mRNA_P-wetherbeei_contig13134.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13134.1.1
Unique NamemRNA_P-wetherbeei_contig13134.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13134.1.1 vs. uniprot
Match: A0A2D4C2E2_PYTIN (SCD domain-containing protein (Fragment) n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2E2_PYTIN)

HSP 1 Score: 112 bits (279), Expect = 2.440e-25
Identity = 50/110 (45.45%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  130 IAAIFNGVWVHRYRDPCEPVRVECIRALGEWMLALPDTFVVNGYLKYMGWLLSDKGAAVRLRVLQSLQLIYDQQDMLMRIEEFTGRFRPAVVRMVFDVDGAASEAALRLL 459
            I  +FNGV VHRYRD    +R+E IR LG W++ALPD F+ + Y+KY+GW+L+DK A+VRL V++ L+ +Y+ ++  +++E FT RF P  + +  DVD +  +A ++LL
Sbjct:  345 IQLLFNGVVVHRYRDVMADIRLESIRTLGNWIMALPDQFLKDNYMKYLGWVLNDKDASVRLGVVEILRELYENEEFAVKLELFTSRFLPRYLELCNDVDESVVQACIKLL 454          
BLAST of mRNA_P-wetherbeei_contig13134.1.1 vs. uniprot
Match: A0A4W4HJ05_ELEEL (Stromal antigen 3 n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4HJ05_ELEEL)

HSP 1 Score: 102 bits (254), Expect = 1.560e-24
Identity = 47/107 (43.93%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  139 IFNGVWVHRYRDPCEPVRVECIRALGEWMLALPDTFVVNGYLKYMGWLLSDKGAAVRLRVLQSLQLIYDQQDMLMRIEEFTGRFRPAVVRMVFDVDGAASEAALRLL 459
            IF GV+VHRYRD    +RV C++ +G W+   P +F+ +G+LKYMGW+L+DK A+VRL+ + +LQ +Y ++  + R+E FT RF+  ++ MV D D   +  A++LL
Sbjct:    4 IFKGVFVHRYRDRVPEIRVICMKEMGVWLRENPTSFLNDGHLKYMGWMLNDKQASVRLQCVLALQKLYAERSFISRLELFTSRFKERMLNMVMDKDPDVAVEAVKLL 110          
BLAST of mRNA_P-wetherbeei_contig13134.1.1 vs. uniprot
Match: A0A5N5MG58_PANHP (SCD domain-containing protein n=3 Tax=Pangasianodon hypophthalmus TaxID=310915 RepID=A0A5N5MG58_PANHP)

HSP 1 Score: 105 bits (262), Expect = 4.570e-23
Identity = 52/121 (42.98%), Postives = 79/121 (65.29%), Query Frame = 1
Query:  139 IFNGVWVHRYRDPCEPVRVECIRALGEWMLALPDTFVVNGYLKYMGWLLSDKGAAVRLRVLQSLQLIYDQQDMLMRIEEFTGRFRPAVVRMVFDVDGAASEAALRLL---RRAWEGGLLDD 492
            IF GV+VHRYRD    +R  C+  LG W+   P +F+ +G+LKY+GW+L DK A+VRLR + SLQ +Y+++  + R+E FT RF+  ++ MV D D   +  A+RLL   ++  E GL ++
Sbjct:  303 IFKGVFVHRYRDKVSEIRAVCMEELGVWLRENPASFLNDGHLKYLGWMLHDKQASVRLRCVLSLQKLYEEKSFIGRLELFTSRFKERLLNMVLDKDPDVAVEAVRLLLIIKQKTEDGLSEE 423          
BLAST of mRNA_P-wetherbeei_contig13134.1.1 vs. uniprot
Match: A0A8C6YYH8_NOTPE (Cohesin subunit SA-2-like n=1 Tax=Nothoprocta perdicaria TaxID=30464 RepID=A0A8C6YYH8_NOTPE)

