCCC
TTATGCAGGACCTTAGCATTCAGGAGACAGCGCGACGGCGGCGGGCCGCC
GACCCGATGGTCGTCTTCCTTTACGCGGAGCTGTGCGGCGCCCTTGGCAC
CGTCGCCGGGGCACGGCGTGCGGCTGTCGCCTACGCGCAGGCGTTTGCTG
CCACCAACCGTGGAAAGTATTGGTTGCGTGGTGGCGGCAGTGGCATCGAT
GGCGAGGACGGCGGTGATGGCGGTGACAAGGGCAGCGCCGAAGGTAACAC
CAGCGGCGGGGTTAAAAGCACCTCCGGCAGCGGCGGCGGCGGCAGCGACG
ACGATAGCGGTAGAGGCGGTTCCGATGGCGGCGCCGGTGCCCGCGCCAGC
GATGGCAGTGGCCGTGGTAGTGTGCCAACGAGCGTAACGGAGGTCGAAAA
TGGTGGCGCTGCACATGGAGGCAACGGTAGCAATCTCAAGAAATCCACGG
AATCGAAAGCAGAGTGGGTGGCCAATGGCGGCGACAAAAACAGCGGCGGC
GCTAATGGCGCTTCAGCCGGTGGCGACGGCGGTGAGACTGGCGTGTCGGA
ACCTGCCGGCCACACGACTTGGCAAGAATGGGTTGTTGATCCGAAGACAC
ATGTGAGTCAAAAGAGACTTTTGCAGAATTTTGGCCTCTTGTCGCACTTC
GTGGCTCACTGTTGGCCTGCTCCGATGCGGCAGTAAGGTGACTTATCGCT
GCTTACCATGATTCGCATCCGCTGTCCCTTCACTGCTGCCGGGTCCGCTG
TCGCTGCCACTGGTCCCCTCCCTCTCGTACGCCGGTACATCAGCACGCCG
TCGCGAAGGAGTGGACGCACCGCCGTGAGCCGGCGCTGGCGGCCGCCGCC
TTTGAGCGGAGCCGTGGGCTTGCCGCCGCTGCCGGCAGGACGCTAGCCGA
CGTCATGACCTATGACGATTTGGTCGTCGCCGCCGAGGCGTTCGCGTCCT
TTCAGGTTAAAAAAGGAATCGGGTCAAAAATTGCAACATAAGTAAATGTT
TGCAAGGCTCCTGGGAAGGGCGAAGACGGGGTGGCTGGCTGTGACCGTGA
GACCCATCTCAGAACGATAACGTTGCTGCTTTCGGTTCACCTGCACTGCG
TGGGTTAAGGGAGGTGTACTTGATTCGTGTTTTGCAGACACGGCTGTGCT
CGGATTGCCGCCACCTTTCCGACGCATCTGCAGAACCATTACCGCCGCGA
TAACCGCCCCTCCTCGCTCCCCTTTCCGCTCAGGGCTTCGGCAAGGCGAC
GGAGGTGGCAGCGATGGCGCTGCAGCAGCGGCCGTACGAAGGACCCGCGC
GGAAGCTGGCGGCGGTCGTCGGCGGCGTGGGCCGGCGGGAGGAGCAGCGC
CGCCAGGAGGAGGTAGGGGAAAAAGGGAAGGAGAGCGACGGCGGTCCGCC
ATTCAACTGCCGGCATGCCTCCTTTTTGCTTTTTGTTTGTTTCTAATCTT
TGTTTTCTGATTGGATGTGAAGGGACGTGCAGAGTCAAGCTGTCGGACGA
ATGAAGGAACAGGCGTTCTTGCCACCGCGGCGCTGCGACAACCACCTTCA
CTGCGTTTACCTGCTTTACTTTCCCGCTGCCATCGCCGCCTCTGGTTTTG
GCATGGCAACTATTTCTCCCGCACACTTCTCCGTAGCGCAACACACTTGC
CATTCACGAAAACTCCTTCGCAGCCGAAGCGCAGGTGGCGCAGTACCTGC
AGTGGCGCTGGCGCACTCGCCCGTGGGCGGGCCCGTGGTACCGCCGCTAC
CTGGCCGAGGCCGTTGGCAGCTGGGAGGCGAAGCTGCGGCGCGACCACTG
GGACGGCGAGGCGCGGCGGCACCTGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1323:824..4051-