HSP 1 Score: 105 bits (261), Expect = 5.920e-23
Identity = 51/126 (40.48%), Postives = 78/126 (61.90%), Query Frame = 1
Query:   82 LQQRRHAEAASTLEEGIAAIFNGVWVHRYRDPCEPVRVECIRALGEWMLALPDTFVVNGYLKYMGWLLSDKGAAVRLRVLQSLQLIYDQQDMLMRIEEFTGRFRPAVVRMVFDVDGAASEAALRLL 459
            LQ+RR  +    ++  + AIF G +++RYRD    +R  CI  +G WM   PD F+ + YLKY+GW+L DK A VRL+ L  LQ IY +++++ R++ FT RF+  +V M  D D   +  A++LL
Sbjct:   44 LQRRRKEQKLLDIQNMMNAIFKGTFLNRYRDVIPEIRATCIEEIGSWMNTYPDAFLNDSYLKYVGWMLYDKQAEVRLKCLLGLQGIYSRKELVSRMDLFTSRFKDRIVSMPLDKDHEVAVQAMKLL 169          
BLAST of mRNA_P-wetherbeei_contig13134.1.1 vs. uniprot
Match: A0A8C6YTE9_NOTPE (Cohesin subunit SA-2-like n=3 Tax=Nothoprocta perdicaria TaxID=30464 RepID=A0A8C6YTE9_NOTPE)

HSP 1 Score: 105 bits (261), Expect = 6.180e-23
Identity = 51/126 (40.48%), Postives = 78/126 (61.90%), Query Frame = 1
Query:   82 LQQRRHAEAASTLEEGIAAIFNGVWVHRYRDPCEPVRVECIRALGEWMLALPDTFVVNGYLKYMGWLLSDKGAAVRLRVLQSLQLIYDQQDMLMRIEEFTGRFRPAVVRMVFDVDGAASEAALRLL 459
            LQ+RR  +    ++  + AIF G +++RYRD    +R  CI  +G WM   PD F+ + YLKY+GW+L DK A VRL+ L  LQ IY +++++ R++ FT RF+  +V M  D D   +  A++LL
Sbjct:  233 LQRRRKEQKLLDIQNMMNAIFKGTFLNRYRDVIPEIRATCIEEIGSWMNTYPDAFLNDSYLKYVGWMLYDKQAEVRLKCLLGLQGIYSRKELVSRMDLFTSRFKDRIVSMPLDKDHEVAVQAMKLL 358          
BLAST of mRNA_P-wetherbeei_contig13134.1.1 vs. uniprot
Match: A0A7L2SB96_9PASS (STAG2 protein (Fragment) n=1 Tax=Mystacornis crossleyi TaxID=98133 RepID=A0A7L2SB96_9PASS)

HSP 1 Score: 98.6 bits (244), Expect = 6.920e-23
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  136 AIFNGVWVHRYRDPCEPVRVECIRALGEWMLALPDTFVVNGYLKYMGWLLSDKGAAVRLRVLQSLQLIYDQQDMLMRIEEFTGRFRPAVVRMVFDVDGAASEAALRLL 459
            AIF G +++RYRD    +R  CI  +G W+   PD F+ + YLKY+GW+L DK A VRL+ L  LQ IY ++++  R++ FT RF+  +V M  D D   +  A++LL
Sbjct:   15 AIFKGTFLNRYRDVIPEIRATCIEEIGSWIKTYPDAFLNDSYLKYVGWMLFDKQAEVRLKCLLGLQGIYSRKELASRMDLFTNRFKDRIVSMPLDKDHEVAVQAMKLL 122          
BLAST of mRNA_P-wetherbeei_contig13134.1.1 vs. uniprot
Match: A0A7S0RG96_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RG96_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 1.130e-22
Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = 1
Query:  112 STLEEGIAAIFNGVWVHRYRDPCEPVRVECIRALGEWMLALPDTFVVNGYLKYMGWLLSDKGAAVRLRVLQSLQLIYDQQDMLMRIEEFTGRFRPAVVRMVFDVDGAASEAALRLLRRAWEGGLLD 489
            ++LE  +  +FNGV+VHRYRD  E VR ECI A+G W    P  F+ + YLKY+GW L+DK ++VR   L +LQ++YD++D    ++ FT RF   V +MV D+D   +  +L  L +     L+D
Sbjct:  213 NSLEALMKQVFNGVFVHRYRDIDEHVRGECIAAVGRWCHTYPSYFLKDTYLKYIGWSLNDKESSVRSAALTALQVLYDEEDNYAPMDTFTARFSERVCQMVDDIDNNVAIKSLGTLTKLVRHDLID 338          
BLAST of mRNA_P-wetherbeei_contig13134.1.1 vs. uniprot
Match: UPI00074FF70D (cohesin subunit SA-2-like n=1 Tax=Gekko japonicus TaxID=146911 RepID=UPI00074FF70D)

HSP 1 Score: 104 bits (259), Expect = 1.150e-22
Identity = 48/114 (42.11%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  118 LEEGIAAIFNGVWVHRYRDPCEPVRVECIRALGEWMLALPDTFVVNGYLKYMGWLLSDKGAAVRLRVLQSLQLIYDQQDMLMRIEEFTGRFRPAVVRMVFDVDGAASEAALRLL 459
            +E  + AIF G+++ RYRD    +R  CI  +G WM   P+TF+ + YLKY+GW+L DK   VRL+ LQ LQ IYDQ++++ +++ FT RF+  ++ M  D D   +  A++LL
Sbjct:  301 IENMMNAIFKGIFLQRYRDIIPEIRAICIEEMGSWMKIYPNTFLNDSYLKYIGWMLYDKQPEVRLKCLQGLQGIYDQKELVSKMDLFTSRFKDRIMSMTLDKDHEVAVQAMKLL 414          
BLAST of mRNA_P-wetherbeei_contig13134.1.1 vs. uniprot
Match: A0A6J2ULP4_CHACN (cohesin subunit SA-1-like n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2ULP4_CHACN)

HSP 1 Score: 103 bits (258), Expect = 1.580e-22
Identity = 54/126 (42.86%), Postives = 78/126 (61.90%), Query Frame = 1
Query:  130 IAAIFNGVWVHRYRDPCEPVRVECIRALGEWMLALPDTFVVNGYLKYMGWLLSDKGAAVRLRVLQSLQLIYDQQDMLMRIEEFTGRFRPAVVRMVFDVDGAASEAALRLLRRAWEGGLLDDLKEEE 507
            I ++F GV+VHRYRD    +R  C+  +G W+   P  F+ +G+LKY+GW+L DK A VRL+ + +LQ +Y ++D + R+E FT RFR  +V MV D D   +  A++LL    E    D L EEE
Sbjct:  296 INSVFKGVFVHRYRDNVPEIRTICMEEIGLWLREYPTYFLSDGHLKYLGWMLHDKQAPVRLQCVLALQRLYQEKDFIGRLELFTSRFRERMVNMVLDKDFDVAVEAIKLLLLVQER-TEDGLSEEE 420          
BLAST of mRNA_P-wetherbeei_contig13134.1.1 vs. uniprot
Match: UPI0011B82D69 (cohesin subunit SA-3 isoform X1 n=3 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B82D69)