>mRNA_P-wetherbeei_contig1323.1.1 ID=mRNA_P-wetherbeei_contig1323.1.1|Name=mRNA_P-wetherbeei_contig1323.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1881bp|location=Sequence derived from alignment at P-wetherbeei_contig1323:824..4051- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATCGGACGACGGTGGCGCCCCGATGCTCCCAGGTAGTTAGGAGAAA
GACGGCGGCGAAGGCGAGGATTGCGGGACAGAAGAACAACGCGCAGGATG
GCGCCGAGAAGCAAGATTTTCGAGACCGCTTCACGCGGTGTGCATGGCGT
GCGCTGCGGCGAGAATGCCGCATCCGCTTCGCCTGCGACCCGAGGGACGG
GCAGGCCGCCTTCCTTATGGGGAGGCTCGAGACACGGCGAGGCCACCACG
CTGAAGCGGCAGGGTGGTTCGAGAGAGCCGCACGCGTCAGAGATGATGAA
AAGTCGTGGCATGCAGTCGGTCGGTCAGAGTACAAGGCGTGGGAGGCAAA
TCCGGTCTCTTCCCACGAGCGCCTCCGCAACGCCGCCGAGGCCTACTCGC
ACGCCCTGTCTCGGACGCCGCCGGACTCTCTCCGGGGGCTTTGGAACCTT
CCCAGAACTCTCTACGAACTCGGAAGGGTCTACGAATCTTATGGCGCATT
TGAGGGCGCCCTAGCGGTCTACCAGCACATCGCCACGGCGCTGCCTTTCT
ATCCGGAATTTGCGGCAGTAGCGTTCCGGGCGGCGGTGGTTATGCGCCAC
CTGGCTTCCGTCGCAGCGGCGCCGGCAGTGACGACAGCAGCACCGGCGGT
CACGACGGCGGAGGCTGCACACGCTGGGGTGGCGGCCGCGGCGGCGGCGA
CGGCTTCAAACGATGCAAAGACGGCGGGAGCGGCGGGTCCGACGGAAGCT
GTGGCAGGCGAGGCGGTGAAGCAGCCGGCGGCGGCACCACCAGCAGCCAC
TGCGAGGCCGGATGTCGCGGCGGCACTGACGCTGACGGCGGTGCAATATC
TGGACCTTAGCATTCAGGAGACAGCGCGACGGCGGCGGGCCGCCGACCCG
ATGGTCGTCTTCCTTTACGCGGAGCTGTGCGGCGCCCTTGGCACCGTCGC
CGGGGCACGGCGTGCGGCTGTCGCCTACGCGCAGGCGTTTGCTGCCACCA
ACCGTGGAAAGTATTGGTTGCGTGGTGGCGGCAGTGGCATCGATGGCGAG
GACGGCGGTGATGGCGGTGACAAGGGCAGCGCCGAAGGTAACACCAGCGG
CGGGGTTAAAAGCACCTCCGGCAGCGGCGGCGGCGGCAGCGACGACGATA
GCGGTAGAGGCGGTTCCGATGGCGGCGCCGGTGCCCGCGCCAGCGATGGC
AGTGGCCGTGGTAGTGTGCCAACGAGCGTAACGGAGGTCGAAAATGGTGG
CGCTGCACATGGAGGCAACGGTAGCAATCTCAAGAAATCCACGGAATCGA
AAGCAGAGTGGGTGGCCAATGGCGGCGACAAAAACAGCGGCGGCGCTAAT
GGCGCTTCAGCCGGTGGCGACGGCGGTGAGACTGGCGTGTCGGAACCTGC
CGGCCACACGACTTGGCAAGAATGGGTTGTTGATCCGAAGACACATCACG
CCGTCGCGAAGGAGTGGACGCACCGCCGTGAGCCGGCGCTGGCGGCCGCC
GCCTTTGAGCGGAGCCGTGGGCTTGCCGCCGCTGCCGGCAGGACGCTAGC
CGACGTCATGACCTATGACGATTTGGTCGTCGCCGCCGAGGCGTTCGCGT
CCTTTCAGGGCTTCGGCAAGGCGACGGAGGTGGCAGCGATGGCGCTGCAG
CAGCGGCCGTACGAAGGACCCGCGCGGAAGCTGGCGGCGGTCGTCGGCGG
CGTGGGCCGGCGGGAGGAGCAGCGCCGCCAGGAGGAGGTGGCGCAGTACC
TGCAGTGGCGCTGGCGCACTCGCCCGTGGGCGGGCCCGTGGTACCGCCGC
TACCTGGCCGAGGCCGTTGGCAGCTGGGAGGCGAAGCTGCGGCGCGACCA
CTGGGACGGCGAGGCGCGGCGGCACCTGGCC
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