HSP 1 Score: 103 bits (258), Expect = 1.580e-22
Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = 1
Query:  130 IAAIFNGVWVHRYRDPCEPVRVECIRALGEWMLALPDTFVVNGYLKYMGWLLSDKGAAVRLRVLQSLQLIYDQQDMLMRIEEFTGRFRPAVVRMVFDVDGAASEAALRLLRRAWEGGLLDDLKEEEREEVRVWH 531
            I A   GV+VHRYRD    +R  CI+ LG W+   P++F+ +GYLKY+GW L DK + VRL+ +++LQ +Y ++D L R+E FT RF+  ++ MVFD +   +  A+ LL       L+    EE  +E    H
Sbjct:  297 INAAMRGVFVHRYRDCVPDIRAVCIQELGLWLRTDPESFLKDGYLKYLGWTLFDKQSVVRLQCVRALQALYQERDFLGRLEFFTNRFKERMLTMVFDKEPDVAAEAVNLLL------LIQQFSEEGLQEEECAH 424          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13134.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4C2E2_PYTIN2.440e-2545.45SCD domain-containing protein (Fragment) n=2 Tax=P... [more]
A0A4W4HJ05_ELEEL1.560e-2443.93Stromal antigen 3 n=1 Tax=Electrophorus electricus... [more]
A0A5N5MG58_PANHP4.570e-2342.98SCD domain-containing protein n=3 Tax=Pangasianodo... [more]
A0A8C6YYH8_NOTPE5.920e-2340.48Cohesin subunit SA-2-like n=1 Tax=Nothoprocta perd... [more]
A0A8C6YTE9_NOTPE6.180e-2340.48Cohesin subunit SA-2-like n=3 Tax=Nothoprocta perd... [more]
A0A7L2SB96_9PASS6.920e-2342.59STAG2 protein (Fragment) n=1 Tax=Mystacornis cross... [more]
A0A7S0RG96_9CHLO1.130e-2242.06Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
UPI00074FF70D1.150e-2242.11cohesin subunit SA-2-like n=1 Tax=Gekko japonicus ... [more]
A0A6J2ULP4_CHACN1.580e-2242.86cohesin subunit SA-1-like n=1 Tax=Chanos chanos Ta... [more]
UPI0011B82D691.580e-2240.30cohesin subunit SA-3 isoform X1 n=3 Tax=Gadus morh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13134contigP-wetherbeei_contig13134:389..1572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog7994.ENSAMXP00000010017
Preferred namestag3
PFAMsSTAG
Model size537
Max annot lvl33208|Metazoa
KEGG koko:K06671,ko:K13055
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.86e-25
EggNOG OGsCOG5537@1|root,KOG2011@2759|Eukaryota,38I10@33154|Opisthokonta,3BIXQ@33208|Metazoa,3D43E@33213|Bilateria,487IN@7711|Chordata,49AA4@7742|Vertebrata,49R4Q@7898|Actinopterygii
DescriptionStromal antigen 3
Cds size537
COG categoryD
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185975.050661-CDS-P-wetherbeei_contig13134:388..5531683185975.050661-CDS-P-wetherbeei_contig13134:388..553Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13134 389..553 -
1683185975.0641882-CDS-P-wetherbeei_contig13134:864..9851683185975.0641882-CDS-P-wetherbeei_contig13134:864..985Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13134 865..985 -
1683185975.0728266-CDS-P-wetherbeei_contig13134:1321..15721683185975.0728266-CDS-P-wetherbeei_contig13134:1321..1572Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13134 1322..1572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13134.1.1prot_P-wetherbeei_contig13134.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13134 389..1572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13134.1.1

>prot_P-wetherbeei_contig13134.1.1 ID=prot_P-wetherbeei_contig13134.1.1|Name=mRNA_P-wetherbeei_contig13134.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
KLATTEQQLKASLSRGSAAAAKSQALALQQRRHAEAASTLEEGIAAIFNG
VWVHRYRDPCEPVRVECIRALGEWMLALPDTFVVNGYLKYMGWLLSDKGA
AVRLRVLQSLQLIYDQQDMLMRIEEFTGRFRPAVVRMVFDVDGAASEAAL
RLLRRAWEGGLLDDLKEEEREEVRVWHG*
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mRNA from alignment at P-wetherbeei_contig13134:389..1572-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13134.1.1 ID=mRNA_P-wetherbeei_contig13134.1.1|Name=mRNA_P-wetherbeei_contig13134.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1184bp|location=Sequence derived from alignment at P-wetherbeei_contig13134:389..1572- (Phaeothamnion wetherbeei SAG_119_79)
AAACTGGCGACGACGGAGCAGCAGCTTAAGGCGTCTCTCTCCCGCGGCAG CGCGGCCGCGGCCAAGTCGCAGGCGCTGGCGCTGCAGCAGCGGCGGCATG CGGAGGCGGCATCGACGCTCGAAGAGGGCATCGCCGCCATCTTTAACGGC GTGTGGGTGCACCGCTACCGCGACCCGTGCGAGCCGGTGCGCGTCGAGTG TATCCGGGCGCTGGGCGAGTGGATGCTGGCGCTGCCCGACACGTTCGTCG TGTGAGTGGAAGCCACGGGCAGGAGGGCCTTTGGTCGCAGACGGGAGACG AGGGGGACGGGGGCGGGGGCGGGCGGGGGGGGCTATTCTTTTTCAGAAAA TTGCTATTTGATTCGTCGATGGCGCTCTGACTTGTGGGTTAAGCATGGTG AAATGTTCGTTTTCTGCTTTCGCATTGGCATGAAAGCTGCGCTTGGTGTC ATCGTGTTGTGGCAGCAGTTGGAGCAGCGGCACTGTAGAGAGTGGTTGAT CTCGTTGGCGCGAGCCCGATACAGCCGTCATTCGCTCCGATCTGACAGCC ATTTGCCACTTCCTTCTATATCAACTCGGCCGTGCAGCAACGGGTACCTG AAGTATATGGGGTGGCTGCTGAGCGACAAGGGCGCCGCCGTCCGCCTGCG GGTGCTGCAGTCCTTGCAACTCATCTACGACCAACAGGACATGCTCATGC GGATCGAGGTGGGTTCAAGATAGTAAAGTGTATTTGACTTGTCTGCGACC GTTTCATCCATAACGGAGACGTTGCATTTCATAGACGGATTCACTCCTCC TCATGTTATCAAGGAACCTAACTGAATTGGCCGAGCGGCGGCGCATGTCT TCACTTTGCGGCGACGGTGACAGCCGCATGGTGGGTTGCTACAAAACTGC AGAGTGCGCACTTTGCGCGGGCAAACCCTCCTGGAAACCAGCTCCCGACC GCTCCCGACCGCTGTTGGCTGCCTTGCCCCCAATTCTTTCCGGCATCTCC CTCGCCGCCGCCGTTGCAGGAGTTCACGGGGCGGTTCCGGCCTGCAGTGG TGCGCATGGTGTTCGACGTGGACGGCGCGGCGTCTGAGGCGGCGCTGCGG CTACTGCGGCGGGCATGGGAGGGCGGTCTGCTCGACGACCTCAAGGAGGA GGAGCGCGAGGAGGTGCGAGTGTGGCATGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13134:389..1572-

>mRNA_P-wetherbeei_contig13134.1.1 ID=mRNA_P-wetherbeei_contig13134.1.1|Name=mRNA_P-wetherbeei_contig13134.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig13134:389..1572- (Phaeothamnion wetherbeei SAG_119_79)
AAACTGGCGACGACGGAGCAGCAGCTTAAGGCGTCTCTCTCCCGCGGCAG
CGCGGCCGCGGCCAAGTCGCAGGCGCTGGCGCTGCAGCAGCGGCGGCATG
CGGAGGCGGCATCGACGCTCGAAGAGGGCATCGCCGCCATCTTTAACGGC
GTGTGGGTGCACCGCTACCGCGACCCGTGCGAGCCGGTGCGCGTCGAGTG
TATCCGGGCGCTGGGCGAGTGGATGCTGGCGCTGCCCGACACGTTCGTCG
TCAACGGGTACCTGAAGTATATGGGGTGGCTGCTGAGCGACAAGGGCGCC
GCCGTCCGCCTGCGGGTGCTGCAGTCCTTGCAACTCATCTACGACCAACA
GGACATGCTCATGCGGATCGAGGAGTTCACGGGGCGGTTCCGGCCTGCAG
TGGTGCGCATGGTGTTCGACGTGGACGGCGCGGCGTCTGAGGCGGCGCTG
CGGCTACTGCGGCGGGCATGGGAGGGCGGTCTGCTCGACGACCTCAAGGA
GGAGGAGCGCGAGGAGGTGCGAGTGTGGCATGGCTGA
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